BUG: Comment

[dzmacdonald]

Added stupid big comment to webclient

Wed, 20 Oct 2010 17:07:12 views-feedback ERROR    handler500: Server error
Wed, 20 Oct 2010 17:07:12 views-feedback ERROR    Traceback (most recent call last):

  File "/Users/donald/OMERO3/dist/lib/python/django/core/handlers/base.py", line 92, in get_response
    response = callback(request, *callback_args, **callback_kwargs)

  File "/Users/donald/OMERO3/dist/lib/python/omeroweb/webclient/views.py", line 185, in wrapped
    return f(request, *args, **kwargs)

  File "/Users/donald/OMERO3/dist/lib/python/omeroweb/webclient/views.py", line 1391, in manage_action_containers
    manager.createCommentAnnotation(o_type, content)

  File "/Users/donald/OMERO3/dist/lib/python/omeroweb/webclient/controller/container.py", line 496, in createCommentAnnotation
    self.conn.saveObject(l_ann)

  File "/Users/donald/OMERO3/dist/lib/python/omeroweb/webclient/webclient_gateway.py", line 1234, in saveObject
    u.saveObject(obj)

  File "/Users/donald/OMERO3/dist/lib/python/omero/gateway/__init__.py", line 2311, in wrapped
    return inner(*args, **kwargs)

  File "/Users/donald/OMERO3/dist/lib/python/omero/gateway/__init__.py", line 2244, in inner
    return f(*args, **kwargs)

  File "/Users/donald/OMERO3/dist/lib/python/omero_api_IUpdate_ice.py", line 85, in saveObject
    return _M_omero.api.IUpdate._op_saveObject.invoke(self, ((obj, ), _ctx))

InternalException: exception ::omero::InternalException
{
    serverStackTrace = ome.conditions.InternalException:  Wrapped Exception: (java.lang.OutOfMemoryError):
Java heap space
	at java.lang.StringCoding$CharsetSE.encode(StringCoding.java:334)
	at java.lang.StringCoding.encode(StringCoding.java:378)
	at java.lang.String.getBytes(String.java:812)
	at org.postgresql.core.Utils.encodeUTF8(Utils.java:54)
	at org.postgresql.core.v3.SimpleParameterList.getV3Length(SimpleParameterList.java:234)
	at org.postgresql.core.v3.QueryExecutorImpl.sendBind(QueryExecutorImpl.java:824)
	at org.postgresql.core.v3.QueryExecutorImpl.sendOneQuery(QueryExecutorImpl.java:1069)
	at org.postgresql.core.v3.QueryExecutorImpl.sendQuery(QueryExecutorImpl.java:647)
	at org.postgresql.core.v3.QueryExecutorImpl.execute(QueryExecutorImpl.java:192)
	at org.postgresql.jdbc2.AbstractJdbc2Statement.execute(AbstractJdbc2Statement.java:451)
	at org.postgresql.jdbc2.AbstractJdbc2Statement.executeWithFlags(AbstractJdbc2Statement.java:350)
	at org.postgresql.jdbc2.AbstractJdbc2Statement.executeUpdate(AbstractJdbc2Statement.java:304)
	at org.hibernate.jdbc.NonBatchingBatcher.addToBatch(NonBatchingBatcher.java:46)
	at org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEntityPersister.java:2418)
	at org.hibernate.persister.entity.AbstractEntityPersister.insert(AbstractEntityPersister.java:2858)
	at org.hibernate.action.EntityInsertAction.execute(EntityInsertAction.java:79)
	at org.hibernate.engine.ActionQueue.execute(ActionQueue.java:268)
	at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:260)
	at org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:179)
	at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:321)
	at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:51)
	at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1206)
	at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:294)
	at ome.logic.UpdateImpl.doAction(UpdateImpl.java:312)
	at ome.logic.UpdateImpl.doAction(UpdateImpl.java:302)
	at ome.logic.UpdateImpl.saveObject(UpdateImpl.java:108)
	at sun.reflect.GeneratedMethodAccessor1151.invoke(Unknown Source)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:585)
	at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
	at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)

    serverExceptionClass = ome.conditions.InternalException
    message =  Wrapped Exception: (java.lang.OutOfMemoryError):
Java heap space
}

Grumpy:log donald$ 

[atarkowska]

is this not server problem?

[jmoore]

Donald, could I get the text you're using as an attachment please. This may be a JVM bug. (Lots of people on the web have been posting OOMs from StringCoding.trim())

[jmoore]

Passing to Donald for the actual string.

[jburel]

Moved from sprint 2010-10-28 (18)

[dzmacdonald]

crash file

[jburel]

Moved from sprint 2010-11-11 (19)

[jburel]

This will be part of known issues/limitation i.e. if large comment better to use file attachment

[jburel]

Moving to known issues