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Ticket #10381: Insight log.txt

File Insight log.txt, 123.3 KB (added by pwalczysko, 11 years ago)
Line 
12013-02-14 10:00:11,185 INFO  [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: gretzky.openmicroscopy.org.uk
2User Name: user-6 -- Password: ***
3
42013-02-14 10:02:05,133 INFO  [       ome.formats.importer.ImportConfig] ( Thread-37) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166
52013-02-14 10:02:05,134 INFO  [       ome.formats.importer.ImportConfig] ( Thread-37) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013
62013-02-14 10:02:05,145 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-37) Depth: 4 Metadata Level: MINIMUM
72013-02-14 10:02:05,347 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
82013-02-14 10:02:05,356 DEBUG [     ome.scifio.io.NIOByteBufferProvider] ( Thread-37) Using mapped byte buffer? false
92013-02-14 10:02:06,422 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
102013-02-14 10:02:06,423 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
112013-02-14 10:02:06,682 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
122013-02-14 10:02:06,683 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
132013-02-14 10:02:06,709 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
142013-02-14 10:02:06,710 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
152013-02-14 10:02:06,754 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
162013-02-14 10:02:06,754 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
172013-02-14 10:02:06,759 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
182013-02-14 10:02:06,767 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
192013-02-14 10:02:06,823 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
202013-02-14 10:02:07,212 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
212013-02-14 10:02:07,215 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
222013-02-14 10:02:07,468 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
232013-02-14 10:02:07,471 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
242013-02-14 10:02:07,684 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
252013-02-14 10:02:07,686 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
262013-02-14 10:02:08,023 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
272013-02-14 10:02:08,033 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
282013-02-14 10:02:08,460 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_002-365700055645_365700055645.txt
292013-02-14 10:02:08,523 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
302013-02-14 10:02:08,740 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
312013-02-14 10:02:08,740 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
322013-02-14 10:02:08,772 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
332013-02-14 10:02:08,774 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
342013-02-14 10:02:08,776 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
352013-02-14 10:02:08,776 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
362013-02-14 10:02:08,780 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
372013-02-14 10:02:08,782 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
382013-02-14 10:02:08,786 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
392013-02-14 10:02:08,991 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_003-365700055644_365700055644.txt
402013-02-14 10:02:09,038 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
412013-02-14 10:02:09,242 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
422013-02-14 10:02:09,242 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
432013-02-14 10:02:09,275 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
442013-02-14 10:02:09,276 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
452013-02-14 10:02:09,278 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
462013-02-14 10:02:09,278 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
472013-02-14 10:02:09,283 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
482013-02-14 10:02:09,284 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
492013-02-14 10:02:09,288 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
502013-02-14 10:02:09,468 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_004-365700055643_365700055643.txt
512013-02-14 10:02:09,518 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
522013-02-14 10:02:09,721 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
532013-02-14 10:02:09,721 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
542013-02-14 10:02:09,752 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
552013-02-14 10:02:09,753 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
562013-02-14 10:02:09,755 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
572013-02-14 10:02:09,755 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
582013-02-14 10:02:09,760 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
592013-02-14 10:02:09,762 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
602013-02-14 10:02:09,765 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
612013-02-14 10:02:09,962 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_005-365700055642_365700055642.txt
622013-02-14 10:02:10,011 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
632013-02-14 10:02:10,203 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
642013-02-14 10:02:10,203 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
652013-02-14 10:02:10,236 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
662013-02-14 10:02:10,237 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
672013-02-14 10:02:10,239 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
682013-02-14 10:02:10,240 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
692013-02-14 10:02:10,244 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
702013-02-14 10:02:10,246 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
712013-02-14 10:02:10,250 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
722013-02-14 10:02:10,440 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_006-365700055650_365700055650.txt
732013-02-14 10:02:10,485 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
742013-02-14 10:02:10,690 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
752013-02-14 10:02:10,690 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
762013-02-14 10:02:10,723 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
772013-02-14 10:02:10,724 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
782013-02-14 10:02:10,726 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
792013-02-14 10:02:10,726 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
802013-02-14 10:02:10,731 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
812013-02-14 10:02:10,733 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
822013-02-14 10:02:10,736 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
832013-02-14 10:02:10,918 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_007-365700055649_365700055649.txt
842013-02-14 10:02:10,961 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
852013-02-14 10:02:11,145 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
862013-02-14 10:02:11,145 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
872013-02-14 10:02:11,395 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
882013-02-14 10:02:11,396 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
892013-02-14 10:02:11,398 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
902013-02-14 10:02:11,398 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
912013-02-14 10:02:11,403 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
922013-02-14 10:02:11,405 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
932013-02-14 10:02:11,408 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
942013-02-14 10:02:11,576 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_008-365700055648_365700055648.txt
952013-02-14 10:02:11,620 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
962013-02-14 10:02:11,850 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
972013-02-14 10:02:11,850 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
982013-02-14 10:02:11,881 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
992013-02-14 10:02:11,882 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
1002013-02-14 10:02:11,884 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
1012013-02-14 10:02:11,884 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
1022013-02-14 10:02:11,888 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
1032013-02-14 10:02:11,890 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1042013-02-14 10:02:11,893 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1052013-02-14 10:02:12,067 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_009-365700055647_365700055647.txt
1062013-02-14 10:02:12,109 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
1072013-02-14 10:02:12,300 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
1082013-02-14 10:02:12,300 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
1092013-02-14 10:02:12,333 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
1102013-02-14 10:02:12,334 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
1112013-02-14 10:02:12,336 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
1122013-02-14 10:02:12,336 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
1132013-02-14 10:02:12,340 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
1142013-02-14 10:02:12,342 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1152013-02-14 10:02:12,346 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1162013-02-14 10:02:12,514 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_010-365700055646_365700055646.txt
1172013-02-14 10:02:12,562 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
1182013-02-14 10:02:12,759 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
1192013-02-14 10:02:12,759 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
1202013-02-14 10:02:12,797 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
1212013-02-14 10:02:12,798 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
1222013-02-14 10:02:12,799 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
1232013-02-14 10:02:12,799 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
1242013-02-14 10:02:12,803 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
1252013-02-14 10:02:12,805 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1262013-02-14 10:02:12,809 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1272013-02-14 10:02:13,010 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_011-365700055655_365700055655.txt
1282013-02-14 10:02:13,055 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
