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Task #2939 (new)

Opened 14 years ago

Last modified 14 years ago

BUG: import Lif — at Initial Version

Reported by: jburel Owned by: mlinkert
Priority: blocker Milestone: OMERO-Beta4.2.1
Component: Import Version: n.a.
Keywords: n.a. Cc: cxallan
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

Trying to import a Lif.
Was importing before (wrongly too many channels 10: 2 valid and 8 not valid), now I have the following exception

javax.xml.parsers.FactoryConfigurationError: Provider org.apache.xerces.jaxp.SAXParserFactoryImpl not found
	at javax.xml.parsers.SAXParserFactory.newInstance(SAXParserFactory.java:113)
	at loci.common.xml.XMLTools.parseXML(XMLTools.java:291)
	at loci.common.xml.XMLTools.parseXML(XMLTools.java:279)
	at loci.common.xml.XMLTools.parseXML(XMLTools.java:258)
	at loci.formats.in.LIFReader.initMetadata(LIFReader.java:347)
	at loci.formats.in.LIFReader.initFile(LIFReader.java:327)
	at loci.formats.FormatReader.setId(FormatReader.java:1074)
	at loci.formats.ImageReader.setId(ImageReader.java:650)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:244)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480)
	at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:255)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:447)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:384)

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