Ticket #11547: Insight log.txt

File Insight log.txt, 35.6 KB (added by pwalczysko, 6 years ago)
Line 
12013-10-17 10:03:57,286 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (nitializer) Network status: true (in 2 ms.)
22013-10-17 10:03:57,428 INFO  [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: gretzky.openmicroscopy.org.uk
3User Name: user-6 -- Password: ***
4
52013-10-17 10:03:58,741 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-15) Cached networkup: true
62013-10-17 10:03:58,872 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-16) Cached networkup: true
72013-10-17 10:04:14,918 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-17) Network status: true (in 0 ms.)
82013-10-17 10:04:14,925 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-18) Cached networkup: true
92013-10-17 10:04:15,029 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-19) Cached networkup: true
102013-10-17 10:05:03,174 DEBUG [                  ome.scifio.io.Location] (entQueue-0) Location.mapFile: embedded-stream.raw -> null
112013-10-17 10:05:03,175 DEBUG [                  ome.scifio.io.Location] (entQueue-0) Location.mapFile: embedded-stream.raw -> null
122013-10-17 10:05:03,214 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
132013-10-17 10:05:03,214 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
142013-10-17 10:05:03,228 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM
152013-10-17 10:05:03,244 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
162013-10-17 10:05:03,253 DEBUG [     ome.scifio.io.NIOByteBufferProvider] ( Thread-20) Using mapped byte buffer? false
172013-10-17 10:05:03,301 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/IAGFP-Noc01_R3D.dv.log
182013-10-17 10:05:03,356 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
192013-10-17 10:05:03,360 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
202013-10-17 10:05:03,360 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
212013-10-17 10:05:03,362 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
222013-10-17 10:05:03,363 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
232013-10-17 10:05:03,447 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
242013-10-17 10:05:03,449 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
252013-10-17 10:05:03,478 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/lung-lentiCMtriple-4_R3D.dv
262013-10-17 10:05:03,485 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
272013-10-17 10:05:03,485 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
282013-10-17 10:05:03,485 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
292013-10-17 10:05:03,486 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
302013-10-17 10:05:03,486 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
312013-10-17 10:05:03,487 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
322013-10-17 10:05:03,489 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
332013-10-17 10:05:03,748 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/mt1_R3D_D3D.dv
342013-10-17 10:05:03,781 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
352013-10-17 10:05:03,781 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
362013-10-17 10:05:03,781 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
372013-10-17 10:05:03,781 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
382013-10-17 10:05:03,781 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
392013-10-17 10:05:03,782 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
402013-10-17 10:05:03,785 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
412013-10-17 10:05:03,814 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/very_small.d3d.dv
422013-10-17 10:05:03,821 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
432013-10-17 10:05:03,822 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
442013-10-17 10:05:03,822 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
452013-10-17 10:05:03,822 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
462013-10-17 10:05:03,823 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
472013-10-17 10:05:03,824 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
482013-10-17 10:05:03,826 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
492013-10-17 10:05:04,083 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/test11_R3D.dv
502013-10-17 10:05:04,121 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
512013-10-17 10:05:04,121 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
522013-10-17 10:05:04,121 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
532013-10-17 10:05:04,129 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
542013-10-17 10:05:04,133 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
552013-10-17 10:05:04,136 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
562013-10-17 10:05:04,139 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
572013-10-17 10:05:04,400 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/CFPNEAT01_R3D.dv
582013-10-17 10:05:04,432 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
592013-10-17 10:05:04,432 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
602013-10-17 10:05:04,432 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
612013-10-17 10:05:04,433 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
622013-10-17 10:05:04,434 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
632013-10-17 10:05:04,435 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
642013-10-17 10:05:04,438 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
652013-10-17 10:05:04,695 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/SMN10ul03_R3D_D3D.dv
662013-10-17 10:05:04,726 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
672013-10-17 10:05:04,726 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
682013-10-17 10:05:04,726 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
692013-10-17 10:05:04,727 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
702013-10-17 10:05:04,728 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
712013-10-17 10:05:04,729 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
722013-10-17 10:05:04,731 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
732013-10-17 10:05:04,980 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/off_by_1_a.dv
742013-10-17 10:05:05,016 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
752013-10-17 10:05:05,016 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
762013-10-17 10:05:05,016 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
772013-10-17 10:05:05,016 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
782013-10-17 10:05:05,016 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
792013-10-17 10:05:05,017 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
