Task #8212 (closed)
Opened 12 years ago
Closed 12 years ago
Bug: LEI 'Series 2 name'
| Reported by: | wmoore | Owned by: | wmoore |
|---|---|---|---|
| Priority: | minor | Milestone: | OMERO-4.4 |
| Component: | Bio-Formats | Version: | n.a. |
| Keywords: | n.a. | Cc: | |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
In Martin's sample-files.lei BF is reading one of the Image names as
XZY-Ch-trans_y000
Which appears in the 'Original Metadata key-value pairs as
Series 2 Name XZY-Ch-trans_y000
However, the Image in the Leica metadata XML is simply
<Name>XY-Ch-trans</Name>
Which appears in Original Metadata as
Series name XZY-Ch-trans
Seems like this is the one we should be using to name the image.
The diff I have with ome.xml repo now is
- <Image ID="Image:2" Name="XZY-Ch-trans"> + <Image ID="Image:2" Name="XZY-Ch-trans_y000">
Change History (2)
comment:1 Changed 12 years ago by mlinkert
- Owner changed from mlinkert-x to wmoore
comment:2 Changed 12 years ago by wmoore
- Resolution set to fixed
- Status changed from new to closed
Looking good. Closing...
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Should be fixed with https://github.com/melissalinkert/bioformats/commit/c5c64fe7e0f06902613c9f91e9f1598f2f8420f2
Looking at the Image names for sample-files.lei a little more, it looks like Image:3 should have the name "XY-lambda" instead of "XY-lambda_la000" (the former is what c5c64fe will populate).