1292013-02-14 10:02:13,251 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
1302013-02-14 10:02:13,251 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
1312013-02-14 10:02:13,912 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
1322013-02-14 10:02:13,914 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
1332013-02-14 10:02:13,917 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
1342013-02-14 10:02:13,917 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
1352013-02-14 10:02:13,924 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
1362013-02-14 10:02:13,926 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1372013-02-14 10:02:13,931 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1382013-02-14 10:02:14,354 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_012-365700055654_365700055654.txt
1392013-02-14 10:02:14,844 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
1402013-02-14 10:02:15,045 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
1412013-02-14 10:02:15,045 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
1422013-02-14 10:02:15,293 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
1432013-02-14 10:02:15,294 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
1442013-02-14 10:02:15,296 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
1452013-02-14 10:02:15,296 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
1462013-02-14 10:02:15,301 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
1472013-02-14 10:02:15,302 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1482013-02-14 10:02:15,305 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1492013-02-14 10:02:15,901 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_013-365700055653_365700055653.txt
1502013-02-14 10:02:16,172 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
1512013-02-14 10:02:16,372 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
1522013-02-14 10:02:16,372 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
1532013-02-14 10:02:16,403 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
1542013-02-14 10:02:16,405 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
1552013-02-14 10:02:16,406 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
1562013-02-14 10:02:16,406 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
1572013-02-14 10:02:16,410 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
1582013-02-14 10:02:16,412 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1592013-02-14 10:02:16,415 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1602013-02-14 10:02:17,242 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_014-365700055652_365700055652.txt
1612013-02-14 10:02:17,499 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
1622013-02-14 10:02:17,688 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
1632013-02-14 10:02:17,688 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
1642013-02-14 10:02:17,719 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
1652013-02-14 10:02:17,720 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
1662013-02-14 10:02:17,721 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
1672013-02-14 10:02:17,721 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
1682013-02-14 10:02:17,725 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
1692013-02-14 10:02:17,727 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1702013-02-14 10:02:17,730 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1712013-02-14 10:02:17,888 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_015-365700055651_365700055651.txt
1722013-02-14 10:02:17,930 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
1732013-02-14 10:02:18,127 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
1742013-02-14 10:02:18,127 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
1752013-02-14 10:02:18,151 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
1762013-02-14 10:02:18,152 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
1772013-02-14 10:02:18,153 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
1782013-02-14 10:02:18,153 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
1792013-02-14 10:02:18,158 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
1802013-02-14 10:02:18,159 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1812013-02-14 10:02:18,163 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1822013-02-14 10:02:18,339 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_016-365700055658_365700055658.txt
1832013-02-14 10:02:18,380 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
1842013-02-14 10:02:18,573 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
1852013-02-14 10:02:18,573 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
1862013-02-14 10:02:18,601 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
1872013-02-14 10:02:18,601 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
1882013-02-14 10:02:18,603 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
1892013-02-14 10:02:18,603 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
1902013-02-14 10:02:18,607 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
1912013-02-14 10:02:18,608 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1922013-02-14 10:02:18,611 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
1932013-02-14 10:02:18,779 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_017-365700055657_365700055657.txt
1942013-02-14 10:02:18,824 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
1952013-02-14 10:02:19,022 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
1962013-02-14 10:02:19,022 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
1972013-02-14 10:02:19,052 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
1982013-02-14 10:02:19,053 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
1992013-02-14 10:02:19,054 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
2002013-02-14 10:02:19,054 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
2012013-02-14 10:02:19,058 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
2022013-02-14 10:02:19,060 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
2032013-02-14 10:02:19,063 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
2042013-02-14 10:02:19,227 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_018-365700055656_365700055656.txt
2052013-02-14 10:02:19,271 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
2062013-02-14 10:02:19,456 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
2072013-02-14 10:02:19,456 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
2082013-02-14 10:02:19,482 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
2092013-02-14 10:02:19,483 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
2102013-02-14 10:02:19,484 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
2112013-02-14 10:02:19,484 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
2122013-02-14 10:02:19,489 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
2132013-02-14 10:02:19,490 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
2142013-02-14 10:02:19,494 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
2152013-02-14 10:02:19,867 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_019-365700055660_365700055660.txt
2162013-02-14 10:02:19,916 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
2172013-02-14 10:02:20,095 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
2182013-02-14 10:02:20,096 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
2192013-02-14 10:02:20,126 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
2202013-02-14 10:02:20,127 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
2212013-02-14 10:02:20,128 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
2222013-02-14 10:02:20,128 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
2232013-02-14 10:02:20,132 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
2242013-02-14 10:02:20,133 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
2252013-02-14 10:02:20,137 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
2262013-02-14 10:02:20,278 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/Batchresults/NEO_PlateOutput_020-365700055659_365700055659.txt
2272013-02-14 10:02:20,549 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
2282013-02-14 10:02:20,782 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
2292013-02-14 10:02:20,782 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
2302013-02-14 10:02:21,031 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
2312013-02-14 10:02:21,033 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
2322013-02-14 10:02:21,034 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
2332013-02-14 10:02:21,035 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
2342013-02-14 10:02:21,040 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
2352013-02-14 10:02:21,041 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
2362013-02-14 10:02:21,054 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-37) 184 file(s) parsed into 1 group(s) with 24 call(s) to setId in 15565ms. (15908ms total) [4 unknowns]
2372013-02-14 10:02:21,257 INFO  [       ome.formats.importer.ImportConfig] ( Thread-37) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166
2382013-02-14 10:02:21,257 INFO  [       ome.formats.importer.ImportConfig] ( Thread-37) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013
2392013-02-14 10:02:21,258 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-37) Depth: 4 Metadata Level: MINIMUM
2402013-02-14 10:02:21,258 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
2412013-02-14 10:02:22,618 INFO  [              loci.formats.FormatHandler] ( Thread-37) MIASReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
2422013-02-14 10:02:22,618 INFO  [              loci.formats.FormatHandler] ( Thread-37) Building list of TIFF files
2432013-02-14 10:02:22,833 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating core metadata
2442013-02-14 10:02:22,833 INFO  [              loci.formats.FormatHandler] ( Thread-37) MinimalTiffReader initializing /Volumes/ome/data_repo/from_skyking/mias/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif
2452013-02-14 10:02:22,871 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Reading IFDs
2462013-02-14 10:02:22,872 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-37) Populating metadata
2472013-02-14 10:02:22,873 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating metadata hashtable
2482013-02-14 10:02:22,873 INFO  [              loci.formats.FormatHandler] ( Thread-37) Populating MetadataStore
2492013-02-14 10:02:22,877 WARN  [              loci.formats.FormatHandler] ( Thread-37) Could not determine the plate dimensions.
