Task #6621 (new)
Opened 13 years ago
Last modified 13 years ago
BUG: Trestle Images nto displaying fully — at Initial Version
| Reported by: | sylittlewood | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-Beta4.3.2 |
| Component: | General | Version: | n.a. |
| Keywords: | n.a. | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
IN testing Trestle Image import the images are reported as being imported successfully but after processing has occurred on the server the images do not render properly.
This has been verified by running the import test for these images twice.
The images failing are as below with the following error in insight logs.
/Volumes/ome/data_repo/test_images_good/trestle/openslide
CMU-2.tif [Series 1]
CMU-3.tif [Series 1]
Series 2-8 of these images work okay.
Judging by the composition of CMU-1 images after import I believe that these are the highest resolution images of the series.
java.lang.Exception: org.openmicroscopy.shoola.env.rnd.RenderingServiceException?: RenderImage?
at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl?.renderImage(OmeroImageServiceImpl?.java:466)
at org.openmicroscopy.shoola.env.data.views.calls.ImageRenderer?$1.doCall(ImageRenderer?.java:83)
at org.openmicroscopy.shoola.env.data.views.BatchCall?.doStep(BatchCall?.java:144)
at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask?.doStep(CompositeTask?.java:226)
at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall?.doStep(CompositeBatchCall?.java:126)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand?.exec(ExecCommand?.java:165)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand?.run(ExecCommand?.java:274)
at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor?$Runner.run(AsyncProcessor?.java:91)
at java.lang.Thread.run(Thread.java:680)
Caused by: org.openmicroscopy.shoola.env.rnd.RenderingServiceException?: An error occurred while trying to set the cannot render the plane.
omero.InternalException?
serverStackTrace = "ome.conditions.InternalException?: Wrapped Exception: (java.lang.NegativeArraySizeException?):
null
at omeis.providers.re.RGBIntBuffer.<init>(RGBIntBuffer.java:69)
at omeis.providers.re.RenderingStrategy?.getIntBuffer(RenderingStrategy?.java:188)
at omeis.providers.re.HSBStrategy.renderAsPackedInt(HSBStrategy.java:274)
at omeis.providers.re.Renderer.renderAsPackedInt(Renderer.java:511)
at ome.services.RenderingBean?.renderAsPackedInt(RenderingBean?.java:478)
at sun.reflect.GeneratedMethodAccessor1039.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl?.invoke(DelegatingMethodAccessorImpl?.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.springframework.aop.support.AopUtils?.invokeJoinpointUsingReflection(AopUtils?.java:307)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.invokeJoinpoint(ReflectiveMethodInvocation?.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.proceed(ReflectiveMethodInvocation?.java:150)
at ome.services.util.ServiceHandler?.invoke(ServiceHandler?.java:116)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.proceed(ReflectiveMethodInvocation?.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy?.invoke(JdkDynamicAopProxy?.java:202)
at $Proxy86.renderAsPackedInt(Unknown Source)
at sun.reflect.GeneratedMethodAccessor1039.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl?.invoke(DelegatingMethodAccessorImpl?.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.springframework.aop.support.AopUtils?.invokeJoinpointUsingReflection(AopUtils?.java:307)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.invokeJoinpoint(ReflectiveMethodInvocation?.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.proceed(ReflectiveMethodInvocation?.java:150)
at ome.security.basic.BasicSecurityWiring?.invoke(BasicSecurityWiring?.java:83)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.proceed(ReflectiveMethodInvocation?.java:172)
at ome.services.blitz.fire.AopContextInitializer?.invoke(AopContextInitializer?.java:43)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.proceed(ReflectiveMethodInvocation?.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy?.invoke(JdkDynamicAopProxy?.java:202)
at $Proxy86.renderAsPackedInt(Unknown Source)
at sun.reflect.GeneratedMethodAccessor1040.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl?.invoke(DelegatingMethodAccessorImpl?.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at ome.services.blitz.util.IceMethodInvoker?.invoke(IceMethodInvoker?.java:179)
at ome.services.throttling.Callback.run(Callback.java:56)
at ome.services.throttling.InThreadThrottlingStrategy?.callInvokerOnRawArgs(InThreadThrottlingStrategy?.java:56)
at ome.services.blitz.impl.AbstractAmdServant?.callInvokerOnRawArgs(AbstractAmdServant?.java:136)
at ome.services.blitz.impl.RenderingEngineI.renderAsPackedInt_async(RenderingEngineI.java:332)
at omero.api._RenderingEngineTie.renderAsPackedInt_async(_RenderingEngineTie.java:288)
at omero.api._RenderingEngineDisp._renderAsPackedInt(_RenderingEngineDisp.java:502)
at omero.api._RenderingEngineDisp.dispatch(_RenderingEngineDisp.java:1680)
at IceInternal?.Incoming.invoke(Incoming.java:159)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
at Ice.ConnectionI.message(ConnectionI.java:972)
at IceInternal?.ThreadPool?.run(ThreadPool?.java:577)
at IceInternal?.ThreadPool?.access$100(ThreadPool?.java:12)
at IceInternal?.ThreadPool?$EventHandlerThread?.run(ThreadPool?.java:971)
"
serverExceptionClass = "ome.conditions.InternalException?"
