1 | 2013-02-14 10:00:11,185 INFO [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: gretzky.openmicroscopy.org.uk |
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2 | User Name: user-6 -- Password: *** |
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3 | |
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4 | 2013-02-14 10:02:05,133 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166 |
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5 | 2013-02-14 10:02:05,134 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013 |
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6 | 2013-02-14 10:02:05,145 INFO [ ome.formats.importer.ImportCandidates] ( Thread-37) Depth: 4 Metadata Level: MINIMUM |
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7 | 2013-02-14 10:02:05,347 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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8 | 2013-02-14 10:02:05,356 DEBUG [ ome.scifio.io.NIOByteBufferProvider] ( Thread-37) Using mapped byte buffer? false |
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9 | 2013-02-14 10:02:06,422 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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10 | 2013-02-14 10:02:06,423 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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11 | 2013-02-14 10:02:06,682 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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12 | 2013-02-14 10:02:06,683 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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13 | 2013-02-14 10:02:06,709 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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14 | 2013-02-14 10:02:06,710 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
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15 | 2013-02-14 10:02:06,754 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
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16 | 2013-02-14 10:02:06,754 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
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17 | 2013-02-14 10:02:06,759 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
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18 | 2013-02-14 10:02:06,767 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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19 | 2013-02-14 10:02:06,823 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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20 | 2013-02-14 10:02:07,212 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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21 | 2013-02-14 10:02:07,215 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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22 | 2013-02-14 10:02:07,468 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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23 | 2013-02-14 10:02:07,471 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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24 | 2013-02-14 10:02:07,684 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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25 | 2013-02-14 10:02:07,686 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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26 | 2013-02-14 10:02:08,023 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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27 | 2013-02-14 10:02:08,033 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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28 | 2013-02-14 10:02:08,460 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_002-365700055645_365700055645.txt |
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29 | 2013-02-14 10:02:08,523 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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30 | 2013-02-14 10:02:08,740 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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31 | 2013-02-14 10:02:08,740 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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32 | 2013-02-14 10:02:08,772 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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33 | 2013-02-14 10:02:08,774 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
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34 | 2013-02-14 10:02:08,776 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
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35 | 2013-02-14 10:02:08,776 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
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36 | 2013-02-14 10:02:08,780 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
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37 | 2013-02-14 10:02:08,782 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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38 | 2013-02-14 10:02:08,786 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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39 | 2013-02-14 10:02:08,991 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_003-365700055644_365700055644.txt |
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40 | 2013-02-14 10:02:09,038 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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41 | 2013-02-14 10:02:09,242 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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42 | 2013-02-14 10:02:09,242 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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43 | 2013-02-14 10:02:09,275 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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44 | 2013-02-14 10:02:09,276 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
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45 | 2013-02-14 10:02:09,278 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
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46 | 2013-02-14 10:02:09,278 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
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47 | 2013-02-14 10:02:09,283 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
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48 | 2013-02-14 10:02:09,284 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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49 | 2013-02-14 10:02:09,288 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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50 | 2013-02-14 10:02:09,468 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_004-365700055643_365700055643.txt |
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51 | 2013-02-14 10:02:09,518 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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52 | 2013-02-14 10:02:09,721 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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53 | 2013-02-14 10:02:09,721 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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54 | 2013-02-14 10:02:09,752 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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55 | 2013-02-14 10:02:09,753 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
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56 | 2013-02-14 10:02:09,755 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
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57 | 2013-02-14 10:02:09,755 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
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58 | 2013-02-14 10:02:09,760 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
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59 | 2013-02-14 10:02:09,762 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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60 | 2013-02-14 10:02:09,765 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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61 | 2013-02-14 10:02:09,962 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_005-365700055642_365700055642.txt |
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62 | 2013-02-14 10:02:10,011 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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63 | 2013-02-14 10:02:10,203 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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64 | 2013-02-14 10:02:10,203 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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65 | 2013-02-14 10:02:10,236 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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66 | 2013-02-14 10:02:10,237 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
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67 | 2013-02-14 10:02:10,239 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
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68 | 2013-02-14 10:02:10,240 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
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69 | 2013-02-14 10:02:10,244 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
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70 | 2013-02-14 10:02:10,246 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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71 | 2013-02-14 10:02:10,250 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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72 | 2013-02-14 10:02:10,440 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_006-365700055650_365700055650.txt |
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73 | 2013-02-14 10:02:10,485 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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74 | 2013-02-14 10:02:10,690 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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75 | 2013-02-14 10:02:10,690 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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76 | 2013-02-14 10:02:10,723 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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77 | 2013-02-14 10:02:10,724 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
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78 | 2013-02-14 10:02:10,726 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
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79 | 2013-02-14 10:02:10,726 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
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80 | 2013-02-14 10:02:10,731 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
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81 | 2013-02-14 10:02:10,733 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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82 | 2013-02-14 10:02:10,736 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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83 | 2013-02-14 10:02:10,918 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_007-365700055649_365700055649.txt |
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84 | 2013-02-14 10:02:10,961 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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85 | 2013-02-14 10:02:11,145 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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86 | 2013-02-14 10:02:11,145 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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87 | 2013-02-14 10:02:11,395 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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88 | 2013-02-14 10:02:11,396 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
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89 | 2013-02-14 10:02:11,398 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
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90 | 2013-02-14 10:02:11,398 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
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91 | 2013-02-14 10:02:11,403 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
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92 | 2013-02-14 10:02:11,405 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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93 | 2013-02-14 10:02:11,408 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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94 | 2013-02-14 10:02:11,576 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_008-365700055648_365700055648.txt |