2502013-02-14 10:02:22,879 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
2512013-02-14 10:02:22,881 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-37) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 1621ms. (1623ms total) [0 unknowns]
2522013-02-14 10:02:22,881 INFO  [       ome.formats.importer.ImportConfig] ( Thread-37) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166
2532013-02-14 10:02:22,881 INFO  [       ome.formats.importer.ImportConfig] ( Thread-37) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013
2542013-02-14 10:02:23,436 INFO  [       ome.formats.importer.ImportConfig] ( Thread-37) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166
2552013-02-14 10:02:23,436 INFO  [       ome.formats.importer.ImportConfig] ( Thread-37) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013
2562013-02-14 10:09:48,587 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
2572013-02-14 10:09:48,992 DEBUG [                  ome.scifio.io.Location] ( Thread-37) Location.mapFile: embedded-stream.raw -> null
2582013-02-14 10:09:49,373 INFO  [       ome.formats.importer.ImportConfig] ( Thread-39) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166
2592013-02-14 10:09:49,373 INFO  [       ome.formats.importer.ImportConfig] ( Thread-39) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013
2602013-02-14 10:09:49,375 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-39) Depth: 4 Metadata Level: MINIMUM
2612013-02-14 10:09:49,665 DEBUG [                  ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null
2622013-02-14 10:09:51,226 INFO  [              loci.formats.FormatHandler] ( Thread-39) MIASReader initializing /Volumes/ome/data_repo/test_images_good/mias/frans/MIAS 3 D set 2 july 13 2009/001/0018/1/001_001_000_000.tif
2632013-02-14 10:09:51,226 INFO  [              loci.formats.FormatHandler] ( Thread-39) Building list of TIFF files
2642013-02-14 10:09:52,175 INFO  [              loci.formats.FormatHandler] ( Thread-39) Populating core metadata
2652013-02-14 10:09:52,175 INFO  [              loci.formats.FormatHandler] ( Thread-39) MinimalTiffReader initializing /Volumes/ome/data_repo/test_images_good/mias/frans/MIAS 3 D set 2 july 13 2009/001/0018/1/001_001_000_000.tif
2662013-02-14 10:09:52,212 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-39) Reading IFDs
2672013-02-14 10:09:52,213 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-39) Populating metadata
2682013-02-14 10:09:52,214 INFO  [              loci.formats.FormatHandler] ( Thread-39) Populating metadata hashtable
2692013-02-14 10:09:52,214 INFO  [              loci.formats.FormatHandler] ( Thread-39) Populating MetadataStore
2702013-02-14 10:09:52,217 WARN  [              loci.formats.FormatHandler] ( Thread-39) Could not determine the plate dimensions.
2712013-02-14 10:09:52,229 DEBUG [                  ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null
2722013-02-14 10:09:52,238 DEBUG [                  ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null
2732013-02-14 10:09:52,475 DEBUG [                  ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null
2742013-02-14 10:09:52,486 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-39) 204 file(s) parsed into 1 group(s) with 2 call(s) to setId in 2801ms. (3112ms total) [1 unknowns]
2752013-02-14 10:09:52,542 INFO  [       ome.formats.importer.ImportConfig] ( Thread-39) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166
2762013-02-14 10:09:52,542 INFO  [       ome.formats.importer.ImportConfig] ( Thread-39) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013
2772013-02-14 10:09:52,544 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-39) Depth: 4 Metadata Level: MINIMUM
2782013-02-14 10:09:52,544 DEBUG [                  ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null
2792013-02-14 10:09:53,415 INFO  [              loci.formats.FormatHandler] ( Thread-39) MIASReader initializing /Volumes/ome/data_repo/test_images_good/mias/frans/MIAS 3 D set 2 july 13 2009/001/0018/1/001_001_000_000.tif
2802013-02-14 10:09:53,415 INFO  [              loci.formats.FormatHandler] ( Thread-39) Building list of TIFF files
2812013-02-14 10:09:53,810 INFO  [              loci.formats.FormatHandler] ( Thread-39) Populating core metadata
2822013-02-14 10:09:53,810 INFO  [              loci.formats.FormatHandler] ( Thread-39) MinimalTiffReader initializing /Volumes/ome/data_repo/test_images_good/mias/frans/MIAS 3 D set 2 july 13 2009/001/0018/1/001_001_000_000.tif
2832013-02-14 10:09:53,842 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-39) Reading IFDs
2842013-02-14 10:09:53,843 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-39) Populating metadata
2852013-02-14 10:09:53,844 INFO  [              loci.formats.FormatHandler] ( Thread-39) Populating metadata hashtable
2862013-02-14 10:09:53,844 INFO  [              loci.formats.FormatHandler] ( Thread-39) Populating MetadataStore
2872013-02-14 10:09:53,846 WARN  [              loci.formats.FormatHandler] ( Thread-39) Could not determine the plate dimensions.
2882013-02-14 10:09:53,858 DEBUG [                  ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null
2892013-02-14 10:09:53,870 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-39) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 1314ms. (1326ms total) [0 unknowns]
2902013-02-14 10:09:53,871 INFO  [       ome.formats.importer.ImportConfig] ( Thread-39) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166
2912013-02-14 10:09:53,871 INFO  [       ome.formats.importer.ImportConfig] ( Thread-39) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013
2922013-02-14 10:09:53,917 INFO  [       ome.formats.importer.ImportConfig] ( Thread-39) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166
2932013-02-14 10:09:53,917 INFO  [       ome.formats.importer.ImportConfig] ( Thread-39) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013
2942013-02-14 10:13:04,872 ERROR [nts.measurement.view.MeasurementViewerUI] (entQueue-0) Problem while handling ROI No ROIShape on coord T: 0 Z: 0
2952013-02-14 10:37:20,909 DEBUG [                  ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null
2962013-02-14 10:41:42,219 ERROR [py.shoola.env.data.OmeroImageServiceImpl] ( Thread-91) Cannot get thumbnail
2972013-02-14 10:41:42,631 ERROR [ola.agents.dataBrowser.TabularDataLoader] (entQueue-0) State: 3Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
298Cannot load the table: -1
299        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
300        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6837)
301        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadTabularData(OmeroMetadataServiceImpl.java:1996)
302        at org.openmicroscopy.shoola.env.data.views.calls.TabularDataLoader$1.doCall(TabularDataLoader.java:74)
303        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
304        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
305        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
306        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
307        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
308        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
309        at java.lang.Thread.run(Thread.java:680)
310Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
311Cannot find annotations for class pojos.PlateData.
312        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
313        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
314        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6804)
315        ... 9 more
316Caused by: Ice.ConnectionLostException
317    error = 0
318        at IceInternal.Outgoing.invoke(Outgoing.java:147)
319        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
320        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
321        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
322        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
323        ... 10 more
324State: 3Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
325Cannot load the table: -1
326        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
327        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6837)
328        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadTabularData(OmeroMetadataServiceImpl.java:1996)
329        at org.openmicroscopy.shoola.env.data.views.calls.TabularDataLoader$1.doCall(TabularDataLoader.java:74)
330        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
331        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
332        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
333        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
334        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
335        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
336        at java.lang.Thread.run(Thread.java:680)
337Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
338Cannot find annotations for class pojos.PlateData.
