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Ticket #1503: importer.log

File importer.log, 30.5 KB (added by omero, 15 years ago)

Importer Error log to import simple JPEG image, which worked under beta4.0.3

Line 
12009-09-30 11:24:25,586 8790       [  Thread-7] INFO          ome.formats.importer.LoginHandler  - Login successful!
22009-09-30 11:24:33,951 17155      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - Creating root!
32009-09-30 11:24:34,349 17553      [ Thread-12] DEBUG        ome.formats.importer.ImportLibrary  - Image Count: 3
42009-09-30 11:24:34,351 17555      [ Thread-12] DEBUG        ome.formats.importer.ImportLibrary  - Post-processing metadata.
52009-09-30 11:24:34,363 17567      [ Thread-12] DEBUG        ome.formats.model.ChannelProcessor  - Setting color channel to RGB.
62009-09-30 11:24:34,383 17587      [ Thread-12] DEBUG        ome.formats.model.ChannelProcessor  - Setting channels name to Red, Green, Blue or Alpha.
72009-09-30 11:24:34,384 17588      [ Thread-12] DEBUG        ome.formats.model.ChannelProcessor  - Setting color channel to RGB.
82009-09-30 11:24:34,385 17589      [ Thread-12] DEBUG        ome.formats.model.ChannelProcessor  - Setting channels name to Red, Green, Blue or Alpha.
92009-09-30 11:24:34,386 17590      [ Thread-12] DEBUG        ome.formats.model.ChannelProcessor  - Setting color channel to RGB.
102009-09-30 11:24:34,387 17591      [ Thread-12] DEBUG        ome.formats.model.ChannelProcessor  - Setting channels name to Red, Green, Blue or Alpha.
112009-09-30 11:24:34,390 17594      [ Thread-12] WARN       ome.formats.model.ReferenceProcessor  - Unknown target class for LSID: omero.model.Image:0
122009-09-30 11:24:34,391 17595      [ Thread-12] DEBUG        ome.formats.importer.ImportLibrary  - Saving pixels to DB.
132009-09-30 11:24:34,392 17596      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Image:0 == omero.model.ImageI@1939100,omero.model.Image:0
142009-09-30 11:24:34,393 17597      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Pixels:0:0 == omero.model.PixelsI@106c6be,Pixels:0:0
152009-09-30 11:24:34,393 17597      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Channel:0:0 == omero.model.ChannelI@1c0a077,omero.model.Channel:0:0
162009-09-30 11:24:34,394 17598      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Channel:0:1 == omero.model.ChannelI@2fe032,omero.model.Channel:0:1
172009-09-30 11:24:34,394 17598      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Channel:0:2 == omero.model.ChannelI@11a6631,omero.model.Channel:0:2
182009-09-30 11:24:34,395 17599      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.LogicalChannel:0:0 == omero.model.LogicalChannelI@196b753,omero.model.LogicalChannel:0:0
192009-09-30 11:24:34,395 17599      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.LogicalChannel:0:1 == omero.model.LogicalChannelI@89949a,omero.model.LogicalChannel:0:1
202009-09-30 11:24:34,396 17600      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.LogicalChannel:0:2 == omero.model.LogicalChannelI@1912a56,omero.model.LogicalChannel:0:2
212009-09-30 11:24:34,396 17600      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - Starting references....
222009-09-30 11:24:34,397 17601      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Image:0 == omero.model.DatasetI:52
232009-09-30 11:24:34,397 17601      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - containerCache contains 8 entries.
242009-09-30 11:24:34,398 17602      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - referenceCache contains 1 entries.
252009-09-30 11:24:34,722 17926      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - Saving pixels id: 51
262009-09-30 11:24:35,083 18287      [ Thread-12] DEBUG      ome.formats.OMEROMetadataStoreClient  - Creating root!
272009-09-30 11:25:25,443 68647      [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
282009-09-30 11:29:58,297 0          [      main] DEBUG         ome.formats.importer.ImportConfig  - User Preference Node: /ome/formats/importer
292009-09-30 11:29:58,337 40         [      main] ERROR                   ome.system.UpgradeCheck  - Error reading from url: http://upgrade.openmicroscopy.org.uk?version=Beta-4.1.0-DEV;os.name=Windows+Vista;os.arch=x86;os.version=6.0;java.runtime.version=1.6.0_16-b01;java.vm.vendor=Sun+Microsystems+Inc. "Server returned HTTP response code: 400 for URL: http://upgrade.openmicroscopy.org.uk?version=Beta-4.1.0-DEV;os.name=Windows+Vista;os.arch=x86;os.version=6.0;java.runtime.version=1.6.0_16-b01;java.vm.vendor=Sun+Microsystems+Inc."
