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Task #6915 (closed)

Opened 13 years ago

Closed 13 years ago

BUG:Import MetaMorph

Reported by: omero-qa Owned by: mlinkert
Priority: minor Milestone: Unscheduled
Component: from QA Version: n.a.
Keywords: n.a. Cc: john.lim@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

http://qa.openmicroscopy.org.uk/qa/feedback/4008/

Comment: Unable to import a MetaMorph? 7.7 multi-position .nd file

loci.formats.FormatException: Invalid image number: 1 (series=0, imageCount=1)
	at loci.formats.FormatTools.checkPlaneNumber(FormatTools.java:724)
	at loci.formats.FormatTools.checkPlaneParameters(FormatTools.java:713)
	at loci.formats.in.MinimalTiffReader.openBytes(MinimalTiffReader.java:251)
	at loci.formats.in.MetamorphReader.openBytes(MetamorphReader.java:221)
	at loci.formats.in.MetamorphReader.openBytes(MetamorphReader.java:236)
	at loci.formats.ImageReader.openBytes(ImageReader.java:394)
	at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:183)
	at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:209)
	at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:304)
	at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:260)
	at ome.formats.importer.ImportLibrary.writeDataTileBased(ImportLibrary.java:786)
	at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:711)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:488)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6314)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1175)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Unknown Source)

Change History (1)

comment:1 Changed 13 years ago by mlinkert

  • Resolution set to fixed
  • Status changed from new to closed

This dataset opens correctly using the latest revision of bioformats.git:develop.

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