339        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
340        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
341        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6804)
342        ... 9 more
343Caused by: Ice.ConnectionLostException
344    error = 0
345        at IceInternal.Outgoing.invoke(Outgoing.java:147)
346        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
347        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
348        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
349        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
350        ... 10 more
351Exception in thread "AWT-EventQueue-0"
352
3532013-02-14 10:41:42,652 DEBUG [                  ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null
3542013-02-14 10:41:42,672 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-39) Exception closing "2674311a-8e33-4ce6-a409-a1634a560f1c/86:24:41:e3:-1f6b31aa:13cd7bd7c02:-7567omero.api.RawFileStore" -t:tcp -h 134.36.65.227 -p 45625
355Ice.ConnectionLostException
356    error = 0
357        at IceInternal.Outgoing.invoke(Outgoing.java:147)
358        at omero.api._ServiceFactoryDelM.keepAlive(_ServiceFactoryDelM.java:1526)
359        at omero.api.ServiceFactoryPrxHelper.keepAlive(ServiceFactoryPrxHelper.java:1605)
360        at omero.api.ServiceFactoryPrxHelper.keepAlive(ServiceFactoryPrxHelper.java:1577)
361        at org.openmicroscopy.shoola.env.data.Connector.ping(Connector.java:703)
362        at org.openmicroscopy.shoola.env.data.OMEROGateway.isSessionAlive(OMEROGateway.java:439)
363        at org.openmicroscopy.shoola.env.data.OMEROGateway.getFreeSpace(OMEROGateway.java:4545)
364        at org.openmicroscopy.shoola.env.data.AdminServiceImpl.getQuota(AdminServiceImpl.java:191)
365        at org.openmicroscopy.shoola.env.data.views.calls.AdminLoader$1.doCall(AdminLoader.java:104)
366        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
367        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
368        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
369        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
370        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
371        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
372        at java.lang.Thread.run(Thread.java:680)
3732013-02-14 10:41:42,687 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-39) Exception closing "2674311a-8e33-4ce6-a409-a1634a560f1c/86:24:41:e3:-1f6b31aa:13cd7bd7c02:-7566omero.api.RawPixelsStore" -t:tcp -h 134.36.65.227 -p 45625
374Ice.ConnectionLostException
375    error = 0
376        at IceInternal.Outgoing.invoke(Outgoing.java:147)
377        at omero.api._ServiceFactoryDelM.keepAllAlive(_ServiceFactoryDelM.java:1579)
378        at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:1650)
379        at omero.api.ServiceFactoryPrxHelper.keepAllAlive(ServiceFactoryPrxHelper.java:1622)
380        at org.openmicroscopy.shoola.env.data.Connector.keepSessionAlive(Connector.java:710)
381        at org.openmicroscopy.shoola.env.data.OMEROGateway.keepSessionAlive(OMEROGateway.java:5578)
382        at org.openmicroscopy.shoola.env.data.KeepClientAlive.run(KeepClientAlive.java:63)
383        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
384        at java.util.concurrent.FutureTask$Sync.innerRunAndReset(FutureTask.java:317)
385        at java.util.concurrent.FutureTask.runAndReset(FutureTask.java:150)
386        at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$101(ScheduledThreadPoolExecutor.java:98)
387        at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.runPeriodic(ScheduledThreadPoolExecutor.java:180)
388        at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:204)
389        at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
390        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
391        at java.lang.Thread.run(Thread.java:680)
3922013-02-14 10:41:42,700 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-39) Exception closing "2674311a-8e33-4ce6-a409-a1634a560f1c/86:24:41:e3:-1f6b31aa:13cd7bd7c02:-7565omero.api.ThumbnailStore" -t:tcp -h 134.36.65.227 -p 45625
393Ice.ConnectionLostException
394    error = 0
395        at IceInternal.Outgoing.invoke(Outgoing.java:147)
396        at omero.api._ServiceFactoryDelM.keepAlive(_ServiceFactoryDelM.java:1526)
397        at omero.api.ServiceFactoryPrxHelper.keepAlive(ServiceFactoryPrxHelper.java:1605)
398        at omero.api.ServiceFactoryPrxHelper.keepAlive(ServiceFactoryPrxHelper.java:1577)
399        at org.openmicroscopy.shoola.env.data.Connector.ping(Connector.java:703)
400        at org.openmicroscopy.shoola.env.data.OMEROGateway.isSessionAlive(OMEROGateway.java:439)
401        at org.openmicroscopy.shoola.env.data.OMEROGateway.getFreeSpace(OMEROGateway.java:4545)
402        at org.openmicroscopy.shoola.env.data.AdminServiceImpl.getQuota(AdminServiceImpl.java:191)
403        at org.openmicroscopy.shoola.env.data.views.calls.AdminLoader$1.doCall(AdminLoader.java:104)
404        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
405        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
406        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
407        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
408        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
409        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
410        at java.lang.Thread.run(Thread.java:680)
4112013-02-14 10:41:42,712 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-39) Exception closing 2674311a-8e33-4ce6-a409-a1634a560f1c/49dc7284-19d6-4d20-b94f-a000d55ce56eomero.api.MetadataStore -t:tcp -h 134.36.65.227 -p 45625
412Ice.ConnectionLostException
413    error = 0
414        at IceInternal.Outgoing.invoke(Outgoing.java:147)
415        at omero.api._ServiceFactoryDelM.keepAlive(_ServiceFactoryDelM.java:1526)
416        at omero.api.ServiceFactoryPrxHelper.keepAlive(ServiceFactoryPrxHelper.java:1605)
417        at omero.api.ServiceFactoryPrxHelper.keepAlive(ServiceFactoryPrxHelper.java:1577)
418        at org.openmicroscopy.shoola.env.data.Connector.ping(Connector.java:703)
419        at org.openmicroscopy.shoola.env.data.OMEROGateway.isSessionAlive(OMEROGateway.java:439)
420        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2727)
421        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
422        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
423        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
424        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
425        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
426        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
427        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
428        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
429        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
430        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
431        at java.lang.Thread.run(Thread.java:680)
4322013-02-14 10:41:42,714 DEBUG [                  ome.scifio.io.Location] ( Thread-39) Location.mapFile: embedded-stream.raw -> null
4332013-02-14 10:41:42,744 WARN  [ents.fsimporter.util.FileImportComponent] ( Thread-39) Error during import: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
434Cannot find images for class pojos.ImageData.
435        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
436        at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2836)
437        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6654)
438        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595)
439        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:205)
440        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1338)
441        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
442        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
443        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
444        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
445        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
446        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
447        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
448        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
449        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
450        at java.lang.Thread.run(Thread.java:680)
451Caused by: Ice.ConnectionLostException
452    error = 0
453        at IceInternal.Outgoing.invoke(Outgoing.java:147)
454        at omero.api._IContainerDelM.getImages(_IContainerDelM.java:362)
455        at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:466)
456        at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:438)
457        at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2833)
458        ... 14 more
459
460        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6665)
461        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595)
462        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:205)
463        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1338)
464        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
465        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
466        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
467        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
468        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
469        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
470        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
471        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
472        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
473        at java.lang.Thread.run(Thread.java:680)
474Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
475Cannot find images for class pojos.ImageData.
476        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
477        at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2836)
478        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6654)
479        ... 13 more
480Caused by: Ice.ConnectionLostException
481    error = 0
482        at IceInternal.Outgoing.invoke(Outgoing.java:147)
483        at omero.api._IContainerDelM.getImages(_IContainerDelM.java:362)
484        at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:466)
485        at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:438)
486        at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2833)
487        ... 14 more
488Error during import: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
489Cannot find images for class pojos.ImageData.
