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Task #2299 (closed)

Opened 14 years ago

Closed 14 years ago

XML: Propose Compliance Specification

Reported by: ajpatterson Owned by: ajpatterson
Priority: major Milestone: OMERO-Beta4.2
Component: Specification Version: n.a.
Keywords: n.a. Cc: curtis, cxallan, jburel, jrswedlow, jamoore
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2010-06-24 (12)

Description (last modified by ajpatterson)

Add content for OME Compliant File Specification

​http://www.ome-xml.org/wiki/ComplianceSpecification

Expanded to include:
​http://www.ome-xml.org/wiki/CompliantHCSSpecification

Note: Name is OME Compliant, the wiki page will be renamed to match this in due course.

Change History (11)

comment:1 Changed 14 years ago by jmoore

  • Sprint changed from 2010-04-30 (8) to 2010-05-13 (9)

comment:2 Changed 14 years ago by jrswedlow

Note that paper describing this is published May 31, so we need this ut before then.

comment:3 Changed 14 years ago by ajpatterson

As a basis for the decision of what to include I have created a list of how many file formats we read contains the value. I then selected all values that are read by more than 10 formats:

Image.CreationDate	32
Image.DefaultPixels	69
Image.Description	21
Image.InstrumentRef	26
Image.Name	25

ChannelComponent.Index	74
ChannelComponent.Pixels	74

LogicalChannel.EmWave	12
LogicalChannel.ExWave	12
LogicalChannel.Name	17
LogicalChannel.SamplesPerPixel	72

Pixels	74

Plane.TheC	74
Plane.TheT	74
Plane.TheZ	74
PlaneTiming	15

Dimensions.PhysicalSizeX	44
Dimensions.PhysicalSizeY	44
Dimensions.PhysicalSizeZ	24
Dimensions.TimeIncrement	13

Instrument.ID	26

Detector.ID	20
Detector.Type	19
DetectorSettings.Detector	21
DetectorSettings.Gain	14

Objective.Correction	17
Objective.ID	17
Objective.Immersion	17
Objective.LensNA	15
Objective.Model	11
Objective.NominalMagnification	12
ObjectiveSettings.Objective	17

comment:4 Changed 14 years ago by ajpatterson

  • Description modified (diff)
  • Status changed from new to assigned

comment:5 Changed 14 years ago by ajpatterson

  • Remaining Time changed from 1 to 0.5

comment:6 Changed 14 years ago by ajpatterson

Work already done for paper so created sample, added the figure to the page and renamed it to:

​http://www.ome-xml.org/wiki/CompliantSpecification

comment:7 Changed 14 years ago by cxallan

  • Sprint changed from 2010-05-13 (9) to 2010-05-27 (10)

comment:8 Changed 14 years ago by cxallan

  • Sprint changed from 2010-05-27 (10) to 2010-06-10 (11)

comment:9 Changed 14 years ago by jburel

  • Sprint changed from 2010-06-10 (11) to 2010-06-24 (12)

comment:11 Changed 14 years ago by ajpatterson

  • Remaining Time changed from 0.5 to 0
  • Resolution set to fixed
  • Status changed from assigned to closed
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