302009-09-30 11:29:58,346 49         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded hostname from User Preference Node: /ome/formats/importer
312009-09-30 11:29:58,346 49         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded username from User Preference Node: /ome/formats/importer
322009-09-30 11:29:58,347 50         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded password from User Preference Node: /ome/formats/importer
332009-09-30 11:29:58,347 50         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded port from User Preference Node: /ome/formats/importer
342009-09-30 11:29:58,348 51         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded savedProject from User Preference Node: /ome/formats/importer
352009-09-30 11:29:58,348 51         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded savedDataset from User Preference Node: /ome/formats/importer
362009-09-30 11:29:58,348 51         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded savedScreen from User Preference Node: /ome/formats/importer
372009-09-30 11:29:58,349 52         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded session from ome.formats.importer.util.IniFileLoader@30c221
382009-09-30 11:29:58,349 52         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded session from default
392009-09-30 11:29:58,349 52         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded email from ome.formats.importer.util.IniFileLoader@30c221
402009-09-30 11:29:58,349 52         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded email from default
412009-09-30 11:29:58,350 53         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded serverList from ome.formats.importer.util.IniFileLoader@30c221
422009-09-30 11:29:58,350 53         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded serverList from default
432009-09-30 11:29:58,350 53         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded imageName from ome.formats.importer.util.IniFileLoader@30c221
442009-09-30 11:29:58,350 53         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded imageName from default
452009-09-30 11:29:58,351 54         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded imageDescription from ome.formats.importer.util.IniFileLoader@30c221
462009-09-30 11:29:58,351 54         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded imageDescription from default
472009-09-30 11:29:58,353 56         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded targetClass from ome.formats.importer.util.IniFileLoader@30c221
482009-09-30 11:29:58,353 56         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded targetClass from default
492009-09-30 11:29:58,354 57         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded targetId from User Preference Node: /ome/formats/importer
502009-09-30 11:29:58,354 57         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded debug from User Preference Node: /ome/formats/importer
512009-09-30 11:29:58,355 58         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded contOnError from User Preference Node: /ome/formats/importer
522009-09-30 11:29:58,355 58         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded sendFiles from User Preference Node: /ome/formats/importer
532009-09-30 11:29:58,356 59         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded sendFiles from User Preference Node: /ome/formats/importer
542009-09-30 11:29:58,356 59         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded useFullPath from User Preference Node: /ome/formats/importer
552009-09-30 11:29:58,357 60         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded savedFileNaming from User Preference Node: /ome/formats/importer
562009-09-30 11:29:58,357 60         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded overrideImageName from User Preference Node: /ome/formats/importer
572009-09-30 11:29:58,357 60         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded numOfDirectories from User Preference Node: /ome/formats/importer
582009-09-30 11:29:58,358 61         [      main] DEBUG         ome.formats.importer.ImportConfig  - Loaded savedDirectory from User Preference Node: /ome/formats/importer
592009-09-30 11:30:06,612 8315       [  Thread-7] ERROR     ome.formats.importer.gui.LoginHandler  - Login failure.
60Glacier2.PermissionDeniedException
61    reason = "permission denied"
62        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
63        at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source)
64        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source)
65        at java.lang.reflect.Constructor.newInstance(Unknown Source)
66        at java.lang.Class.newInstance0(Unknown Source)
67        at java.lang.Class.newInstance(Unknown Source)
68        at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2127)
69        at IceInternal.BasicStream.throwException(BasicStream.java:1541)
70        at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
71        at Glacier2._RouterDelM.createSession(_RouterDelM.java:42)
72        at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:51)
73        at Glacier2.RouterPrxHelper.createSession(RouterPrxHelper.java:21)
74        at omero.client.createSession(client.java:496)
75        at ome.formats.OMEROMetadataStoreClient.initialize(OMEROMetadataStoreClient.java:328)
76        at ome.formats.importer.ImportConfig.createStore(ImportConfig.java:261)
77        at ome.formats.importer.gui.LoginHandler.isValidLogin(LoginHandler.java:326)
78        at ome.formats.importer.gui.LoginHandler$1.run(LoginHandler.java:160)
792009-09-30 11:30:06,616 8319       [  Thread-7] INFO      ome.formats.importer.gui.LoginHandler  - Login failed!
802009-09-30 11:30:16,219 17922      [ Thread-12] INFO      ome.formats.importer.gui.LoginHandler  - Login successful!
812009-09-30 11:30:27,307 29010      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - Creating root!
822009-09-30 11:30:27,435 29138      [ Thread-17] WARN       ome.formats.OMEROMetadataStoreClient  - Duplicate LSID Pixels:0:0 exists in omero.model.PixelsI@183e965,Pixels:0:0
832009-09-30 11:30:27,438 29141      [ Thread-17] DEBUG        ome.formats.importer.ImportLibrary  - Image Count: 3
842009-09-30 11:30:27,507 29210      [ Thread-17] DEBUG        ome.formats.importer.ImportLibrary  - Post-processing metadata.
852009-09-30 11:30:27,516 29219      [ Thread-17] DEBUG        ome.formats.model.ChannelProcessor  - Setting color channel to RGB.
862009-09-30 11:30:27,538 29241      [ Thread-17] DEBUG        ome.formats.model.ChannelProcessor  - Setting channels name to Red, Green, Blue or Alpha.
