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Task #9095 (closed)

Opened 12 years ago

Closed 12 years ago

Bug: Import failure for sbig (M81 M:40s)

Reported by:	rleigh	Owned by:	jburel
Priority:	major	Milestone:	OMERO-4.4
Component:	Insight	Version:	n.a.
Keywords:	n.a.	Cc:
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description

Image did in fact import. (read-annotate-1/user-5/Import/sbig.)

java.lang.ArrayIndexOutOfBoundsException: 0
	at ome.formats.OMEROMetadataStoreClient.setChannelGlobalMinMax(OMEROMetadataStoreClient.java:2560)
	at loci.formats.MinMaxCalculator.updateMinMax(MinMaxCalculator.java:362)
	at ome.formats.importer.OMEROWrapper.updateMinMax(OMEROWrapper.java:233)
	at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:262)
	at ome.formats.importer.ImportLibrary.writeDataTileBased(ImportLibrary.java:872)
	at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:797)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:573)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6253)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:200)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1395)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:86)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:55)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:113)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:679)

	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6301)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:200)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1395)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:86)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:55)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:113)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:679)
Caused by: java.lang.ArrayIndexOutOfBoundsException: 0
	at ome.formats.OMEROMetadataStoreClient.setChannelGlobalMinMax(OMEROMetadataStoreClient.java:2560)
	at loci.formats.MinMaxCalculator.updateMinMax(MinMaxCalculator.java:362)
	at ome.formats.importer.OMEROWrapper.updateMinMax(OMEROWrapper.java:233)
	at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:262)
	at ome.formats.importer.ImportLibrary.writeDataTileBased(ImportLibrary.java:872)
	at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:797)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:573)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6253)
	... 12 more

References

Change History (2)

comment:1 Changed 12 years ago by rleigh

Imported OK this morning with the new build (no errors)

comment:2 Changed 12 years ago by jburel

Resolution set to fixed
Status changed from new to closed

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