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95 | 2013-02-14 10:02:11,620 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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96 | 2013-02-14 10:02:11,850 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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97 | 2013-02-14 10:02:11,850 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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98 | 2013-02-14 10:02:11,881 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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99 | 2013-02-14 10:02:11,882 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
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100 | 2013-02-14 10:02:11,884 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
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101 | 2013-02-14 10:02:11,884 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
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102 | 2013-02-14 10:02:11,888 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
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103 | 2013-02-14 10:02:11,890 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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104 | 2013-02-14 10:02:11,893 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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105 | 2013-02-14 10:02:12,067 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_009-365700055647_365700055647.txt |
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106 | 2013-02-14 10:02:12,109 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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107 | 2013-02-14 10:02:12,300 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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108 | 2013-02-14 10:02:12,300 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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109 | 2013-02-14 10:02:12,333 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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110 | 2013-02-14 10:02:12,334 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
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111 | 2013-02-14 10:02:12,336 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
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112 | 2013-02-14 10:02:12,336 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
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113 | 2013-02-14 10:02:12,340 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
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114 | 2013-02-14 10:02:12,342 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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115 | 2013-02-14 10:02:12,346 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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116 | 2013-02-14 10:02:12,514 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_010-365700055646_365700055646.txt |
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117 | 2013-02-14 10:02:12,562 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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118 | 2013-02-14 10:02:12,759 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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119 | 2013-02-14 10:02:12,759 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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120 | 2013-02-14 10:02:12,797 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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121 | 2013-02-14 10:02:12,798 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
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122 | 2013-02-14 10:02:12,799 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
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123 | 2013-02-14 10:02:12,799 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
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124 | 2013-02-14 10:02:12,803 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
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125 | 2013-02-14 10:02:12,805 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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126 | 2013-02-14 10:02:12,809 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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127 | 2013-02-14 10:02:13,010 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_011-365700055655_365700055655.txt |
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128 | 2013-02-14 10:02:13,055 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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129 | 2013-02-14 10:02:13,251 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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130 | 2013-02-14 10:02:13,251 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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131 | 2013-02-14 10:02:13,912 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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132 | 2013-02-14 10:02:13,914 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
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133 | 2013-02-14 10:02:13,917 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
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134 | 2013-02-14 10:02:13,917 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
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135 | 2013-02-14 10:02:13,924 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
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136 | 2013-02-14 10:02:13,926 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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137 | 2013-02-14 10:02:13,931 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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138 | 2013-02-14 10:02:14,354 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_012-365700055654_365700055654.txt |
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139 | 2013-02-14 10:02:14,844 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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140 | 2013-02-14 10:02:15,045 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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141 | 2013-02-14 10:02:15,045 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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142 | 2013-02-14 10:02:15,293 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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143 | 2013-02-14 10:02:15,294 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
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144 | 2013-02-14 10:02:15,296 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
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145 | 2013-02-14 10:02:15,296 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
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146 | 2013-02-14 10:02:15,301 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
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147 | 2013-02-14 10:02:15,302 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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148 | 2013-02-14 10:02:15,305 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
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149 | 2013-02-14 10:02:15,901 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_013-365700055653_365700055653.txt |
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150 | 2013-02-14 10:02:16,172 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
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151 | 2013-02-14 10:02:16,372 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
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152 | 2013-02-14 10:02:16,372 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
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153 | 2013-02-14 10:02:16,403 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
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154 | 2013-02-14 10:02:16,405 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
---|
155 | 2013-02-14 10:02:16,406 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
---|
156 | 2013-02-14 10:02:16,406 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
---|
157 | 2013-02-14 10:02:16,410 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
---|
158 | 2013-02-14 10:02:16,412 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
159 | 2013-02-14 10:02:16,415 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
160 | 2013-02-14 10:02:17,242 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_014-365700055652_365700055652.txt |
---|
161 | 2013-02-14 10:02:17,499 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
---|
162 | 2013-02-14 10:02:17,688 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
---|
163 | 2013-02-14 10:02:17,688 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
---|
164 | 2013-02-14 10:02:17,719 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
---|
165 | 2013-02-14 10:02:17,720 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
---|
166 | 2013-02-14 10:02:17,721 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
---|
167 | 2013-02-14 10:02:17,721 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
---|
168 | 2013-02-14 10:02:17,725 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
---|
169 | 2013-02-14 10:02:17,727 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
170 | 2013-02-14 10:02:17,730 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
171 | 2013-02-14 10:02:17,888 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_015-365700055651_365700055651.txt |
---|
172 | 2013-02-14 10:02:17,930 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
---|
173 | 2013-02-14 10:02:18,127 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
---|
174 | 2013-02-14 10:02:18,127 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
---|
175 | 2013-02-14 10:02:18,151 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
---|
176 | 2013-02-14 10:02:18,152 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
---|
177 | 2013-02-14 10:02:18,153 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
---|
178 | 2013-02-14 10:02:18,153 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
---|
179 | 2013-02-14 10:02:18,158 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
---|
180 | 2013-02-14 10:02:18,159 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
181 | 2013-02-14 10:02:18,163 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
182 | 2013-02-14 10:02:18,339 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_016-365700055658_365700055658.txt |
---|
183 | 2013-02-14 10:02:18,380 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
---|
184 | 2013-02-14 10:02:18,573 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
---|
185 | 2013-02-14 10:02:18,573 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
---|
186 | 2013-02-14 10:02:18,601 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
---|
187 | 2013-02-14 10:02:18,601 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
---|
188 | 2013-02-14 10:02:18,603 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
---|
189 | 2013-02-14 10:02:18,603 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
---|
190 | 2013-02-14 10:02:18,607 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
---|
191 | 2013-02-14 10:02:18,608 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
192 | 2013-02-14 10:02:18,611 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
193 | 2013-02-14 10:02:18,779 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_017-365700055657_365700055657.txt |
---|
194 | 2013-02-14 10:02:18,824 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
---|
195 | 2013-02-14 10:02:19,022 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
---|
196 | 2013-02-14 10:02:19,022 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
---|
197 | 2013-02-14 10:02:19,052 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
---|
198 | 2013-02-14 10:02:19,053 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
---|
199 | 2013-02-14 10:02:19,054 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
---|
200 | 2013-02-14 10:02:19,054 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
---|
201 | 2013-02-14 10:02:19,058 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
---|
202 | 2013-02-14 10:02:19,060 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
203 | 2013-02-14 10:02:19,063 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
204 | 2013-02-14 10:02:19,227 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_018-365700055656_365700055656.txt |
---|
205 | 2013-02-14 10:02:19,271 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
---|
206 | 2013-02-14 10:02:19,456 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
