Task #5557 (new)
Opened 13 years ago
Last modified 13 years ago
BUG: stk import failed — at Version 2
| Reported by: | atarkowska | Owned by: | jburel |
|---|---|---|---|
| Priority: | blocker | Milestone: | OMERO-Beta4.3 |
| Component: | Import | Version: | n.a. |
| Keywords: | n.a. | Cc: | cxallan, jamoore, jburel |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | 2011-06-02 (13) |
Description (last modified by atarkowska)
Problem appeared when I was changing the dataset from the menu above the list
java.lang.RuntimeException: omero.ValidationException
serverStackTrace = "ome.conditions.ValidationException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]; nested exception is org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]
at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:663)
at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)
at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy64.doWork(Unknown Source)
at ome.services.util.Executor$Impl.execute(Executor.java:369)
at ome.services.throttling.Adapter.run(Adapter.java:51)
at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150)
at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:188)
at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85)
at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:218)
at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:366)
at IceInternal.Incoming.invoke(Incoming.java:159)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
at Ice.ConnectionI.message(ConnectionI.java:972)
at IceInternal.ThreadPool.run(ThreadPool.java:577)
at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
"
serverExceptionClass = "ome.conditions.ValidationException"
message = "No row with the given identifier exists: [ome.model.containers.Dataset#1155]; nested exception is org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]"
at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2142)
at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:293)
at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:442)
at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6142)
at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1103)
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
at java.lang.Thread.run(Thread.java:680)
Caused by: omero.ValidationException
serverStackTrace = "ome.conditions.ValidationException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]; nested exception is org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]
at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:663)
at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)
at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy64.doWork(Unknown Source)
at ome.services.util.Executor$Impl.execute(Executor.java:369)
at ome.services.throttling.Adapter.run(Adapter.java:51)
at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150)
at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:188)
at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85)
at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:218)
at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:366)
at IceInternal.Incoming.invoke(Incoming.java:159)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
at Ice.ConnectionI.message(ConnectionI.java:972)
at IceInternal.ThreadPool.run(ThreadPool.java:577)
at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
"
serverExceptionClass = "ome.conditions.ValidationException"
message = "No row with the given identifier exists: [ome.model.containers.Dataset#1155]; nested exception is org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]"
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at java.lang.Class.newInstance0(Class.java:355)
at java.lang.Class.newInstance(Class.java:308)
at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
at IceInternal.BasicStream.throwException(BasicStream.java:1632)
at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
at omero.api._MetadataStoreDelM.saveToDB(_MetadataStoreDelM.java:162)
at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:254)
at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:226)
at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2127)
... 14 more
at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6184)
at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1103)
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.RuntimeException: omero.ValidationException
serverStackTrace = "ome.conditions.ValidationException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]; nested exception is org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]
at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:663)
at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)
at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy64.doWork(Unknown Source)
at ome.services.util.Executor$Impl.execute(Executor.java:369)
at ome.services.throttling.Adapter.run(Adapter.java:51)
at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150)
at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:188)
at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85)
at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:218)
at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:366)
at IceInternal.Incoming.invoke(Incoming.java:159)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
at Ice.ConnectionI.message(ConnectionI.java:972)
at IceInternal.ThreadPool.run(ThreadPool.java:577)
at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
"
serverExceptionClass = "ome.conditions.ValidationException"
message = "No row with the given identifier exists: [ome.model.containers.Dataset#1155]; nested exception is org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]"
at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2142)
at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:293)
at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:442)
at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6142)
... 11 more
Caused by: omero.ValidationException
serverStackTrace = "ome.conditions.ValidationException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]; nested exception is org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]
at org.springframework.orm.hibernate3.SessionFactoryUtils.convertHibernateAccessException(SessionFactoryUtils.java:663)
at org.springframework.orm.hibernate3.HibernateAccessor.convertHibernateAccessException(HibernateAccessor.java:412)
at org.springframework.orm.hibernate3.HibernateInterceptor.invoke(HibernateInterceptor.java:117)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111)
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
at $Proxy64.doWork(Unknown Source)
at ome.services.util.Executor$Impl.execute(Executor.java:369)
at ome.services.throttling.Adapter.run(Adapter.java:51)
at ome.services.throttling.InThreadThrottlingStrategy.runnableCall(InThreadThrottlingStrategy.java:89)
at ome.services.blitz.impl.AbstractAmdServant.runnableCall(AbstractAmdServant.java:150)
at ome.services.blitz.impl.MetadataStoreI.saveToDB_async(MetadataStoreI.java:188)
at omero.api._MetadataStoreTie.saveToDB_async(_MetadataStoreTie.java:85)
at omero.api._MetadataStoreDisp.___saveToDB(_MetadataStoreDisp.java:218)
at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:366)
at IceInternal.Incoming.invoke(Incoming.java:159)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
at Ice.ConnectionI.message(ConnectionI.java:972)
at IceInternal.ThreadPool.run(ThreadPool.java:577)
at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
"
serverExceptionClass = "ome.conditions.ValidationException"
message = "No row with the given identifier exists: [ome.model.containers.Dataset#1155]; nested exception is org.hibernate.ObjectNotFoundException: No row with the given identifier exists: [ome.model.containers.Dataset#1155]"
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at java.lang.Class.newInstance0(Class.java:355)
at java.lang.Class.newInstance(Class.java:308)
at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
at IceInternal.BasicStream.throwException(BasicStream.java:1632)
at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
at omero.api._MetadataStoreDelM.saveToDB(_MetadataStoreDelM.java:162)
at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:254)
at omero.api.MetadataStorePrxHelper.saveToDB(MetadataStorePrxHelper.java:226)
at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2127)
... 14 more
Change History (2)
comment:1 Changed 13 years ago by atarkowska
- Summary changed from stk to BUG: stk import failed
comment:2 Changed 13 years ago by atarkowska
- Description modified (diff)
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