490        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
491        at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2836)
492        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6654)
493        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595)
494        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:205)
495        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1338)
496        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
497        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
498        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
499        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
500        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
501        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
502        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
503        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
504        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
505        at java.lang.Thread.run(Thread.java:680)
506Caused by: Ice.ConnectionLostException
507    error = 0
508        at IceInternal.Outgoing.invoke(Outgoing.java:147)
509        at omero.api._IContainerDelM.getImages(_IContainerDelM.java:362)
510        at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:466)
511        at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:438)
512        at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2833)
513        ... 14 more
514
515        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6665)
516        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595)
517        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:205)
518        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1338)
519        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
520        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
521        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
522        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
523        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
524        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
525        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
526        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
527        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
528        at java.lang.Thread.run(Thread.java:680)
529Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
530Cannot find images for class pojos.ImageData.
531        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
532        at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2836)
533        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6654)
534        ... 13 more
535Caused by: Ice.ConnectionLostException
536    error = 0
537        at IceInternal.Outgoing.invoke(Outgoing.java:147)
538        at omero.api._IContainerDelM.getImages(_IContainerDelM.java:362)
539        at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:466)
540        at omero.api.IContainerPrxHelper.getImages(IContainerPrxHelper.java:438)
541        at org.openmicroscopy.shoola.env.data.OMEROGateway.getContainerImages(OMEROGateway.java:2833)
542        ... 14 more
543Exception in thread "Thread-39"
544
5452013-02-14 10:41:42,770 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
546Cannot find annotations for class pojos.ImageData.
547        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
548        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
549        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
550        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
551        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
552        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
553        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
554        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
555        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
556        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
557        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
558        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
559        at java.lang.Thread.run(Thread.java:680)
560Caused by: Ice.ConnectionLostException
561    error = 0
562        at IceInternal.Outgoing.invoke(Outgoing.java:147)
563        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
564        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
565        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
566        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
567        ... 11 more
568State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
569Cannot find annotations for class pojos.ImageData.
570        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
571        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
572        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
573        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
574        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
575        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
576        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
577        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
578        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
579        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
580        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
581        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
582        at java.lang.Thread.run(Thread.java:680)
583Caused by: Ice.ConnectionLostException
584    error = 0
585        at IceInternal.Outgoing.invoke(Outgoing.java:147)
586        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
587        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
588        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
589        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
590        ... 11 more
591Exception in thread "AWT-EventQueue-0"
592
5932013-02-14 10:41:42,821 ERROR [a.agents.metadata.RenderingControlLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
594Cannot access the Rendering Engine for 831
595        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
596        at org.openmicroscopy.shoola.env.data.OMEROGateway.getRenderingService(OMEROGateway.java:1766)
597        at org.openmicroscopy.shoola.env.data.OMEROGateway.generateRenderingEngine(OMEROGateway.java:3372)
598        at org.openmicroscopy.shoola.env.data.OMEROGateway.createRenderingEngine(OMEROGateway.java:3353)
599        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:576)
600        at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97)
601        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
602        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
603        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
604        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
605        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
606        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
607        at java.lang.Thread.run(Thread.java:680)
608Caused by: Ice.ConnectionLostException
609    error = 0
610        at IceInternal.Outgoing.invoke(Outgoing.java:147)
611        at omero.api._ServiceFactoryDelM.createRenderingEngine(_ServiceFactoryDelM.java:456)
612        at omero.api.ServiceFactoryPrxHelper.createRenderingEngine(ServiceFactoryPrxHelper.java:524)
613        at omero.api.ServiceFactoryPrxHelper.createRenderingEngine(ServiceFactoryPrxHelper.java:496)
614        at org.openmicroscopy.shoola.env.data.Connector.getRenderingService(Connector.java:499)
615        at org.openmicroscopy.shoola.env.data.OMEROGateway.getRenderingService(OMEROGateway.java:1763)
616        ... 11 more
617Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
618Cannot access the Rendering Engine for 831
619        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
620        at org.openmicroscopy.shoola.env.data.OMEROGateway.getRenderingService(OMEROGateway.java:1766)
621        at org.openmicroscopy.shoola.env.data.OMEROGateway.generateRenderingEngine(OMEROGateway.java:3372)
622        at org.openmicroscopy.shoola.env.data.OMEROGateway.createRenderingEngine(OMEROGateway.java:3353)
623        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:576)
624        at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97)
625        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
626        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
627        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
628        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
629        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
630        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
631        at java.lang.Thread.run(Thread.java:680)
632Caused by: Ice.ConnectionLostException
633    error = 0
634        at IceInternal.Outgoing.invoke(Outgoing.java:147)
635        at omero.api._ServiceFactoryDelM.createRenderingEngine(_ServiceFactoryDelM.java:456)
636        at omero.api.ServiceFactoryPrxHelper.createRenderingEngine(ServiceFactoryPrxHelper.java:524)
637        at omero.api.ServiceFactoryPrxHelper.createRenderingEngine(ServiceFactoryPrxHelper.java:496)
638        at org.openmicroscopy.shoola.env.data.Connector.getRenderingService(Connector.java:499)
639        at org.openmicroscopy.shoola.env.data.OMEROGateway.getRenderingService(OMEROGateway.java:1763)
640        ... 11 more
641Exception in thread "AWT-EventQueue-0"
642
6432013-02-14 10:41:42,841 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
644Cannot start the Raw pixels store.
645        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
646        at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8232)
647        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1926)
648        at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100)
649        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
650        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
651        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
652        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
653        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
654        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
655        at java.lang.Thread.run(Thread.java:680)
656Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
657Cannot access the RawPixelsStore service.
658        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
659        at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1797)
660        at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8226)
661        ... 9 more
662Caused by: Ice.ConnectionLostException
663    error = 0
664        at IceInternal.Outgoing.invoke(Outgoing.java:147)
665        at omero.api._ServiceFactoryDelM.createRawPixelsStore(_ServiceFactoryDelM.java:412)
666        at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:479)
667        at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:451)
668        at org.openmicroscopy.shoola.env.data.Connector.getPixelsStore(Connector.java:516)
669        at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1794)
670        ... 10 more
671Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
672Cannot start the Raw pixels store.
673        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
674        at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8232)
675        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1926)
676        at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100)
677        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
678        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
679        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
680        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
681        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
682        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
683        at java.lang.Thread.run(Thread.java:680)
684Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
685Cannot access the RawPixelsStore service.
686        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
687        at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1797)
688        at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8226)
689        ... 9 more
690Caused by: Ice.ConnectionLostException
691    error = 0
692        at IceInternal.Outgoing.invoke(Outgoing.java:147)
693        at omero.api._ServiceFactoryDelM.createRawPixelsStore(_ServiceFactoryDelM.java:412)
694        at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:479)
695        at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:451)
696        at org.openmicroscopy.shoola.env.data.Connector.getPixelsStore(Connector.java:516)
697        at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1794)
698        ... 10 more
699Exception in thread "AWT-EventQueue-0"
700
7012013-02-14 10:41:42,869 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
702Cannot find annotations for class pojos.ImageData.