---|
207 | 2013-02-14 10:02:19,456 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
---|
208 | 2013-02-14 10:02:19,482 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
---|
209 | 2013-02-14 10:02:19,483 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
---|
210 | 2013-02-14 10:02:19,484 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
---|
211 | 2013-02-14 10:02:19,484 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
---|
212 | 2013-02-14 10:02:19,489 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
---|
213 | 2013-02-14 10:02:19,490 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
214 | 2013-02-14 10:02:19,494 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
215 | 2013-02-14 10:02:19,867 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_019-365700055660_365700055660.txt |
---|
216 | 2013-02-14 10:02:19,916 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
---|
217 | 2013-02-14 10:02:20,095 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
---|
218 | 2013-02-14 10:02:20,096 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
---|
219 | 2013-02-14 10:02:20,126 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
---|
220 | 2013-02-14 10:02:20,127 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
---|
221 | 2013-02-14 10:02:20,128 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
---|
222 | 2013-02-14 10:02:20,128 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
---|
223 | 2013-02-14 10:02:20,132 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
---|
224 | 2013-02-14 10:02:20,133 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
225 | 2013-02-14 10:02:20,137 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
226 | 2013-02-14 10:02:20,278 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_020-365700055659_365700055659.txt |
---|
227 | 2013-02-14 10:02:20,549 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
---|
228 | 2013-02-14 10:02:20,782 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
---|
229 | 2013-02-14 10:02:20,782 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
---|
230 | 2013-02-14 10:02:21,031 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
---|
231 | 2013-02-14 10:02:21,033 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
---|
232 | 2013-02-14 10:02:21,034 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
---|
233 | 2013-02-14 10:02:21,035 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
---|
234 | 2013-02-14 10:02:21,040 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
---|
235 | 2013-02-14 10:02:21,041 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
236 | 2013-02-14 10:02:21,054 INFO [ ome.formats.importer.ImportCandidates] ( Thread-37) 184 file(s) parsed into 1 group(s) with 24 call(s) to setId in 15565ms. (15908ms total) [4 unknowns] |
---|
237 | 2013-02-14 10:02:21,257 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166 |
---|
238 | 2013-02-14 10:02:21,257 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013 |
---|
239 | 2013-02-14 10:02:21,258 INFO [ ome.formats.importer.ImportCandidates] ( Thread-37) Depth: 4 Metadata Level: MINIMUM |
---|
240 | 2013-02-14 10:02:21,258 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
241 | 2013-02-14 10:02:22,618 INFO [ loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
---|
242 | 2013-02-14 10:02:22,618 INFO [ loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files |
---|
243 | 2013-02-14 10:02:22,833 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating core metadata |
---|
244 | 2013-02-14 10:02:22,833 INFO [ loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif |
---|
245 | 2013-02-14 10:02:22,871 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs |
---|
246 | 2013-02-14 10:02:22,872 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata |
---|
247 | 2013-02-14 10:02:22,873 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable |
---|
248 | 2013-02-14 10:02:22,873 INFO [ loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore |
---|
249 | 2013-02-14 10:02:22,877 WARN [ loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions. |
---|
250 | 2013-02-14 10:02:22,879 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
251 | 2013-02-14 10:02:22,881 INFO [ ome.formats.importer.ImportCandidates] ( Thread-37) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 1621ms. (1623ms total) [0 unknowns] |
---|
252 | 2013-02-14 10:02:22,881 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166 |
---|
253 | 2013-02-14 10:02:22,881 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013 |
---|
254 | 2013-02-14 10:02:23,436 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166 |
---|
255 | 2013-02-14 10:02:23,436 INFO [ ome.formats.importer.ImportConfig] ( Thread-37) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013 |
---|
256 | 2013-02-14 10:09:48,587 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
257 | 2013-02-14 10:09:48,992 DEBUG [ ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null |
---|
258 | 2013-02-14 10:09:49,373 INFO [ ome.formats.importer.ImportConfig] ( Thread-39) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166 |
---|
259 | 2013-02-14 10:09:49,373 INFO [ ome.formats.importer.ImportConfig] ( Thread-39) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013 |
---|
260 | 2013-02-14 10:09:49,375 INFO [ ome.formats.importer.ImportCandidates] ( Thread-39) Depth: 4 Metadata Level: MINIMUM |
---|
261 | 2013-02-14 10:09:49,665 DEBUG [ ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null |
---|
262 | 2013-02-14 10:09:51,226 INFO [ loci.formats.FormatHandler] ( Thread-39) MIASReader initializing /Volumes/ome/data_repo/test_images_good/mias/frans/MIAS 3 D set 2 july 13 2009/001/0018/1/001_001_000_000.tif |
---|
263 | 2013-02-14 10:09:51,226 INFO [ loci.formats.FormatHandler] ( Thread-39) Building list of TIFF files |
---|
264 | 2013-02-14 10:09:52,175 INFO [ loci.formats.FormatHandler] ( Thread-39) Populating core metadata |
---|
265 | 2013-02-14 10:09:52,175 INFO [ loci.formats.FormatHandler] ( Thread-39) MinimalTiffReader initializing /Volumes/ome/data_repo/test_images_good/mias/frans/MIAS 3 D set 2 july 13 2009/001/0018/1/001_001_000_000.tif |
---|
266 | 2013-02-14 10:09:52,212 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-39) Reading IFDs |
---|
267 | 2013-02-14 10:09:52,213 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-39) Populating metadata |
---|
268 | 2013-02-14 10:09:52,214 INFO [ loci.formats.FormatHandler] ( Thread-39) Populating metadata hashtable |
---|
269 | 2013-02-14 10:09:52,214 INFO [ loci.formats.FormatHandler] ( Thread-39) Populating MetadataStore |
---|
270 | 2013-02-14 10:09:52,217 WARN [ loci.formats.FormatHandler] ( Thread-39) Could not determine the plate dimensions. |
---|
271 | 2013-02-14 10:09:52,229 DEBUG [ ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null |
---|
272 | 2013-02-14 10:09:52,238 DEBUG [ ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null |
---|
273 | 2013-02-14 10:09:52,475 DEBUG [ ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null |
---|
274 | 2013-02-14 10:09:52,486 INFO [ ome.formats.importer.ImportCandidates] ( Thread-39) 204 file(s) parsed into 1 group(s) with 2 call(s) to setId in 2801ms. (3112ms total) [1 unknowns] |
---|
275 | 2013-02-14 10:09:52,542 INFO [ ome.formats.importer.ImportConfig] ( Thread-39) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166 |
---|
276 | 2013-02-14 10:09:52,542 INFO [ ome.formats.importer.ImportConfig] ( Thread-39) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013 |
---|
277 | 2013-02-14 10:09:52,544 INFO [ ome.formats.importer.ImportCandidates] ( Thread-39) Depth: 4 Metadata Level: MINIMUM |
---|
278 | 2013-02-14 10:09:52,544 DEBUG [ ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null |
---|
279 | 2013-02-14 10:09:53,415 INFO [ loci.formats.FormatHandler] ( Thread-39) MIASReader initializing /Volumes/ome/data_repo/test_images_good/mias/frans/MIAS 3 D set 2 july 13 2009/001/0018/1/001_001_000_000.tif |
---|
280 | 2013-02-14 10:09:53,415 INFO [ loci.formats.FormatHandler] ( Thread-39) Building list of TIFF files |
---|
281 | 2013-02-14 10:09:53,810 INFO [ loci.formats.FormatHandler] ( Thread-39) Populating core metadata |
---|
282 | 2013-02-14 10:09:53,810 INFO [ loci.formats.FormatHandler] ( Thread-39) MinimalTiffReader initializing /Volumes/ome/data_repo/test_images_good/mias/frans/MIAS 3 D set 2 july 13 2009/001/0018/1/001_001_000_000.tif |
---|
283 | 2013-02-14 10:09:53,842 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-39) Reading IFDs |
---|
284 | 2013-02-14 10:09:53,843 INFO [ loci.formats.in.MinimalTiffReader] ( Thread-39) Populating metadata |
---|
285 | 2013-02-14 10:09:53,844 INFO [ loci.formats.FormatHandler] ( Thread-39) Populating metadata hashtable |
---|
286 | 2013-02-14 10:09:53,844 INFO [ loci.formats.FormatHandler] ( Thread-39) Populating MetadataStore |
---|
287 | 2013-02-14 10:09:53,846 WARN [ loci.formats.FormatHandler] ( Thread-39) Could not determine the plate dimensions. |
---|
288 | 2013-02-14 10:09:53,858 DEBUG [ ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null |
---|
289 | 2013-02-14 10:09:53,870 INFO [ ome.formats.importer.ImportCandidates] ( Thread-39) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 1314ms. (1326ms total) [0 unknowns] |
---|
290 | 2013-02-14 10:09:53,871 INFO [ ome.formats.importer.ImportConfig] ( Thread-39) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166 |
---|
291 | 2013-02-14 10:09:53,871 INFO [ ome.formats.importer.ImportConfig] ( Thread-39) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013 |
---|
292 | 2013-02-14 10:09:53,917 INFO [ ome.formats.importer.ImportConfig] ( Thread-39) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166 |
---|
293 | 2013-02-14 10:09:53,917 INFO [ ome.formats.importer.ImportConfig] ( Thread-39) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013 |
---|
294 | 2013-02-14 10:13:04,872 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0 |
---|
295 | 2013-02-14 10:37:20,909 DEBUG [ ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null |
---|
296 | 2013-02-14 10:41:42,219 ERROR [py.shoola.env.data.OmeroImageServiceImpl] ( Thread-91) Cannot get thumbnail |
---|
297 | 2013-02-14 10:41:42,631 ERROR [ola.agents.dataBrowser.TabularDataLoader] (entQueue-0) State: 3Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
298 | Cannot load the table: -1 |
---|
299 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
300 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6837) |
---|
301 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadTabularData(OmeroMetadataServiceImpl.java:1996) |
---|
302 | at org.openmicroscopy.shoola.env.data.views.calls.TabularDataLoader$1.doCall(TabularDataLoader.java:74) |
---|
303 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
304 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
305 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
306 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
307 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
308 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
309 | at java.lang.Thread.run(Thread.java:680) |
---|
310 | Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
311 | Cannot find annotations for class pojos.PlateData. |
---|
312 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
313 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
314 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6804) |
---|
315 | ... 9 more |
---|
316 | Caused by: Ice.ConnectionLostException |
---|
317 | error = 0 |
---|
318 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
319 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
320 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
321 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
322 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
323 | ... 10 more |
---|
324 | State: 3Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
325 | Cannot load the table: -1 |
---|
326 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
327 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6837) |
---|
328 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadTabularData(OmeroMetadataServiceImpl.java:1996) |
---|
329 | at org.openmicroscopy.shoola.env.data.views.calls.TabularDataLoader$1.doCall(TabularDataLoader.java:74) |
---|
330 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
331 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
332 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
333 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
334 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
335 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
336 | at java.lang.Thread.run(Thread.java:680) |
---|
337 | Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
338 | Cannot find annotations for class pojos.PlateData. |
---|
339 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