message = " Wrapped Exception: (java.lang.NegativeArraySizeException?):
null"
at sun.reflect.NativeConstructorAccessorImpl?.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl?.newInstance(NativeConstructorAccessorImpl?.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl?.newInstance(DelegatingConstructorAccessorImpl?.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at java.lang.Class.newInstance0(Class.java:355)
at java.lang.Class.newInstance(Class.java:308)
at IceInternal?.BasicStream?$DynamicUserExceptionFactory?.createAndThrow(BasicStream?.java:2243)
at IceInternal?.BasicStream?.throwException(BasicStream?.java:1632)
at IceInternal?.Outgoing.throwUserException(Outgoing.java:442)
at omero.api._RenderingEngineDelM.renderAsPackedInt(_RenderingEngineDelM.java:1582)
at omero.api.RenderingEnginePrxHelper?.renderAsPackedInt(RenderingEnginePrxHelper?.java:2230)
at omero.api.RenderingEnginePrxHelper?.renderAsPackedInt(RenderingEnginePrxHelper?.java:2202)
at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy?.renderUncompressed(RenderingControlProxy?.java:545)
at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy?.render(RenderingControlProxy?.java:1547)
at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy?.render(RenderingControlProxy?.java:1531)
at org.openmicroscopy.shoola.env.rnd.PixelsServicesFactory?.render(PixelsServicesFactory?.java:483)
at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl?.renderImage(OmeroImageServiceImpl?.java:445)
at org.openmicroscopy.shoola.env.data.views.calls.ImageRenderer?$1.doCall(ImageRenderer?.java:83)
at org.openmicroscopy.shoola.env.data.views.BatchCall?.doStep(BatchCall?.java:144)
at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask?.doStep(CompositeTask?.java:226)
at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall?.doStep(CompositeBatchCall?.java:126)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand?.exec(ExecCommand?.java:165)
at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand?.run(ExecCommand?.java:274)
at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor?$Runner.run(AsyncProcessor?.java:91)
at java.lang.Thread.run(Thread.java:680)
at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy?.handleException(RenderingControlProxy?.java:222)
at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy?.renderUncompressed(RenderingControlProxy?.java:552)
at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy?.render(RenderingControlProxy?.java:1547)
at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy?.render(RenderingControlProxy?.java:1531)
at org.openmicroscopy.shoola.env.rnd.PixelsServicesFactory?.render(PixelsServicesFactory?.java:483)
at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl?.renderImage(OmeroImageServiceImpl?.java:445)
... 8 more
Caused by: omero.InternalException?
