| 3 | | |
| 4 | | Importer error |
| 5 | | |
| 6 | | {{{ |
| 7 | | 2011-05-30 09:37:52,695 838209 [2-thread-1] DEBUG ome.formats.importer.ImportLibrary - Plane:3 X:512 Y:1024 TileWidth:256 TileHeight:16 arrayBuf.length:4096 |
| 8 | | 2011-05-30 09:37:52,755 838269 [2-thread-1] DEBUG ome.formats.importer.ImportLibrary - Plane:3 X:768 Y:1024 TileWidth:256 TileHeight:16 arrayBuf.length:4096 |
| 9 | | 2011-05-30 09:37:52,830 838344 [2-thread-1] DEBUG ome.formats.importer.ImportLibrary - Plane:3 X:1024 Y:1024 TileWidth:256 TileHeight:16 arrayBuf.length:4096 |
| 10 | | 2011-05-30 09:37:52,890 838404 [2-thread-1] DEBUG ome.formats.importer.ImportLibrary - Plane:3 X:1280 Y:1024 TileWidth:112 TileHeight:16 arrayBuf.length:1792 |
| 11 | | 2011-05-30 09:37:52,982 838496 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - IMPORT_STEP Image: 4 Series: 3 Total Series: 16 |
| 12 | | 2011-05-30 09:37:52,984 838498 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - DATA_STORED |
| 13 | | 2011-05-30 09:37:52,987 838501 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - DATASET_STORED |
| 14 | | 2011-05-30 09:37:54,043 839557 [2-thread-1] INFO ormats.importer.gui.LoggingImportMonitor - INTERNAL_EXCEPTION: /Users/will/Documents/biology-data/Test-Import-Images/Leica LIF/chris/free edge 6.lif |
| 15 | | omero.ResourceError |
| 16 | | serverStackTrace = "ome.conditions.ResourceError: FormatException: c:\OMERO\Pixels\795_pyramid |
| 17 | | Invalid TIFF file |
| 18 | | at ome.io.bioformats.BfPixelBuffer.reader(BfPixelBuffer.java:72) |
| 19 | | at ome.io.bioformats.BfPixelBuffer.getTileSize(BfPixelBuffer.java:483) |
| 20 | | at ome.io.bioformats.BfPyramidPixelBuffer.getTileSize(BfPyramidPixelBuffer.java:1156) |
| 21 | | at ome.services.RawPixelsBean.getTileSize(RawPixelsBean.java:698) |
| 22 | | at sun.reflect.GeneratedMethodAccessor1253.invoke(Unknown Source) |
| 23 | | at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) |
| 24 | | at java.lang.reflect.Method.invoke(Unknown Source) |
| 25 | | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
| 26 | | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
| 27 | | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
| 28 | | at ome.security.basic.EventHandler.invoke(EventHandler.java:150) |
| 29 | | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
| 30 | | at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182) |
| 31 | | at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166) |
| 32 | | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
| 33 | | at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108) |
| 34 | | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
| 35 | | at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231) |
| 36 | | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
| 37 | | at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:111) |
| 38 | | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
| 39 | | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
| 40 | | at $Proxy85.getTileSize(Unknown Source) |
| 41 | | at sun.reflect.GeneratedMethodAccessor1253.invoke(Unknown Source) |
| 42 | | at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) |
| 43 | | at java.lang.reflect.Method.invoke(Unknown Source) |
| 44 | | at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307) |
| 45 | | at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) |
| 46 | | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) |
| 47 | | at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83) |
| 48 | | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
| 49 | | at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43) |
| 50 | | at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) |
| 51 | | at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) |
| 52 | | at $Proxy85.getTileSize(Unknown Source) |
| 53 | | at sun.reflect.GeneratedMethodAccessor1297.invoke(Unknown Source) |
| 54 | | at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source) |
| 55 | | at java.lang.reflect.Method.invoke(Unknown Source) |
| 56 | | at ome.services.blitz.util.IceMethodInvoker.invoke(IceMethodInvoker.java:179) |
| 57 | | at ome.services.throttling.Callback.run(Callback.java:56) |
| 58 | | at ome.services.throttling.InThreadThrottlingStrategy.callInvokerOnRawArgs(InThreadThrottlingStrategy.java:56) |
| 59 | | at ome.services.blitz.impl.AbstractAmdServant.callInvokerOnRawArgs(AbstractAmdServant.java:136) |
| 60 | | at ome.services.blitz.impl.AbstractPyramidServant.getTileSize_async(AbstractPyramidServant.java:53) |
| 61 | | at omero.api._RawPixelsStoreTie.getTileSize_async(_RawPixelsStoreTie.java:78) |
| 62 | | at omero.api._PyramidServiceDisp.___getTileSize(_PyramidServiceDisp.java:216) |
| 63 | | at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1237) |
| 64 | | at IceInternal.Incoming.invoke(Incoming.java:159) |
| 65 | | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
| 66 | | at Ice.ConnectionI.message(ConnectionI.java:972) |
| 67 | | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
| 68 | | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
| 69 | | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
| 70 | | " |
| 71 | | serverExceptionClass = "ome.conditions.ResourceError" |
| 72 | | message = "FormatException: c:\OMERO\Pixels\795_pyramid |
| 73 | | Invalid TIFF file" |
| 74 | | at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) |
| 75 | | at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) |
| 76 | | at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) |
| 77 | | at java.lang.reflect.Constructor.newInstance(Constructor.java:513) |
| 78 | | at java.lang.Class.newInstance0(Class.java:355) |
| 79 | | at java.lang.Class.newInstance(Class.java:308) |
| 80 | | at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243) |
| 81 | | at IceInternal.BasicStream.throwException(BasicStream.java:1632) |
| 82 | | at IceInternal.Outgoing.throwUserException(Outgoing.java:442) |
| 83 | | at omero.api._RawPixelsStoreDelM.getTileSize(_RawPixelsStoreDelM.java:119) |
| 84 | | at omero.api.RawPixelsStorePrxHelper.getTileSize(RawPixelsStorePrxHelper.java:184) |
| 85 | | at omero.api.RawPixelsStorePrxHelper.getTileSize(RawPixelsStorePrxHelper.java:156) |
| 86 | | at ome.formats.OMEROMetadataStoreClient.getTileSize(OMEROMetadataStoreClient.java:2465) |
| 87 | | at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:700) |
| 88 | | at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:488) |
| 89 | | at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216) |
| 90 | | at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59) |
| 91 | | at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134) |
| 92 | | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) |
| 93 | | at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) |
| 94 | | at java.util.concurrent.FutureTask.run(FutureTask.java:138) |
| 95 | | at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98) |
| 96 | | at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:207) |
| 97 | | at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) |
| 98 | | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) |
| 99 | | at java.lang.Thread.run(Thread.java:637) |
| 100 | | |
| 101 | | 2011-05-30 09:37:54,051 839565 [2-thread-1] ERROR ome.formats.importer.gui.GuiImporter - EXCEPTION_EVENT |
| 102 | | }}} |