340 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
341 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6804) |
---|
342 | ... 9 more |
---|
343 | Caused by: Ice.ConnectionLostException |
---|
344 | error = 0 |
---|
345 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
346 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
347 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
348 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
349 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
350 | ... 10 more |
---|
351 | Exception in thread "AWT-EventQueue-0" |
---|
352 | |
---|
353 | 2013-02-14 10:41:42,652 DEBUG [ ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null |
---|
354 | 2013-02-14 10:41:42,672 WARN [ ome.formats.OMEROMetadataStoreClient] ( Thread-39) Exception closing "2674311a-8e33-4ce6-a409-a1634a560f1c/86:24:41:e3:-1f6b31aa:13cd7bd7c02:-7567omero.api.RawFileStore" -t:tcp -h 134.36.65.227 -p 45625 |
---|
355 | Ice.ConnectionLostException |
---|
356 | error = 0 |
---|
357 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
358 | at omero.api._ServiceFactoryDelM.keepAlive(_ServiceFactoryDelM.java:1526) |
---|
359 | at omero.api.ServiceFactoryPrxHelper.keepAlive(ServiceFactoryPrxHelper.java:1605) |
---|
360 | at omero.api.ServiceFactoryPrxHelper.keepAlive(ServiceFactoryPrxHelper.java:1577) |
---|
361 | at org.openmicroscopy.shoola.env.data.Connector.ping(Connector.java:703) |
---|
362 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isSessionAlive(OMEROGateway.java:439) |
---|
363 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getFreeSpace(OMEROGateway.java:4545) |
---|
364 | at org.openmicroscopy.shoola.env.data.AdminServiceImpl.getQuota(AdminServiceImpl.java:191) |
---|
365 | at org.openmicroscopy.shoola.env.data.views.calls.AdminLoader$1.doCall(AdminLoader.java:104) |
---|
366 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
367 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
368 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
369 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
370 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
371 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
372 | at java.lang.Thread.run(Thread.java:680) |
---|
373 | 2013-02-14 10:41:42,687 WARN [ ome.formats.OMEROMetadataStoreClient] ( Thread-39) Exception closing "2674311a-8e33-4ce6-a409-a1634a560f1c/86:24:41:e3:-1f6b31aa:13cd7bd7c02:-7566omero.api.RawPixelsStore" -t:tcp -h 134.36.65.227 -p 45625 |
---|
374 | Ice.ConnectionLostException |
---|
375 | error = 0 |
---|
376 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
377 | at omero.api._ServiceFactoryDelM.keepAllAlive(_ServiceFactoryDelM.java:1579) |
---|
378 | at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:1650) |
---|
379 | at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:1622) |
---|
380 | at org.openmicroscopy.shoola.env.data.Connector.keepSessionAlive(Connector.java:710) |
---|
381 | at org.openmicroscopy.shoola.env.data.OMEROGateway.keepSessionAlive(OMEROGateway.java:5578) |
---|
382 | at org.openmicroscopy.shoola.env.data.KeepClientAlive.run(KeepClientAlive.java:63) |
---|
383 | at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441) |
---|
384 | at java.util.concurrent.FutureTask$Sync.innerRunAndReset(FutureTask.java:317) |
---|
385 | at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:150) |
---|
386 | at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$101(ScheduledThreadPoolExecutor.java:98) |
---|
387 | at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.runPeriodic(ScheduledThreadPoolExecutor.java:180) |
---|
388 | at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:204) |
---|
389 | at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) |
---|
390 | at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) |
---|
391 | at java.lang.Thread.run(Thread.java:680) |
---|
392 | 2013-02-14 10:41:42,700 WARN [ ome.formats.OMEROMetadataStoreClient] ( Thread-39) Exception closing "2674311a-8e33-4ce6-a409-a1634a560f1c/86:24:41:e3:-1f6b31aa:13cd7bd7c02:-7565omero.api.ThumbnailStore" -t:tcp -h 134.36.65.227 -p 45625 |
---|
393 | Ice.ConnectionLostException |
---|
394 | error = 0 |
---|
395 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
396 | at omero.api._ServiceFactoryDelM.keepAlive(_ServiceFactoryDelM.java:1526) |
---|
397 | at omero.api.ServiceFactoryPrxHelper.keepAlive(ServiceFactoryPrxHelper.java:1605) |
---|
398 | at omero.api.ServiceFactoryPrxHelper.keepAlive(ServiceFactoryPrxHelper.java:1577) |
---|
399 | at org.openmicroscopy.shoola.env.data.Connector.ping(Connector.java:703) |
---|
400 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isSessionAlive(OMEROGateway.java:439) |
---|
401 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getFreeSpace(OMEROGateway.java:4545) |
---|
402 | at org.openmicroscopy.shoola.env.data.AdminServiceImpl.getQuota(AdminServiceImpl.java:191) |
---|
403 | at org.openmicroscopy.shoola.env.data.views.calls.AdminLoader$1.doCall(AdminLoader.java:104) |
---|
404 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
405 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
406 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
407 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
408 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
409 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
410 | at java.lang.Thread.run(Thread.java:680) |
---|
411 | 2013-02-14 10:41:42,712 WARN [ ome.formats.OMEROMetadataStoreClient] ( Thread-39) Exception closing 2674311a-8e33-4ce6-a409-a1634a560f1c/49dc7284-19d6-4d20-b94f-a000d55ce56eomero.api.MetadataStore -t:tcp -h 134.36.65.227 -p 45625 |
---|
412 | Ice.ConnectionLostException |
---|
413 | error = 0 |
---|
414 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
415 | at omero.api._ServiceFactoryDelM.keepAlive(_ServiceFactoryDelM.java:1526) |
---|
416 | at omero.api.ServiceFactoryPrxHelper.keepAlive(ServiceFactoryPrxHelper.java:1605) |
---|
417 | at omero.api.ServiceFactoryPrxHelper.keepAlive(ServiceFactoryPrxHelper.java:1577) |
---|
418 | at org.openmicroscopy.shoola.env.data.Connector.ping(Connector.java:703) |
---|
419 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isSessionAlive(OMEROGateway.java:439) |
---|
420 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2727) |
---|
421 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
422 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
423 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
424 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
425 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
426 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
427 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
428 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
429 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
430 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
431 | at java.lang.Thread.run(Thread.java:680) |
---|
432 | 2013-02-14 10:41:42,714 DEBUG [ ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null |
---|
433 | 2013-02-14 10:41:42,744 WARN [ents.fsimporter.util.FileImportComponent] ( Thread-39) Error during import: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
434 | Cannot find images for class pojos.ImageData. |
---|
435 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
436 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2836) |
---|
437 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6654) |
---|
438 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595) |
---|
439 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:205) |
---|
440 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1338) |
---|
441 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) |
---|
442 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) |
---|
443 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) |
---|
444 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
445 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
446 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
447 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
448 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
449 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
450 | at java.lang.Thread.run(Thread.java:680) |
---|
451 | Caused by: Ice.ConnectionLostException |
---|
452 | error = 0 |
---|
453 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
454 | at omero.api._IContainerDelM.getImages(_IContainerDelM.java:362) |
---|
455 | at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:466) |
---|
456 | at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:438) |
---|
457 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2833) |
---|
458 | ... 14 more |
---|
459 | |
---|
460 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6665) |
---|
461 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595) |
---|
462 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:205) |
---|
463 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1338) |
---|
464 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) |
---|
465 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) |
---|
466 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) |
---|
467 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
468 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
469 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
470 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
471 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
472 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
473 | at java.lang.Thread.run(Thread.java:680) |
---|
474 | Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
475 | Cannot find images for class pojos.ImageData. |
---|
476 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
477 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2836) |
---|
478 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6654) |
---|
479 | ... 13 more |
---|
480 | Caused by: Ice.ConnectionLostException |
---|
481 | error = 0 |
---|
482 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
483 | at omero.api._IContainerDelM.getImages(_IContainerDelM.java:362) |
---|
484 | at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:466) |
---|
485 | at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:438) |
---|
486 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2833) |
---|
487 | ... 14 more |
---|
488 | Error during import: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
489 | Cannot find images for class pojos.ImageData. |
---|
490 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
491 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2836) |
---|
492 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6654) |
---|
493 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595) |
---|
494 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:205) |
---|
495 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1338) |
---|
496 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) |
---|
497 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) |
---|
498 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) |
---|
499 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
500 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
501 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
502 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
503 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
504 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
505 | at java.lang.Thread.run(Thread.java:680) |
---|
506 | Caused by: Ice.ConnectionLostException |
---|
507 | error = 0 |
---|
508 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
509 | at omero.api._IContainerDelM.getImages(_IContainerDelM.java:362) |
---|
510 | at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:466) |
---|
511 | at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:438) |
---|
512 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2833) |
---|
513 | ... 14 more |
---|
514 | |
---|
515 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6665) |
---|
516 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595) |
---|
517 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:205) |
---|
518 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1338) |
---|
519 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) |
---|
520 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) |
---|
521 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) |
---|
522 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
523 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
524 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
525 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
526 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
527 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
528 | at java.lang.Thread.run(Thread.java:680) |
---|
529 | Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
530 | Cannot find images for class pojos.ImageData. |