serverStackTrace = "ome.conditions.InternalException?: Wrapped Exception: (java.lang.NegativeArraySizeException?):
null
at omeis.providers.re.RGBIntBuffer.<init>(RGBIntBuffer.java:69)
at omeis.providers.re.RenderingStrategy?.getIntBuffer(RenderingStrategy?.java:188)
at omeis.providers.re.HSBStrategy.renderAsPackedInt(HSBStrategy.java:274)
at omeis.providers.re.Renderer.renderAsPackedInt(Renderer.java:511)
at ome.services.RenderingBean?.renderAsPackedInt(RenderingBean?.java:478)
at sun.reflect.GeneratedMethodAccessor1039.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl?.invoke(DelegatingMethodAccessorImpl?.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.springframework.aop.support.AopUtils?.invokeJoinpointUsingReflection(AopUtils?.java:307)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.invokeJoinpoint(ReflectiveMethodInvocation?.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.proceed(ReflectiveMethodInvocation?.java:150)
at ome.services.util.ServiceHandler?.invoke(ServiceHandler?.java:116)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.proceed(ReflectiveMethodInvocation?.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy?.invoke(JdkDynamicAopProxy?.java:202)
at $Proxy86.renderAsPackedInt(Unknown Source)
at sun.reflect.GeneratedMethodAccessor1039.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl?.invoke(DelegatingMethodAccessorImpl?.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.springframework.aop.support.AopUtils?.invokeJoinpointUsingReflection(AopUtils?.java:307)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.invokeJoinpoint(ReflectiveMethodInvocation?.java:183)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.proceed(ReflectiveMethodInvocation?.java:150)
at ome.security.basic.BasicSecurityWiring?.invoke(BasicSecurityWiring?.java:83)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.proceed(ReflectiveMethodInvocation?.java:172)
at ome.services.blitz.fire.AopContextInitializer?.invoke(AopContextInitializer?.java:43)
at org.springframework.aop.framework.ReflectiveMethodInvocation?.proceed(ReflectiveMethodInvocation?.java:172)
at org.springframework.aop.framework.JdkDynamicAopProxy?.invoke(JdkDynamicAopProxy?.java:202)
at $Proxy86.renderAsPackedInt(Unknown Source)
at sun.reflect.GeneratedMethodAccessor1040.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl?.invoke(DelegatingMethodAccessorImpl?.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at ome.services.blitz.util.IceMethodInvoker?.invoke(IceMethodInvoker?.java:179)
at ome.services.throttling.Callback.run(Callback.java:56)
at ome.services.throttling.InThreadThrottlingStrategy?.callInvokerOnRawArgs(InThreadThrottlingStrategy?.java:56)
at ome.services.blitz.impl.AbstractAmdServant?.callInvokerOnRawArgs(AbstractAmdServant?.java:136)
at ome.services.blitz.impl.RenderingEngineI.renderAsPackedInt_async(RenderingEngineI.java:332)
at omero.api._RenderingEngineTie.renderAsPackedInt_async(_RenderingEngineTie.java:288)
at omero.api._RenderingEngineDisp._renderAsPackedInt(_RenderingEngineDisp.java:502)
at omero.api._RenderingEngineDisp.dispatch(_RenderingEngineDisp.java:1680)
at IceInternal?.Incoming.invoke(Incoming.java:159)
at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
at Ice.ConnectionI.message(ConnectionI.java:972)
at IceInternal?.ThreadPool?.run(ThreadPool?.java:577)
at IceInternal?.ThreadPool?.access$100(ThreadPool?.java:12)
at IceInternal?.ThreadPool?$EventHandlerThread?.run(ThreadPool?.java:971)
"
serverExceptionClass = "ome.conditions.InternalException?"
message = " Wrapped Exception: (java.lang.NegativeArraySizeException?):
null"
at sun.reflect.NativeConstructorAccessorImpl?.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl?.newInstance(NativeConstructorAccessorImpl?.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl?.newInstance(DelegatingConstructorAccessorImpl?.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at java.lang.Class.newInstance0(Class.java:355)
at java.lang.Class.newInstance(Class.java:308)
at IceInternal?.BasicStream?$DynamicUserExceptionFactory?.createAndThrow(BasicStream?.java:2243)
at IceInternal?.BasicStream?.throwException(BasicStream?.java:1632)
at IceInternal?.Outgoing.throwUserException(Outgoing.java:442)
at omero.api._RenderingEngineDelM.renderAsPackedInt(_RenderingEngineDelM.java:1582)
