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Task #7792 (closed)

Opened 8 years ago

Closed 7 years ago

BUG:Division by 0

Reported by: omero-qa Owned by: cxallan
Priority: minor Milestone: OMERO-4.4
Component: Import Version: n.a.
Keywords: n.a. Cc: karl.garsha@…, mlinkert
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description

http://qa.openmicroscopy.org.uk/qa/feedback/4124/

Comment: OMERO is great. I'm just getting my feet wet but this is exactly what we need for research use (biologists, chemists, physicists, engineers, analytical imaging scientists working together). Everyone has thier favorite tools (matlab, fiji/java, python, c).

We work with n-dimensional hyperspectral data, unmixed to 32-bit analyte layers. Text is one common format we can save files to; I work in python and read these in to numpy arrays. I believe some in our group may use 32-bit floating point tiff, but some of my libraries will choke on reading in floating point image formats. So I'm testing OMERO support of text images.

java.lang.ArithmeticException: / by zero
	at ome.formats.importer.ImportLibrary.writeDataTileBased(ImportLibrary.java:839)
	at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:796)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:573)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6402)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1191)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Unknown Source)

Change History (2)

comment:1 Changed 7 years ago by jburel

  • Component changed from from QA to Import
  • Milestone changed from Unscheduled to OMERO-Beta4.4

To review during import testing phase.

comment:2 Changed 7 years ago by cxallan

  • Cc mlinkert-x added
  • Resolution set to worksforme
  • Status changed from new to closed

Import has been updated for 4.4.0. As we don't have the source data or the import log files it's very difficult to be any more confident that the problem has been addressed. Closing as worksforme. If we need to re-open related tickets during the import testing phase we can. This is similar to what we've already done for #7398.

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