---|
531 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
532 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2836) |
---|
533 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6654) |
---|
534 | ... 13 more |
---|
535 | Caused by: Ice.ConnectionLostException |
---|
536 | error = 0 |
---|
537 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
538 | at omero.api._IContainerDelM.getImages(_IContainerDelM.java:362) |
---|
539 | at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:466) |
---|
540 | at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:438) |
---|
541 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2833) |
---|
542 | ... 14 more |
---|
543 | Exception in thread "Thread-39" |
---|
544 | |
---|
545 | 2013-02-14 10:41:42,770 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
546 | Cannot find annotations for class pojos.ImageData. |
---|
547 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
548 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
549 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
550 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
551 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
552 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
553 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
554 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
555 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
556 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
557 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
558 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
559 | at java.lang.Thread.run(Thread.java:680) |
---|
560 | Caused by: Ice.ConnectionLostException |
---|
561 | error = 0 |
---|
562 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
563 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
564 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
565 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
566 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
567 | ... 11 more |
---|
568 | State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
569 | Cannot find annotations for class pojos.ImageData. |
---|
570 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
571 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
572 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
573 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
574 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
575 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
576 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
577 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
578 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
579 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
580 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
581 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
582 | at java.lang.Thread.run(Thread.java:680) |
---|
583 | Caused by: Ice.ConnectionLostException |
---|
584 | error = 0 |
---|
585 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
586 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
587 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
588 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
589 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
590 | ... 11 more |
---|
591 | Exception in thread "AWT-EventQueue-0" |
---|
592 | |
---|
593 | 2013-02-14 10:41:42,821 ERROR [a.agents.metadata.RenderingControlLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
594 | Cannot access the Rendering Engine for 831 |
---|
595 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
596 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getRenderingService(OMEROGateway.java:1766) |
---|
597 | at org.openmicroscopy.shoola.env.data.OMEROGateway.generateRenderingEngine(OMEROGateway.java:3372) |
---|
598 | at org.openmicroscopy.shoola.env.data.OMEROGateway.createRenderingEngine(OMEROGateway.java:3353) |
---|
599 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:576) |
---|
600 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
601 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
602 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
603 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
604 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
605 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
606 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
607 | at java.lang.Thread.run(Thread.java:680) |
---|
608 | Caused by: Ice.ConnectionLostException |
---|
609 | error = 0 |
---|
610 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
611 | at omero.api._ServiceFactoryDelM.createRenderingEngine(_ServiceFactoryDelM.java:456) |
---|
612 | at omero.api.ServiceFactoryPrxHelper.createRenderingEngine(ServiceFactoryPrxHelper.java:524) |
---|
613 | at omero.api.ServiceFactoryPrxHelper.createRenderingEngine(ServiceFactoryPrxHelper.java:496) |
---|
614 | at org.openmicroscopy.shoola.env.data.Connector.getRenderingService(Connector.java:499) |
---|
615 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getRenderingService(OMEROGateway.java:1763) |
---|
616 | ... 11 more |
---|
617 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
618 | Cannot access the Rendering Engine for 831 |
---|
619 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
620 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getRenderingService(OMEROGateway.java:1766) |
---|
621 | at org.openmicroscopy.shoola.env.data.OMEROGateway.generateRenderingEngine(OMEROGateway.java:3372) |
---|
622 | at org.openmicroscopy.shoola.env.data.OMEROGateway.createRenderingEngine(OMEROGateway.java:3353) |
---|
623 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:576) |
---|
624 | at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97) |
---|
625 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
626 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
627 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
628 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
629 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
630 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
631 | at java.lang.Thread.run(Thread.java:680) |
---|
632 | Caused by: Ice.ConnectionLostException |
---|
633 | error = 0 |
---|
634 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
635 | at omero.api._ServiceFactoryDelM.createRenderingEngine(_ServiceFactoryDelM.java:456) |
---|
636 | at omero.api.ServiceFactoryPrxHelper.createRenderingEngine(ServiceFactoryPrxHelper.java:524) |
---|
637 | at omero.api.ServiceFactoryPrxHelper.createRenderingEngine(ServiceFactoryPrxHelper.java:496) |
---|
638 | at org.openmicroscopy.shoola.env.data.Connector.getRenderingService(Connector.java:499) |
---|
639 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getRenderingService(OMEROGateway.java:1763) |
---|
640 | ... 11 more |
---|
641 | Exception in thread "AWT-EventQueue-0" |
---|
642 | |
---|
643 | 2013-02-14 10:41:42,841 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
644 | Cannot start the Raw pixels store. |
---|
645 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
646 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8232) |
---|
647 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1926) |
---|
648 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
649 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
650 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
651 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
652 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
653 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
654 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
655 | at java.lang.Thread.run(Thread.java:680) |
---|
656 | Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
657 | Cannot access the RawPixelsStore service. |
---|
658 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
659 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1797) |
---|
660 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8226) |
---|
661 | ... 9 more |
---|
662 | Caused by: Ice.ConnectionLostException |
---|
663 | error = 0 |
---|
664 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
665 | at omero.api._ServiceFactoryDelM.createRawPixelsStore(_ServiceFactoryDelM.java:412) |
---|
666 | at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:479) |
---|
667 | at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:451) |
---|
668 | at org.openmicroscopy.shoola.env.data.Connector.getPixelsStore(Connector.java:516) |
---|
669 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1794) |
---|
670 | ... 10 more |
---|
671 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
672 | Cannot start the Raw pixels store. |
---|
673 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
674 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8232) |
---|
675 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1926) |
---|
676 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
677 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
678 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
679 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
680 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
681 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
682 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
683 | at java.lang.Thread.run(Thread.java:680) |
---|
684 | Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
685 | Cannot access the RawPixelsStore service. |
---|
686 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
687 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1797) |
---|
688 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8226) |
---|
689 | ... 9 more |
---|
690 | Caused by: Ice.ConnectionLostException |
---|
691 | error = 0 |
---|
692 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
693 | at omero.api._ServiceFactoryDelM.createRawPixelsStore(_ServiceFactoryDelM.java:412) |
---|
694 | at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:479) |
---|
695 | at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:451) |
---|
696 | at org.openmicroscopy.shoola.env.data.Connector.getPixelsStore(Connector.java:516) |
---|
697 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1794) |
---|
698 | ... 10 more |
---|
699 | Exception in thread "AWT-EventQueue-0" |
---|
700 | |
---|
701 | 2013-02-14 10:41:42,869 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
702 | Cannot find annotations for class pojos.ImageData. |
---|
703 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
704 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
705 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
706 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
707 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
708 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
709 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
710 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
711 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
712 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
713 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
714 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
715 | at java.lang.Thread.run(Thread.java:680) |
---|
716 | Caused by: Ice.ConnectionLostException |
---|
717 | error = 0 |
---|
718 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
719 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
720 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
721 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
722 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
723 | ... 11 more |
---|
724 | State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
725 | Cannot find annotations for class pojos.ImageData. |
---|
726 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
727 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
728 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
729 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
730 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
731 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
732 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
733 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
734 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
735 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
736 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
737 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
738 | at java.lang.Thread.run(Thread.java:680) |
---|
739 | Caused by: Ice.ConnectionLostException |
---|
740 | error = 0 |
---|
741 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
742 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
743 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
744 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
745 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
746 | ... 11 more |
---|
747 | Exception in thread "AWT-EventQueue-0" |
---|
748 | |
---|