802013-10-17 10:05:05,019 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
812013-10-17 10:05:05,271 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
822013-10-17 10:05:05,274 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
832013-10-17 10:05:05,778 INFO  [                loci.formats.ImageReader] ( Thread-20) OMETiffReader initializing /Volumes/ome/data_repo/test_images_good/dv/very_small.d3d.dv.ome.tif
842013-10-17 10:05:05,868 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-20) Reading IFDs
852013-10-17 10:05:05,876 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-20) Populating metadata
862013-10-17 10:05:05,882 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
872013-10-17 10:05:05,886 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
882013-10-17 10:05:06,079 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
892013-10-17 10:05:06,081 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) 20 file(s) parsed into 9 group(s) with 11 call(s) to setId in 2803ms. (2853ms total) [2 unknowns]
902013-10-17 10:05:06,081 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
912013-10-17 10:05:06,124 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Network status: true (in 0 ms.)
922013-10-17 10:05:06,309 DEBUG [openmicroscopy.shoola.env.data.Connector] ( Thread-20) Created derived connector: user-10
932013-10-17 10:05:06,356 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true
942013-10-17 10:05:06,386 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
952013-10-17 10:05:06,386 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
962013-10-17 10:05:06,388 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM
972013-10-17 10:05:06,388 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
982013-10-17 10:05:06,406 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/very_small.d3d.dv
992013-10-17 10:05:06,409 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
1002013-10-17 10:05:06,409 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
1012013-10-17 10:05:06,409 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
1022013-10-17 10:05:06,410 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
1032013-10-17 10:05:06,410 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
1042013-10-17 10:05:06,411 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1052013-10-17 10:05:06,411 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 22ms. (24ms total) [0 unknowns]
1062013-10-17 10:05:06,411 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1072013-10-17 10:05:06,412 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1082013-10-17 10:05:06,412 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1092013-10-17 10:05:06,412 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true
1102013-10-17 10:05:06,662 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1112013-10-17 10:05:06,662 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1122013-10-17 10:05:07,497 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1132013-10-17 10:05:07,498 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1142013-10-17 10:05:07,498 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1152013-10-17 10:05:07,499 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM
1162013-10-17 10:05:07,500 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1172013-10-17 10:05:07,522 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/lung-lentiCMtriple-4_R3D.dv
1182013-10-17 10:05:07,525 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
1192013-10-17 10:05:07,525 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
1202013-10-17 10:05:07,525 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
1212013-10-17 10:05:07,526 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
1222013-10-17 10:05:07,526 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
1232013-10-17 10:05:07,527 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1242013-10-17 10:05:07,528 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 27ms. (28ms total) [0 unknowns]
1252013-10-17 10:05:07,528 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1262013-10-17 10:05:07,528 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1272013-10-17 10:05:07,528 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1282013-10-17 10:05:07,528 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true
1292013-10-17 10:05:07,605 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1302013-10-17 10:05:07,605 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1312013-10-17 10:05:08,608 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1322013-10-17 10:05:08,609 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1332013-10-17 10:05:08,609 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1342013-10-17 10:05:08,611 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM
1352013-10-17 10:05:08,611 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1362013-10-17 10:05:08,788 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-0) Cached networkup: true
1372013-10-17 10:05:08,826 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/off_by_1_a.dv
1382013-10-17 10:05:08,859 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
1392013-10-17 10:05:08,859 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
1402013-10-17 10:05:08,859 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
1412013-10-17 10:05:08,859 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
1422013-10-17 10:05:08,859 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
1432013-10-17 10:05:08,860 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1442013-10-17 10:05:08,861 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 249ms. (250ms total) [0 unknowns]
1452013-10-17 10:05:08,861 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1462013-10-17 10:05:08,861 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1472013-10-17 10:05:08,861 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1482013-10-17 10:05:08,861 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true
1492013-10-17 10:05:08,946 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1502013-10-17 10:05:08,946 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1512013-10-17 10:05:09,084 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-29) Cached networkup: true
1522013-10-17 10:05:09,942 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-2) Cached networkup: true
1532013-10-17 10:05:10,141 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-31) Cached networkup: true
1542013-10-17 10:05:10,193 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1552013-10-17 10:05:10,195 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1562013-10-17 10:05:10,195 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1572013-10-17 10:05:10,196 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM
1582013-10-17 10:05:10,196 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1592013-10-17 10:05:10,423 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/CFPNEAT01_R3D.dv
1602013-10-17 10:05:10,456 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
1612013-10-17 10:05:10,456 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
1622013-10-17 10:05:10,456 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
1632013-10-17 10:05:10,457 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
1642013-10-17 10:05:10,458 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
1652013-10-17 10:05:10,459 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1662013-10-17 10:05:10,460 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 263ms. (264ms total) [0 unknowns]
1672013-10-17 10:05:10,460 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1682013-10-17 10:05:10,460 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1692013-10-17 10:05:10,460 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1702013-10-17 10:05:10,460 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true
1712013-10-17 10:05:10,544 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1722013-10-17 10:05:10,544 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1732013-10-17 10:05:11,416 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-3) Network status: true (in 1 ms.)
1742013-10-17 10:05:11,622 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-33) Cached networkup: true
1752013-10-17 10:05:14,780 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1762013-10-17 10:05:14,784 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1772013-10-17 10:05:14,784 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1782013-10-17 10:05:14,785 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM
1792013-10-17 10:05:14,785 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1802013-10-17 10:05:14,977 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/IAGFP-Noc01_R3D.dv
1812013-10-17 10:05:15,002 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
1822013-10-17 10:05:15,003 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
1832013-10-17 10:05:15,003 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
1842013-10-17 10:05:15,003 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
1852013-10-17 10:05:15,004 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
1862013-10-17 10:05:15,005 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1872013-10-17 10:05:15,006 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 219ms. (221ms total) [0 unknowns]
1882013-10-17 10:05:15,006 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1892013-10-17 10:05:15,006 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1902013-10-17 10:05:15,006 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1912013-10-17 10:05:15,006 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true
1922013-10-17 10:05:15,058 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1932013-10-17 10:05:15,058 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1942013-10-17 10:05:17,744 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-0) Network status: true (in 0 ms.)
1952013-10-17 10:05:18,028 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-35) Cached networkup: true
1962013-10-17 10:05:18,222 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
1972013-10-17 10:05:18,226 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
1982013-10-17 10:05:18,226 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
1992013-10-17 10:05:18,227 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM
2002013-10-17 10:05:18,227 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2012013-10-17 10:05:18,386 INFO  [                loci.formats.ImageReader] ( Thread-20) OMETiffReader initializing /Volumes/ome/data_repo/test_images_good/dv/very_small.d3d.dv.ome.tif
2022013-10-17 10:05:18,445 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-20) Reading IFDs
2032013-10-17 10:05:18,452 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-20) Populating metadata
2042013-10-17 10:05:18,457 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2052013-10-17 10:05:18,458 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 230ms. (231ms total) [0 unknowns]
2062013-10-17 10:05:18,458 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2072013-10-17 10:05:18,458 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
2082013-10-17 10:05:18,458 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
2092013-10-17 10:05:18,458 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true
2102013-10-17 10:05:18,520 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
2112013-10-17 10:05:18,520 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
2122013-10-17 10:05:19,887 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2132013-10-17 10:05:19,891 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
2142013-10-17 10:05:19,891 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
2152013-10-17 10:05:19,912 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM
2162013-10-17 10:05:19,912 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2172013-10-17 10:05:20,134 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/SMN10ul03_R3D_D3D.dv
2182013-10-17 10:05:20,164 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
2192013-10-17 10:05:20,165 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
2202013-10-17 10:05:20,165 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
2212013-10-17 10:05:20,165 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
2222013-10-17 10:05:20,166 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
2232013-10-17 10:05:20,167 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2242013-10-17 10:05:20,168 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 255ms. (255ms total) [0 unknowns]
2252013-10-17 10:05:20,168 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2262013-10-17 10:05:20,168 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
2272013-10-17 10:05:20,168 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
2282013-10-17 10:05:20,168 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true
2292013-10-17 10:05:20,227 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
2302013-10-17 10:05:20,227 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
2312013-10-17 10:05:21,176 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-5) Cached networkup: true
2322013-10-17 10:05:21,493 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-38) Cached networkup: true
2332013-10-17 10:05:22,614 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-6) Cached networkup: true
2342013-10-17 10:05:23,006 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-39) Network status: true (in 0 ms.)