703        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
704        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
705        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
706        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
707        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
708        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
709        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
710        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
711        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
712        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
713        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
714        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
715        at java.lang.Thread.run(Thread.java:680)
716Caused by: Ice.ConnectionLostException
717    error = 0
718        at IceInternal.Outgoing.invoke(Outgoing.java:147)
719        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
720        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
721        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
722        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
723        ... 11 more
724State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
725Cannot find annotations for class pojos.ImageData.
726        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
727        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
728        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
729        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
730        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
731        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
732        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
733        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
734        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
735        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
736        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
737        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
738        at java.lang.Thread.run(Thread.java:680)
739Caused by: Ice.ConnectionLostException
740    error = 0
741        at IceInternal.Outgoing.invoke(Outgoing.java:147)
742        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
743        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
744        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
745        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
746        ... 11 more
747Exception in thread "AWT-EventQueue-0"
748
7492013-02-14 10:41:42,879 INFO  [       ome.formats.importer.ImportConfig] (Thread-106) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166
7502013-02-14 10:41:42,880 INFO  [       ome.formats.importer.ImportConfig] (Thread-106) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013
7512013-02-14 10:41:42,913 INFO  [   ome.formats.importer.ImportCandidates] (Thread-106) Depth: 4 Metadata Level: MINIMUM
7522013-02-14 10:41:42,915 DEBUG [                  ome.scifio.io.Location] (Thread-106) Location.mapFile: embedded-stream.raw -> null
7532013-02-14 10:41:42,951 ERROR [y.shoola.agents.metadata.ImageSizeLoader] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
754Cannot start the Raw pixels store.
755        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
756        at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8232)
757        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1926)
758        at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100)
759        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
760        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
761        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
762        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
763        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
764        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
765        at java.lang.Thread.run(Thread.java:680)
766Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
767Cannot access the RawPixelsStore service.
768        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
769        at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1797)
770        at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8226)
771        ... 9 more
772Caused by: Ice.ConnectionLostException
773    error = 0
774        at IceInternal.Outgoing.invoke(Outgoing.java:147)
775        at omero.api._ServiceFactoryDelM.createRawPixelsStore(_ServiceFactoryDelM.java:412)
776        at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:479)
777        at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:451)
778        at org.openmicroscopy.shoola.env.data.Connector.getPixelsStore(Connector.java:516)
779        at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1794)
780        ... 10 more
781Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
782Cannot start the Raw pixels store.
783        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
784        at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8232)
785        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.isLargeImage(OmeroImageServiceImpl.java:1926)
786        at org.openmicroscopy.shoola.env.data.views.calls.PixelsDataLoader$2.doCall(PixelsDataLoader.java:100)
787        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
788        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
789        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
790        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
791        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
792        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
793        at java.lang.Thread.run(Thread.java:680)
794Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
795Cannot access the RawPixelsStore service.
796        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
797        at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1797)
798        at org.openmicroscopy.shoola.env.data.OMEROGateway.isLargeImage(OMEROGateway.java:8226)
799        ... 9 more
800Caused by: Ice.ConnectionLostException
801    error = 0
802        at IceInternal.Outgoing.invoke(Outgoing.java:147)
803        at omero.api._ServiceFactoryDelM.createRawPixelsStore(_ServiceFactoryDelM.java:412)
804        at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:479)
805        at omero.api.ServiceFactoryPrxHelper.createRawPixelsStore(ServiceFactoryPrxHelper.java:451)
806        at org.openmicroscopy.shoola.env.data.Connector.getPixelsStore(Connector.java:516)
807        at org.openmicroscopy.shoola.env.data.OMEROGateway.getPixelsStore(OMEROGateway.java:1794)
808        ... 10 more
809Exception in thread "AWT-EventQueue-0"
810
8112013-02-14 10:41:42,981 ERROR [ola.agents.dataBrowser.TabularDataLoader] (entQueue-0) State: 3Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
812Cannot load the table: -1
813        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
814        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6837)
815        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadTabularData(OmeroMetadataServiceImpl.java:1996)
816        at org.openmicroscopy.shoola.env.data.views.calls.TabularDataLoader$1.doCall(TabularDataLoader.java:74)
817        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
818        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
819        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
820        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
821        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
822        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
823        at java.lang.Thread.run(Thread.java:680)
824Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
825Cannot find annotations for class pojos.ScreenData.
826        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
827        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
828        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6804)
829        ... 9 more
830Caused by: Ice.ConnectionLostException
831    error = 0
832        at IceInternal.Outgoing.invoke(Outgoing.java:147)
833        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
834        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
835        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
836        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
837        ... 10 more
838State: 3Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
839Cannot load the table: -1
840        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
841        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6837)
842        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadTabularData(OmeroMetadataServiceImpl.java:1996)
843        at org.openmicroscopy.shoola.env.data.views.calls.TabularDataLoader$1.doCall(TabularDataLoader.java:74)
844        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
845        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
846        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
847        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
848        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
849        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
850        at java.lang.Thread.run(Thread.java:680)
851Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
852Cannot find annotations for class pojos.ScreenData.
853        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
854        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
855        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadTabularData(OMEROGateway.java:6804)
856        ... 9 more
857Caused by: Ice.ConnectionLostException
858    error = 0
859        at IceInternal.Outgoing.invoke(Outgoing.java:147)
860        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
861        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
862        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
863        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
864        ... 10 more
865Exception in thread "AWT-EventQueue-0"
866
8672013-02-14 10:41:44,806 DEBUG [                       ome.xml.model.OME] (Thread-106) Expecting node name of OME got scn
8682013-02-14 10:41:45,591 INFO  [              loci.formats.FormatHandler] (Thread-106) LeicaSCNReader initializing /Volumes/ome/data_repo/test_images_good/leica-scn/mihaela/UCLAD_0000000280_2011-02-10 13_32_55Z.scn
8692013-02-14 10:41:45,636 INFO  [       loci.formats.in.MinimalTiffReader] (Thread-106) Reading IFDs
8702013-02-14 10:41:45,990 INFO  [       loci.formats.in.MinimalTiffReader] (Thread-106) Populating metadata
8712013-02-14 10:41:46,023 INFO  [          loci.formats.in.BaseTiffReader] (Thread-106) Populating OME metadata
8722013-02-14 10:41:46,025 DEBUG [                  ome.scifio.io.Location] (Thread-106) Location.mapFile: embedded-stream.raw -> null
8732013-02-14 10:41:46,027 INFO  [   ome.formats.importer.ImportCandidates] (Thread-106) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 3110ms. (3114ms total) [0 unknowns]
8742013-02-14 10:41:46,027 INFO  [       ome.formats.importer.ImportConfig] (Thread-106) OMERO Version: 4.4.4-1274-b3d767a-dirty-ice33-b166
8752013-02-14 10:41:46,028 INFO  [       ome.formats.importer.ImportConfig] (Thread-106) Bioformats version: 4.5-DEV revision: 6ed780b date: 14 February 2013
8762013-02-14 10:41:46,047 WARN  [ents.fsimporter.util.FileImportComponent] (entQueue-0) Error during import: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
877Cannot access Import service.