749 | 2013-02-14 10:41:42,879 INFO [ ome.formats.importer.ImportConfig] (Thread-106) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166 |
---|
750 | 2013-02-14 10:41:42,880 INFO [ ome.formats.importer.ImportConfig] (Thread-106) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013 |
---|
751 | 2013-02-14 10:41:42,913 INFO [ ome.formats.importer.ImportCandidates] (Thread-106) Depth: 4 Metadata Level: MINIMUM |
---|
752 | 2013-02-14 10:41:42,915 DEBUG [ ome.scifio.io.Location] (Thread-106) Location.mapFile: embedded-stream.raw -> null |
---|
753 | 2013-02-14 10:41:42,951 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
754 | Cannot start the Raw pixels store. |
---|
755 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
756 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8232) |
---|
757 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1926) |
---|
758 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
759 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
760 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
761 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
762 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
763 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
764 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
765 | at java.lang.Thread.run(Thread.java:680) |
---|
766 | Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
767 | Cannot access the RawPixelsStore service. |
---|
768 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
769 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1797) |
---|
770 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8226) |
---|
771 | ... 9 more |
---|
772 | Caused by: Ice.ConnectionLostException |
---|
773 | error = 0 |
---|
774 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
775 | at omero.api._ServiceFactoryDelM.createRawPixelsStore(_ServiceFactoryDelM.java:412) |
---|
776 | at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:479) |
---|
777 | at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:451) |
---|
778 | at org.openmicroscopy.shoola.env.data.Connector.getPixelsStore(Connector.java:516) |
---|
779 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1794) |
---|
780 | ... 10 more |
---|
781 | Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
782 | Cannot start the Raw pixels store. |
---|
783 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
784 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8232) |
---|
785 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1926) |
---|
786 | at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100) |
---|
787 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
788 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
789 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
790 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
791 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
792 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
793 | at java.lang.Thread.run(Thread.java:680) |
---|
794 | Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
795 | Cannot access the RawPixelsStore service. |
---|
796 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
797 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1797) |
---|
798 | at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8226) |
---|
799 | ... 9 more |
---|
800 | Caused by: Ice.ConnectionLostException |
---|
801 | error = 0 |
---|
802 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
803 | at omero.api._ServiceFactoryDelM.createRawPixelsStore(_ServiceFactoryDelM.java:412) |
---|
804 | at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:479) |
---|
805 | at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:451) |
---|
806 | at org.openmicroscopy.shoola.env.data.Connector.getPixelsStore(Connector.java:516) |
---|
807 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1794) |
---|
808 | ... 10 more |
---|
809 | Exception in thread "AWT-EventQueue-0" |
---|
810 | |
---|
811 | 2013-02-14 10:41:42,981 ERROR [ola.agents.dataBrowser.TabularDataLoader] (entQueue-0) State: 3Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
812 | Cannot load the table: -1 |
---|
813 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
814 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6837) |
---|
815 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadTabularData(OmeroMetadataServiceImpl.java:1996) |
---|
816 | at org.openmicroscopy.shoola.env.data.views.calls.TabularDataLoader$1.doCall(TabularDataLoader.java:74) |
---|
817 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
818 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
819 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
820 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
821 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
822 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
823 | at java.lang.Thread.run(Thread.java:680) |
---|
824 | Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
825 | Cannot find annotations for class pojos.ScreenData. |
---|
826 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
827 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
828 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6804) |
---|
829 | ... 9 more |
---|
830 | Caused by: Ice.ConnectionLostException |
---|
831 | error = 0 |
---|
832 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
833 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
834 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
835 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
836 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
837 | ... 10 more |
---|
838 | State: 3Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
839 | Cannot load the table: -1 |
---|
840 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
841 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6837) |
---|
842 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadTabularData(OmeroMetadataServiceImpl.java:1996) |
---|
843 | at org.openmicroscopy.shoola.env.data.views.calls.TabularDataLoader$1.doCall(TabularDataLoader.java:74) |
---|
844 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
845 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
846 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
847 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
848 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
849 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
850 | at java.lang.Thread.run(Thread.java:680) |
---|
851 | Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
852 | Cannot find annotations for class pojos.ScreenData. |
---|
853 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
854 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
855 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6804) |
---|
856 | ... 9 more |
---|
857 | Caused by: Ice.ConnectionLostException |
---|
858 | error = 0 |
---|
859 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
860 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
861 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
862 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
863 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
864 | ... 10 more |
---|
865 | Exception in thread "AWT-EventQueue-0" |
---|
866 | |
---|
867 | 2013-02-14 10:41:44,806 DEBUG [ ome.xml.model.OME] (Thread-106) Expecting node name of OME got scn |
---|
868 | 2013-02-14 10:41:45,591 INFO [ loci.formats.FormatHandler] (Thread-106) LeicaSCNReader initializing /Volumes/ome/data_repo/test_images_good/leica-scn/mihaela/UCLAD_0000000280_2011-02-10 13_32_55Z.scn |
---|
869 | 2013-02-14 10:41:45,636 INFO [ loci.formats.in.MinimalTiffReader] (Thread-106) Reading IFDs |
---|
870 | 2013-02-14 10:41:45,990 INFO [ loci.formats.in.MinimalTiffReader] (Thread-106) Populating metadata |
---|
871 | 2013-02-14 10:41:46,023 INFO [ loci.formats.in.BaseTiffReader] (Thread-106) Populating OME metadata |
---|
872 | 2013-02-14 10:41:46,025 DEBUG [ ome.scifio.io.Location] (Thread-106) Location.mapFile: embedded-stream.raw -> null |
---|
873 | 2013-02-14 10:41:46,027 INFO [ ome.formats.importer.ImportCandidates] (Thread-106) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 3110ms. (3114ms total) [0 unknowns] |
---|
874 | 2013-02-14 10:41:46,027 INFO [ ome.formats.importer.ImportConfig] (Thread-106) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166 |
---|
875 | 2013-02-14 10:41:46,028 INFO [ ome.formats.importer.ImportConfig] (Thread-106) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013 |
---|
876 | 2013-02-14 10:41:46,047 WARN [ents.fsimporter.util.FileImportComponent] (entQueue-0) Error during import: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
877 | Cannot access Import service. |
---|
878 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
879 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1346) |
---|
880 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6608) |
---|
881 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595) |
---|
882 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1259) |
---|
883 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) |
---|
884 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) |
---|
885 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) |
---|
886 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
887 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
888 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
889 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
890 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
891 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
892 | at java.lang.Thread.run(Thread.java:680) |
---|
893 | Caused by: Ice.ConnectionLostException |
---|
894 | error = 0 |
---|
895 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
896 | at omero.api._ServiceFactoryDelM.getAdminService(_ServiceFactoryDelM.java:627) |
---|
897 | at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:705) |
---|
898 | at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:677) |
---|
899 | at ome.formats.OMEROMetadataStoreClient.initializeServices(OMEROMetadataStoreClient.java:400) |
---|
900 | at ome.formats.OMEROMetadataStoreClient.initialize(OMEROMetadataStoreClient.java:486) |
---|
901 | at org.openmicroscopy.shoola.env.data.Connector.getImportStore(Connector.java:255) |
---|
902 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1343) |
---|
903 | ... 13 more |
---|
904 | |
---|
905 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6665) |
---|
906 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595) |
---|
907 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1259) |
---|
908 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) |
---|
909 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) |
---|
910 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) |
---|
911 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
912 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
913 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
914 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
915 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
916 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
917 | at java.lang.Thread.run(Thread.java:680) |
---|
918 | Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
919 | Cannot access Import service. |
---|
920 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
921 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1346) |
---|
922 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6608) |
---|
923 | ... 12 more |
---|
924 | Caused by: Ice.ConnectionLostException |
---|
925 | error = 0 |
---|
926 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
927 | at omero.api._ServiceFactoryDelM.getAdminService(_ServiceFactoryDelM.java:627) |
---|
928 | at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:705) |
---|
929 | at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:677) |
---|
930 | at ome.formats.OMEROMetadataStoreClient.initializeServices(OMEROMetadataStoreClient.java:400) |
---|
931 | at ome.formats.OMEROMetadataStoreClient.initialize(OMEROMetadataStoreClient.java:486) |
---|
932 | at org.openmicroscopy.shoola.env.data.Connector.getImportStore(Connector.java:255) |
---|
933 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1343) |
---|
934 | ... 13 more |
---|
935 | Error during import: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
936 | Cannot access Import service. |
---|
937 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
938 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1346) |
---|
939 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6608) |
---|
940 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595) |
---|
941 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1259) |
---|
942 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) |
---|
943 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) |
---|