at omero.api.RenderingEnginePrxHelper?.renderAsPackedInt(RenderingEnginePrxHelper?.java:2230)
at omero.api.RenderingEnginePrxHelper?.renderAsPackedInt(RenderingEnginePrxHelper?.java:2202)
at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy?.renderUncompressed(RenderingControlProxy?.java:545)
... 12 more
at org.openmicroscopy.shoola.env.ui.UserNotifierImpl?.showErrorDialog(UserNotifierImpl?.java:183)
at org.openmicroscopy.shoola.env.ui.UserNotifierImpl?.notifyError(UserNotifierImpl?.java:272)
at org.openmicroscopy.shoola.env.ui.UserNotifierImpl?.notifyError(UserNotifierImpl?.java:242)
at org.openmicroscopy.shoola.agents.imviewer.DataLoader?.handleException(DataLoader?.java:158)
at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:84)
at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor?$1.run(BatchCallMonitor?.java:124)
at java.awt.event.InvocationEvent?.dispatch(InvocationEvent?.java:209)
at java.awt.EventQueue?.dispatchEventImpl(EventQueue?.java:677)
at java.awt.EventQueue?.access$000(EventQueue?.java:85)
at java.awt.EventQueue?$1.run(EventQueue?.java:638)
at java.awt.EventQueue?$1.run(EventQueue?.java:636)
at java.security.AccessController?.doPrivileged(Native Method)
at java.security.AccessControlContext?$1.doIntersectionPrivilege(AccessControlContext?.java:87)
at java.awt.EventQueue?.dispatchEvent(EventQueue?.java:647)
at java.awt.EventDispatchThread?.pumpOneEventForFilters(EventDispatchThread?.java:296)
at java.awt.EventDispatchThread?.pumpEventsForFilter(EventDispatchThread?.java:211)
at java.awt.EventDispatchThread?.pumpEventsForFilter(EventDispatchThread?.java:205)
at java.awt.Dialog$1.run(Dialog.java:1046)
at java.awt.Dialog$3.run(Dialog.java:1098)
at java.security.AccessController?.doPrivileged(Native Method)
at java.awt.Dialog.show(Dialog.java:1096)
at java.awt.Component.show(Component.java:1584)
at java.awt.Component.setVisible(Component.java:1536)
at java.awt.Window.setVisible(Window.java:842)
at java.awt.Dialog.setVisible(Dialog.java:986)
at org.openmicroscopy.shoola.util.ui.UIUtilities.centerAndShow(UIUtilities.java:561)
at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerControl?.stateChanged(ImViewerControl?.java:895)
at org.openmicroscopy.shoola.util.ui.component.AbstractComponent?.fireStateChange(AbstractComponent?.java:103)
at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerComponent?.renderXYPlane(ImViewerComponent?.java:1081)
at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerComponent?.onRndLoaded(ImViewerComponent?.java:2837)
at org.openmicroscopy.shoola.agents.imviewer.view.ImViewerControl?.propertyChange(ImViewerControl?.java:968)
at org.openmicroscopy.shoola.util.ui.component.AbstractComponent?.firePropertyChange(AbstractComponent?.java:147)
at org.openmicroscopy.shoola.agents.metadata.view.MetadataViewerComponent?.onRndLoaded(MetadataViewerComponent?.java:846)
at org.openmicroscopy.shoola.agents.metadata.editor.EditorModel?.onRndLoaded(EditorModel?.java:2243)
at org.openmicroscopy.shoola.agents.metadata.editor.EditorComponent?.setRenderingControl(EditorComponent?.java:602)
at org.openmicroscopy.shoola.agents.metadata.RenderingControlLoader?.handleResult(RenderingControlLoader?.java:163)
at org.openmicroscopy.shoola.env.data.events.DSCallAdapter.eventFired(DSCallAdapter.java:90)
at org.openmicroscopy.shoola.env.data.views.BatchCallMonitor?$1.run(BatchCallMonitor?.java:124)
at java.awt.event.InvocationEvent?.dispatch(InvocationEvent?.java:209)
at java.awt.EventQueue?.dispatchEventImpl(EventQueue?.java:677)
at java.awt.EventQueue?.access$000(EventQueue?.java:85)
at java.awt.EventQueue?$1.run(EventQueue?.java:638)
at java.awt.EventQueue?$1.run(EventQueue?.java:636)
at java.security.AccessController?.doPrivileged(Native Method)
at java.security.AccessControlContext?$1.doIntersectionPrivilege(AccessControlContext?.java:87)
at java.awt.EventQueue?.dispatchEvent(EventQueue?.java:647)
at java.awt.EventDispatchThread?.pumpOneEventForFilters(EventDispatchThread?.java:296)
at java.awt.EventDispatchThread?.pumpEventsForFilter(EventDispatchThread?.java:211)
at java.awt.EventDispatchThread?.pumpEventsForHierarchy(EventDispatchThread?.java:201)
at java.awt.EventDispatchThread?.pumpEvents(EventDispatchThread?.java:196)
at java.awt.EventDispatchThread?.pumpEvents(EventDispatchThread?.java:188)
at java.awt.EventDispatchThread?.run(EventDispatchThread?.java:122)