878        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
879        at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1346)
880        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6608)
881        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595)
882        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1259)
883        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
884        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
885        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
886        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
887        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
888        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
889        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
890        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
891        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
892        at java.lang.Thread.run(Thread.java:680)
893Caused by: Ice.ConnectionLostException
894    error = 0
895        at IceInternal.Outgoing.invoke(Outgoing.java:147)
896        at omero.api._ServiceFactoryDelM.getAdminService(_ServiceFactoryDelM.java:627)
897        at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:705)
898        at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:677)
899        at ome.formats.OMEROMetadataStoreClient.initializeServices(OMEROMetadataStoreClient.java:400)
900        at ome.formats.OMEROMetadataStoreClient.initialize(OMEROMetadataStoreClient.java:486)
901        at org.openmicroscopy.shoola.env.data.Connector.getImportStore(Connector.java:255)
902        at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1343)
903        ... 13 more
904
905        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6665)
906        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595)
907        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1259)
908        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
909        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
910        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
911        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
912        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
913        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
914        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
915        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
916        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
917        at java.lang.Thread.run(Thread.java:680)
918Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
919Cannot access Import service.
920        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
921        at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1346)
922        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6608)
923        ... 12 more
924Caused by: Ice.ConnectionLostException
925    error = 0
926        at IceInternal.Outgoing.invoke(Outgoing.java:147)
927        at omero.api._ServiceFactoryDelM.getAdminService(_ServiceFactoryDelM.java:627)
928        at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:705)
929        at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:677)
930        at ome.formats.OMEROMetadataStoreClient.initializeServices(OMEROMetadataStoreClient.java:400)
931        at ome.formats.OMEROMetadataStoreClient.initialize(OMEROMetadataStoreClient.java:486)
932        at org.openmicroscopy.shoola.env.data.Connector.getImportStore(Connector.java:255)
933        at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1343)
934        ... 13 more
935Error during import: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
936Cannot access Import service.
937        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
938        at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1346)
939        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6608)
940        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595)
941        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1259)
942        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
943        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
944        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
945        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
946        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
947        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
948        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
949        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
950        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
951        at java.lang.Thread.run(Thread.java:680)
952Caused by: Ice.ConnectionLostException
953    error = 0
954        at IceInternal.Outgoing.invoke(Outgoing.java:147)
955        at omero.api._ServiceFactoryDelM.getAdminService(_ServiceFactoryDelM.java:627)
956        at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:705)
957        at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:677)
958        at ome.formats.OMEROMetadataStoreClient.initializeServices(OMEROMetadataStoreClient.java:400)
959        at ome.formats.OMEROMetadataStoreClient.initialize(OMEROMetadataStoreClient.java:486)
960        at org.openmicroscopy.shoola.env.data.Connector.getImportStore(Connector.java:255)
961        at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1343)
962        ... 13 more
963
964        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6665)
965        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6595)
966        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1259)
967        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
968        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
969        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110)
970        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
971        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
972        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
973        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
974        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
975        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
976        at java.lang.Thread.run(Thread.java:680)
977Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
978Cannot access Import service.
979        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
980        at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1346)
981        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6608)
982        ... 12 more
983Caused by: Ice.ConnectionLostException
984    error = 0
985        at IceInternal.Outgoing.invoke(Outgoing.java:147)
986        at omero.api._ServiceFactoryDelM.getAdminService(_ServiceFactoryDelM.java:627)
987        at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:705)
988        at omero.api.ServiceFactoryPrxHelper.getAdminService(ServiceFactoryPrxHelper.java:677)
989        at ome.formats.OMEROMetadataStoreClient.initializeServices(OMEROMetadataStoreClient.java:400)
990        at ome.formats.OMEROMetadataStoreClient.initialize(OMEROMetadataStoreClient.java:486)
991        at org.openmicroscopy.shoola.env.data.Connector.getImportStore(Connector.java:255)
992        at org.openmicroscopy.shoola.env.data.OMEROGateway.getImportStore(OMEROGateway.java:1343)
993        ... 13 more
994Exception in thread "AWT-EventQueue-0"
995
9962013-02-14 10:59:06,601 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
997Cannot find annotations for class pojos.PlateData.
998        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
999        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
1000        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
1001        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
1002        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
1003        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
1004        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1005        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1006        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1007        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1008        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1009        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1010        at java.lang.Thread.run(Thread.java:680)
1011Caused by: Ice.ConnectionLostException
1012    error = 0
1013        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1014        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
1015        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
1016        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
1017        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
1018        ... 11 more
1019State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1020Cannot find annotations for class pojos.PlateData.
1021        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1022        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
1023        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
1024        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
1025        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
1026        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
1027        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1028        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1029        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1030        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1031        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1032        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1033        at java.lang.Thread.run(Thread.java:680)
1034Caused by: Ice.ConnectionLostException
1035    error = 0
1036        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1037        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
1038        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
1039        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
1040        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
1041        ... 11 more
1042Exception in thread "AWT-EventQueue-0"
1043
10442013-02-14 10:59:29,213 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1045Cannot find annotations for class pojos.PlateAcquisitionData.
1046        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1047        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
1048        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
1049        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
1050        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
1051        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
1052        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1053        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1054        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1055        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1056        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1057        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1058        at java.lang.Thread.run(Thread.java:680)
1059Caused by: Ice.ConnectionLostException
1060    error = 0
1061        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1062        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
1063        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
1064        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
1065        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
1066        ... 11 more
1067State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1068Cannot find annotations for class pojos.PlateAcquisitionData.
1069        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1070        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
1071        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
1072        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
1073        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
1074        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
1075        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1076        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1077        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1078        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1079        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1080        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1081        at java.lang.Thread.run(Thread.java:680)
1082Caused by: Ice.ConnectionLostException
1083    error = 0
1084        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1085        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
1086        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
1087        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
1088        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
1089        ... 11 more
1090Exception in thread "AWT-EventQueue-0"
1091
10922013-02-14 10:59:39,296 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1093Cannot find annotations for class pojos.PlateData.
1094        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1095        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
1096        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
1097        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
1098        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
1099        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
1100        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1101        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1102        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1103        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1104        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1105        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1106        at java.lang.Thread.run(Thread.java:680)
1107Caused by: Ice.ConnectionLostException
1108    error = 0
1109        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1110        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
1111        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
1112        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
1113        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
1114        ... 11 more
1115State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1116Cannot find annotations for class pojos.PlateData.
1117        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1118        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
1119        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
1120        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
1121        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
1122        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
1123        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1124        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1125        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1126        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1127        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1128        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1129        at java.lang.Thread.run(Thread.java:680)
1130Caused by: Ice.ConnectionLostException
1131    error = 0
1132        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1133        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
1134        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
1135        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
1136        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
1137        ... 11 more
1138Exception in thread "AWT-EventQueue-0"
1139
11402013-02-14 11:08:08,744 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1141Cannot find annotations for class pojos.PlateData.
1142        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1143        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
1144        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
1145        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
1146        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
1147        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
1148        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1149        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1150        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1151        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1152        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1153        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1154        at java.lang.Thread.run(Thread.java:680)
1155Caused by: Ice.ConnectionLostException
1156    error = 0
1157        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1158        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
1159        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
1160        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
1161        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
1162        ... 11 more
1163State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1164Cannot find annotations for class pojos.PlateData.