944 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) |
---|
945 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
946 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
947 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
948 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
949 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
950 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
951 | at java.lang.Thread.run(Thread.java:680) |
---|
952 | Caused by: Ice.ConnectionLostException |
---|
953 | error = 0 |
---|
954 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
955 | at omero.api._ServiceFactoryDelM.getAdminService(_ServiceFactoryDelM.java:627) |
---|
956 | at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:705) |
---|
957 | at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:677) |
---|
958 | at ome.formats.OMEROMetadataStoreClient.initializeServices(OMEROMetadataStoreClient.java:400) |
---|
959 | at ome.formats.OMEROMetadataStoreClient.initialize(OMEROMetadataStoreClient.java:486) |
---|
960 | at org.openmicroscopy.shoola.env.data.Connector.getImportStore(Connector.java:255) |
---|
961 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1343) |
---|
962 | ... 13 more |
---|
963 | |
---|
964 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6665) |
---|
965 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595) |
---|
966 | at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1259) |
---|
967 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) |
---|
968 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) |
---|
969 | at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) |
---|
970 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
971 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
972 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
973 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
974 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
975 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
976 | at java.lang.Thread.run(Thread.java:680) |
---|
977 | Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
978 | Cannot access Import service. |
---|
979 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
980 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1346) |
---|
981 | at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6608) |
---|
982 | ... 12 more |
---|
983 | Caused by: Ice.ConnectionLostException |
---|
984 | error = 0 |
---|
985 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
986 | at omero.api._ServiceFactoryDelM.getAdminService(_ServiceFactoryDelM.java:627) |
---|
987 | at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:705) |
---|
988 | at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:677) |
---|
989 | at ome.formats.OMEROMetadataStoreClient.initializeServices(OMEROMetadataStoreClient.java:400) |
---|
990 | at ome.formats.OMEROMetadataStoreClient.initialize(OMEROMetadataStoreClient.java:486) |
---|
991 | at org.openmicroscopy.shoola.env.data.Connector.getImportStore(Connector.java:255) |
---|
992 | at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1343) |
---|
993 | ... 13 more |
---|
994 | Exception in thread "AWT-EventQueue-0" |
---|
995 | |
---|
996 | 2013-02-14 10:59:06,601 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
997 | Cannot find annotations for class pojos.PlateData. |
---|
998 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
999 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
1000 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
1001 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
1002 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
1003 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
1004 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1005 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1006 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1007 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1008 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1009 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1010 | at java.lang.Thread.run(Thread.java:680) |
---|
1011 | Caused by: Ice.ConnectionLostException |
---|
1012 | error = 0 |
---|
1013 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1014 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
1015 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
1016 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
1017 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
1018 | ... 11 more |
---|
1019 | State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1020 | Cannot find annotations for class pojos.PlateData. |
---|
1021 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1022 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
1023 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
1024 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
1025 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
1026 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
1027 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1028 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1029 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1030 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1031 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1032 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1033 | at java.lang.Thread.run(Thread.java:680) |
---|
1034 | Caused by: Ice.ConnectionLostException |
---|
1035 | error = 0 |
---|
1036 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1037 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
1038 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
1039 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
1040 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
1041 | ... 11 more |
---|
1042 | Exception in thread "AWT-EventQueue-0" |
---|
1043 | |
---|
1044 | 2013-02-14 10:59:29,213 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1045 | Cannot find annotations for class pojos.PlateAcquisitionData. |
---|
1046 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1047 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
1048 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
1049 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
1050 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
1051 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
1052 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1053 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1054 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1055 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1056 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1057 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1058 | at java.lang.Thread.run(Thread.java:680) |
---|
1059 | Caused by: Ice.ConnectionLostException |
---|
1060 | error = 0 |
---|
1061 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1062 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
1063 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
1064 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
1065 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
1066 | ... 11 more |
---|
1067 | State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1068 | Cannot find annotations for class pojos.PlateAcquisitionData. |
---|
1069 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1070 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
1071 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
1072 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
1073 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
1074 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
1075 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1076 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1077 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1078 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1079 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1080 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1081 | at java.lang.Thread.run(Thread.java:680) |
---|
1082 | Caused by: Ice.ConnectionLostException |
---|
1083 | error = 0 |
---|
1084 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1085 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
1086 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
1087 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
1088 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
1089 | ... 11 more |
---|
1090 | Exception in thread "AWT-EventQueue-0" |
---|
1091 | |
---|
1092 | 2013-02-14 10:59:39,296 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1093 | Cannot find annotations for class pojos.PlateData. |
---|
1094 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1095 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
1096 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
1097 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
1098 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
1099 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
1100 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1101 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1102 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1103 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1104 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1105 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1106 | at java.lang.Thread.run(Thread.java:680) |
---|
1107 | Caused by: Ice.ConnectionLostException |
---|
1108 | error = 0 |
---|
1109 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1110 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
1111 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
1112 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
1113 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
1114 | ... 11 more |
---|
1115 | State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1116 | Cannot find annotations for class pojos.PlateData. |
---|
1117 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1118 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
1119 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
1120 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
1121 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
1122 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
1123 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1124 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1125 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1126 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1127 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1128 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1129 | at java.lang.Thread.run(Thread.java:680) |
---|
1130 | Caused by: Ice.ConnectionLostException |
---|
1131 | error = 0 |
---|
1132 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1133 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
1134 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
1135 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
1136 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
1137 | ... 11 more |
---|
1138 | Exception in thread "AWT-EventQueue-0" |
---|
1139 | |
---|
1140 | 2013-02-14 11:08:08,744 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1141 | Cannot find annotations for class pojos.PlateData. |
---|
1142 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1143 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
1144 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
1145 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
1146 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
1147 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
1148 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1149 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1150 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1151 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1152 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1153 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1154 | at java.lang.Thread.run(Thread.java:680) |
---|
1155 | Caused by: Ice.ConnectionLostException |
---|
1156 | error = 0 |
---|
1157 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1158 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
1159 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
1160 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
1161 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
1162 | ... 11 more |
---|
1163 | State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1164 | Cannot find annotations for class pojos.PlateData. |
---|
1165 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1166 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
1167 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
1168 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
1169 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
1170 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