2352013-10-17 10:05:24,289 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2362013-10-17 10:05:24,296 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
2372013-10-17 10:05:24,296 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
2382013-10-17 10:05:24,296 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM
2392013-10-17 10:05:24,297 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2402013-10-17 10:05:24,519 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/test11_R3D.dv
2412013-10-17 10:05:24,550 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
2422013-10-17 10:05:24,550 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
2432013-10-17 10:05:24,550 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
2442013-10-17 10:05:24,553 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
2452013-10-17 10:05:24,557 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
2462013-10-17 10:05:24,559 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2472013-10-17 10:05:24,559 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 262ms. (263ms total) [0 unknowns]
2482013-10-17 10:05:24,559 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2492013-10-17 10:05:24,560 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
2502013-10-17 10:05:24,560 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
2512013-10-17 10:05:24,560 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true
2522013-10-17 10:05:24,616 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
2532013-10-17 10:05:24,616 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
2542013-10-17 10:05:26,572 DEBUG [penmicroscopy.shoola.util.NetworkChecker] (l.Client-5) Cached networkup: true
2552013-10-17 10:05:27,306 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-41) Cached networkup: true
2562013-10-17 10:05:29,640 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2572013-10-17 10:05:29,643 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
2582013-10-17 10:05:29,644 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
2592013-10-17 10:05:29,644 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) Depth: 4 Metadata Level: MINIMUM
2602013-10-17 10:05:29,644 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2612013-10-17 10:05:29,873 INFO  [                loci.formats.ImageReader] ( Thread-20) DeltavisionReader initializing /Volumes/ome/data_repo/test_images_good/dv/mt1_R3D_D3D.dv
2622013-10-17 10:05:29,906 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading header
2632013-10-17 10:05:29,907 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating core metadata
2642013-10-17 10:05:29,907 INFO  [              loci.formats.FormatHandler] ( Thread-20) Reading extended header
2652013-10-17 10:05:29,907 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating original metadata
2662013-10-17 10:05:29,907 INFO  [              loci.formats.FormatHandler] ( Thread-20) Populating OME metadata
2672013-10-17 10:05:29,908 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2682013-10-17 10:05:29,908 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-20) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 263ms. (264ms total) [0 unknowns]
2692013-10-17 10:05:29,909 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2702013-10-17 10:05:29,909 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
2712013-10-17 10:05:29,909 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
2722013-10-17 10:05:29,909 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Network status: true (in 0 ms.)
2732013-10-17 10:05:29,967 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) OMERO Version: 5.0.0-beta1-878-64b13ca-ice33-b439
2742013-10-17 10:05:29,967 INFO  [       ome.formats.importer.ImportConfig] ( Thread-20) Bioformats version: 5.0.0-beta1-878-64b13ca-ice33-b439 revision: 65390e7 date: 17 October 2013
2752013-10-17 10:05:31,559 DEBUG [                  ome.scifio.io.Location] ( Thread-20) Location.mapFile: embedded-stream.raw -> null
2762013-10-17 10:05:31,560 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true
2772013-10-17 10:05:31,563 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-20) Cached networkup: true
2782013-10-17 10:09:03,154 DEBUG [penmicroscopy.shoola.util.NetworkChecker] ( Thread-44) Network status: true (in 0 ms.)

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OME source code is available under the GNU General public license or through commercial license from Glencoe Software

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