1165        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1166        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
1167        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
1168        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
1169        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
1170        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
1171        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1172        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1173        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1174        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1175        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1176        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1177        at java.lang.Thread.run(Thread.java:680)
1178Caused by: Ice.ConnectionLostException
1179    error = 0
1180        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1181        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
1182        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
1183        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
1184        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
1185        ... 11 more
1186Exception in thread "AWT-EventQueue-0"
1187
11882013-02-14 11:13:06,072 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1189Cannot find annotations for class pojos.PlateData.
1190        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1191        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
1192        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
1193        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
1194        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
1195        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
1196        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1197        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1198        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1199        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1200        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1201        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1202        at java.lang.Thread.run(Thread.java:680)
1203Caused by: Ice.ConnectionLostException
1204    error = 0
1205        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1206        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
1207        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
1208        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
1209        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
1210        ... 11 more
1211State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1212Cannot find annotations for class pojos.PlateData.
1213        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1214        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
1215        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
1216        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
1217        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
1218        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
1219        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1220        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1221        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1222        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1223        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1224        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1225        at java.lang.Thread.run(Thread.java:680)
1226Caused by: Ice.ConnectionLostException
1227    error = 0
1228        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1229        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
1230        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
1231        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
1232        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
1233        ... 11 more
1234Exception in thread "AWT-EventQueue-0"
1235
12362013-02-14 11:19:40,326 ERROR [treeviewer.RefreshExperimenterDataLoader] (entQueue-0) State: 11Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1237Cannot load hierarchy for class pojos.ProjectData.
1238        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1239        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2649)
1240        at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.loadContainerHierarchy(OmeroDataServiceImpl.java:221)
1241        at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.retrieveData(DMRefreshLoader.java:122)
1242        at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.access$100(DMRefreshLoader.java:73)
1243        at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader$1.doCall(DMRefreshLoader.java:215)
1244        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1245        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1246        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1247        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1248        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1249        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1250        at java.lang.Thread.run(Thread.java:680)
1251Caused by: Ice.ConnectionLostException
1252    error = 0
1253        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1254        at omero.api._IContainerDelM.loadContainerHierarchy(_IContainerDelM.java:585)
1255        at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:738)
1256        at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:710)
1257        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2645)
1258        ... 11 more
1259State: 11Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1260Cannot load hierarchy for class pojos.ProjectData.
1261        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1262        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2649)
1263        at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.loadContainerHierarchy(OmeroDataServiceImpl.java:221)
1264        at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.retrieveData(DMRefreshLoader.java:122)
1265        at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.access$100(DMRefreshLoader.java:73)
1266        at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader$1.doCall(DMRefreshLoader.java:215)
1267        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1268        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1269        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1270        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1271        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1272        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1273        at java.lang.Thread.run(Thread.java:680)
1274Caused by: Ice.ConnectionLostException
1275    error = 0
1276        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1277        at omero.api._IContainerDelM.loadContainerHierarchy(_IContainerDelM.java:585)
1278        at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:738)
1279        at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:710)
1280        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2645)
1281        ... 11 more
1282Exception in thread "AWT-EventQueue-0"
1283
12842013-02-14 11:19:49,367 ERROR [ola.agents.metadata.StructuredDataLoader] (entQueue-0) State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1285Cannot find annotations for class pojos.GroupData.
1286        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1287        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
1288        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
1289        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
1290        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
1291        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
1292        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1293        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1294        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1295        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1296        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1297        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1298        at java.lang.Thread.run(Thread.java:680)
1299Caused by: Ice.ConnectionLostException
1300    error = 0
1301        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1302        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
1303        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
1304        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
1305        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
1306        ... 11 more
1307State: 2Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1308Cannot find annotations for class pojos.GroupData.
1309        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1310        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2745)
1311        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredAnnotations(OmeroMetadataServiceImpl.java:1046)
1312        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:731)
1313        at org.openmicroscopy.shoola.env.data.OmeroMetadataServiceImpl.loadStructuredData(OmeroMetadataServiceImpl.java:835)
1314        at org.openmicroscopy.shoola.env.data.views.calls.StructuredAnnotationLoader$6.doCall(StructuredAnnotationLoader.java:211)
1315        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1316        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1317        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1318        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1319        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1320        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1321        at java.lang.Thread.run(Thread.java:680)
1322Caused by: Ice.ConnectionLostException
1323    error = 0
1324        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1325        at omero.api._IMetadataDelM.loadAnnotations(_IMetadataDelM.java:260)
1326        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:320)
1327        at omero.api.IMetadataPrxHelper.loadAnnotations(IMetadataPrxHelper.java:292)
1328        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadAnnotations(OMEROGateway.java:2741)
1329        ... 11 more
1330Exception in thread "AWT-EventQueue-0"
1331
13322013-02-14 11:19:57,819 ERROR [treeviewer.RefreshExperimenterDataLoader] (entQueue-0) State: 11Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1333Cannot load hierarchy for class pojos.ProjectData.
1334        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1335        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2649)
1336        at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.loadContainerHierarchy(OmeroDataServiceImpl.java:221)
1337        at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.retrieveData(DMRefreshLoader.java:122)
1338        at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.access$100(DMRefreshLoader.java:73)
1339        at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader$1.doCall(DMRefreshLoader.java:215)
1340        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1341        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1342        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1343        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1344        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1345        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1346        at java.lang.Thread.run(Thread.java:680)
1347Caused by: Ice.ConnectionLostException
1348    error = 0
1349        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1350        at omero.api._IContainerDelM.loadContainerHierarchy(_IContainerDelM.java:585)
1351        at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:738)
1352        at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:710)
1353        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2645)
1354        ... 11 more
1355State: 11Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data.
1356Cannot load hierarchy for class pojos.ProjectData.
1357        at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:891)
1358        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2649)
1359        at org.openmicroscopy.shoola.env.data.OmeroDataServiceImpl.loadContainerHierarchy(OmeroDataServiceImpl.java:221)
1360        at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.retrieveData(DMRefreshLoader.java:122)
1361        at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader.access$100(DMRefreshLoader.java:73)
1362        at org.openmicroscopy.shoola.env.data.views.calls.DMRefreshLoader$1.doCall(DMRefreshLoader.java:215)
1363        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1364        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1365        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1366        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1367        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
1368        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1369        at java.lang.Thread.run(Thread.java:680)
1370Caused by: Ice.ConnectionLostException
1371    error = 0
1372        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1373        at omero.api._IContainerDelM.loadContainerHierarchy(_IContainerDelM.java:585)
1374        at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:738)
1375        at omero.api.IContainerPrxHelper.loadContainerHierarchy(IContainerPrxHelper.java:710)
1376        at org.openmicroscopy.shoola.env.data.OMEROGateway.loadContainerHierarchy(OMEROGateway.java:2645)
1377        ... 11 more
1378Exception in thread "AWT-EventQueue-0"
1379

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