1171 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1172 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1173 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1174 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1175 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1176 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1177 | at java.lang.Thread.run(Thread.java:680) |
---|
1178 | Caused by: Ice.ConnectionLostException |
---|
1179 | error = 0 |
---|
1180 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1181 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
1182 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
1183 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
1184 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
1185 | ... 11 more |
---|
1186 | Exception in thread "AWT-EventQueue-0" |
---|
1187 | |
---|
1188 | 2013-02-14 11:13:06,072 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1189 | Cannot find annotations for class pojos.PlateData. |
---|
1190 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1191 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
1192 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
1193 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
1194 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
1195 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
1196 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1197 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1198 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1199 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1200 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1201 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1202 | at java.lang.Thread.run(Thread.java:680) |
---|
1203 | Caused by: Ice.ConnectionLostException |
---|
1204 | error = 0 |
---|
1205 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1206 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
1207 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
1208 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
1209 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
1210 | ... 11 more |
---|
1211 | State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1212 | Cannot find annotations for class pojos.PlateData. |
---|
1213 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1214 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
1215 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
1216 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
1217 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
1218 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
1219 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1220 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1221 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1222 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1223 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1224 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1225 | at java.lang.Thread.run(Thread.java:680) |
---|
1226 | Caused by: Ice.ConnectionLostException |
---|
1227 | error = 0 |
---|
1228 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1229 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
1230 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
1231 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
1232 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
1233 | ... 11 more |
---|
1234 | Exception in thread "AWT-EventQueue-0" |
---|
1235 | |
---|
1236 | 2013-02-14 11:19:40,326 ERROR [treeviewer.RefreshExperimenterDataLoader] (entQueue-0) State: 11Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1237 | Cannot load hierarchy for class pojos.ProjectData. |
---|
1238 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1239 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2649) |
---|
1240 | at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.loadContainerHierarchy(OmeroDataServiceImpl.java:221) |
---|
1241 | at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.retrieveData(DMRefreshLoader.java:122) |
---|
1242 | at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.access$100(DMRefreshLoader.java:73) |
---|
1243 | at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader$1.doCall(DMRefreshLoader.java:215) |
---|
1244 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1245 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1246 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1247 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1248 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1249 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1250 | at java.lang.Thread.run(Thread.java:680) |
---|
1251 | Caused by: Ice.ConnectionLostException |
---|
1252 | error = 0 |
---|
1253 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1254 | at omero.api._IContainerDelM.loadContainerHierarchy(_IContainerDelM.java:585) |
---|
1255 | at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:738) |
---|
1256 | at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:710) |
---|
1257 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2645) |
---|
1258 | ... 11 more |
---|
1259 | State: 11Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1260 | Cannot load hierarchy for class pojos.ProjectData. |
---|
1261 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1262 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2649) |
---|
1263 | at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.loadContainerHierarchy(OmeroDataServiceImpl.java:221) |
---|
1264 | at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.retrieveData(DMRefreshLoader.java:122) |
---|
1265 | at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.access$100(DMRefreshLoader.java:73) |
---|
1266 | at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader$1.doCall(DMRefreshLoader.java:215) |
---|
1267 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1268 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1269 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1270 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1271 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1272 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1273 | at java.lang.Thread.run(Thread.java:680) |
---|
1274 | Caused by: Ice.ConnectionLostException |
---|
1275 | error = 0 |
---|
1276 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1277 | at omero.api._IContainerDelM.loadContainerHierarchy(_IContainerDelM.java:585) |
---|
1278 | at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:738) |
---|
1279 | at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:710) |
---|
1280 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2645) |
---|
1281 | ... 11 more |
---|
1282 | Exception in thread "AWT-EventQueue-0" |
---|
1283 | |
---|
1284 | 2013-02-14 11:19:49,367 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1285 | Cannot find annotations for class pojos.GroupData. |
---|
1286 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1287 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
1288 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
1289 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
1290 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
1291 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
1292 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1293 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1294 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1295 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1296 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1297 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1298 | at java.lang.Thread.run(Thread.java:680) |
---|
1299 | Caused by: Ice.ConnectionLostException |
---|
1300 | error = 0 |
---|
1301 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1302 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
1303 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
1304 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
1305 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
1306 | ... 11 more |
---|
1307 | State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1308 | Cannot find annotations for class pojos.GroupData. |
---|
1309 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1310 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745) |
---|
1311 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046) |
---|
1312 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731) |
---|
1313 | at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835) |
---|
1314 | at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211) |
---|
1315 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1316 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1317 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1318 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1319 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1320 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1321 | at java.lang.Thread.run(Thread.java:680) |
---|
1322 | Caused by: Ice.ConnectionLostException |
---|
1323 | error = 0 |
---|
1324 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1325 | at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260) |
---|
1326 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320) |
---|
1327 | at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292) |
---|
1328 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741) |
---|
1329 | ... 11 more |
---|
1330 | Exception in thread "AWT-EventQueue-0" |
---|
1331 | |
---|
1332 | 2013-02-14 11:19:57,819 ERROR [treeviewer.RefreshExperimenterDataLoader] (entQueue-0) State: 11Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1333 | Cannot load hierarchy for class pojos.ProjectData. |
---|
1334 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1335 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2649) |
---|
1336 | at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.loadContainerHierarchy(OmeroDataServiceImpl.java:221) |
---|
1337 | at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.retrieveData(DMRefreshLoader.java:122) |
---|
1338 | at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.access$100(DMRefreshLoader.java:73) |
---|
1339 | at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader$1.doCall(DMRefreshLoader.java:215) |
---|
1340 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1341 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1342 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1343 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1344 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1345 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1346 | at java.lang.Thread.run(Thread.java:680) |
---|
1347 | Caused by: Ice.ConnectionLostException |
---|
1348 | error = 0 |
---|
1349 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1350 | at omero.api._IContainerDelM.loadContainerHierarchy(_IContainerDelM.java:585) |
---|
1351 | at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:738) |
---|
1352 | at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:710) |
---|
1353 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2645) |
---|
1354 | ... 11 more |
---|
1355 | State: 11Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. |
---|
1356 | Cannot load hierarchy for class pojos.ProjectData. |
---|
1357 | at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891) |
---|
1358 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2649) |
---|
1359 | at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.loadContainerHierarchy(OmeroDataServiceImpl.java:221) |
---|
1360 | at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.retrieveData(DMRefreshLoader.java:122) |
---|
1361 | at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.access$100(DMRefreshLoader.java:73) |
---|
1362 | at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader$1.doCall(DMRefreshLoader.java:215) |
---|
1363 | at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) |
---|
1364 | at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) |
---|
1365 | at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) |
---|
1366 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) |
---|
1367 | at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) |
---|
1368 | at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) |
---|
1369 | at java.lang.Thread.run(Thread.java:680) |
---|
1370 | Caused by: Ice.ConnectionLostException |
---|
1371 | error = 0 |
---|
1372 | at IceInternal.Outgoing.invoke(Outgoing.java:147) |
---|
1373 | at omero.api._IContainerDelM.loadContainerHierarchy(_IContainerDelM.java:585) |
---|
1374 | at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:738) |
---|
1375 | at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:710) |
---|
1376 | at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2645) |
---|
1377 | ... 11 more |
---|
1378 | Exception in thread "AWT-EventQueue-0" |
---|
1379 | |
---|