872009-09-30 11:30:27,539 29242      [ Thread-17] DEBUG        ome.formats.model.ChannelProcessor  - Setting color channel to RGB.
882009-09-30 11:30:27,541 29244      [ Thread-17] DEBUG        ome.formats.model.ChannelProcessor  - Setting channels name to Red, Green, Blue or Alpha.
892009-09-30 11:30:27,542 29245      [ Thread-17] DEBUG        ome.formats.model.ChannelProcessor  - Setting color channel to RGB.
902009-09-30 11:30:27,542 29245      [ Thread-17] DEBUG        ome.formats.model.ChannelProcessor  - Setting channels name to Red, Green, Blue or Alpha.
912009-09-30 11:30:27,549 29252      [ Thread-17] DEBUG        ome.formats.importer.ImportLibrary  - Saving pixels to DB.
922009-09-30 11:30:27,551 29254      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Image:0 == omero.model.ImageI@1fd360b,omero.model.Image:0
932009-09-30 11:30:27,552 29255      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.OriginalFile:0 == omero.model.OriginalFileI@1c1cfc1,omero.model.OriginalFile:0
942009-09-30 11:30:27,553 29256      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Pixels:0:0 == omero.model.PixelsI@183e965,Pixels:0:0
952009-09-30 11:30:27,554 29257      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Channel:0:0 == omero.model.ChannelI@8b3bb3,omero.model.Channel:0:0
962009-09-30 11:30:27,555 29258      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Channel:0:1 == omero.model.ChannelI@1098594,omero.model.Channel:0:1
972009-09-30 11:30:27,556 29259      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Channel:0:2 == omero.model.ChannelI@d175ff,omero.model.Channel:0:2
982009-09-30 11:30:27,557 29260      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.FileAnnotation:0:0 == omero.model.FileAnnotationI@738dcb,omero.model.FileAnnotation:0:0
992009-09-30 11:30:27,558 29261      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.LogicalChannel:0:0 == omero.model.LogicalChannelI@1c2dad7,omero.model.LogicalChannel:0:0
1002009-09-30 11:30:27,559 29262      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.LogicalChannel:0:1 == omero.model.LogicalChannelI@1a8e53c,omero.model.LogicalChannel:0:1
1012009-09-30 11:30:27,560 29263      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.LogicalChannel:0:2 == omero.model.LogicalChannelI@1e35ecd,omero.model.LogicalChannel:0:2
1022009-09-30 11:30:27,561 29264      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - Starting references....
1032009-09-30 11:30:27,562 29265      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Image:0 == omero.model.FileAnnotation:0:0
1042009-09-30 11:30:27,562 29265      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Image:0 == omero.model.DatasetI:52
1052009-09-30 11:30:27,563 29266      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.FileAnnotation:0:0 == omero.model.OriginalFile:0
1062009-09-30 11:30:27,563 29266      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - containerCache contains 10 entries.
1072009-09-30 11:30:27,563 29266      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - referenceCache contains 3 entries.
1082009-09-30 11:30:27,579 29282      [ Thread-17] ERROR      ome.formats.importer.gui.GuiImporter  - EXCEPTION_EVENT
109Ice.UnknownLocalException
110    unknown = "Ice::UnmarshalOutOfBoundsException
111               Ice.UnmarshalOutOfBoundsException
112                   reason = (null)
113                at IceInternal.BasicStream.readString(BasicStream.java:1264)
114                at IceInternal.BasicStream.readTypeId(BasicStream.java:625)
115                at IceInternal.BasicStream.readObject(BasicStream.java:1407)
116                at omero.model.ImageAnnotationLinksSeqHelper.read(ImageAnnotationLinksSeqHelper.java:44)
117                at omero.model.Image.__read(Image.java:2020)
118                at IceInternal.BasicStream.readObject(BasicStream.java:1500)
119                at IceInternal.BasicStream.readPendingObjects(BasicStream.java:1632)
120                at omero.api._MetadataStoreDisp.___updateObjects(_MetadataStoreDisp.java:161)
121                at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:308)
122                at IceInternal.Incoming.invoke(Incoming.java:166)
123                at Ice.ConnectionI.invokeAll(ConnectionI.java:2045)
124                at Ice.ConnectionI.message(ConnectionI.java:977)
125                at IceInternal.ThreadPool.run(ThreadPool.java:575)
126                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
127                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:951)
128               "
129        at IceInternal.Outgoing.invoke(Outgoing.java:147)
130        at omero.api._MetadataStoreDelM.updateObjects(_MetadataStoreDelM.java:210)
131        at omero.api.MetadataStorePrxHelper.updateObjects(MetadataStorePrxHelper.java:322)
132        at omero.api.MetadataStorePrxHelper.updateObjects(MetadataStorePrxHelper.java:294)
133        at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2735)
134        at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:220)
135        at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:287)
136        at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:184)
137        at ome.formats.importer.gui.ImportHandler.access$000(ImportHandler.java:48)
138        at ome.formats.importer.gui.ImportHandler$1.run(ImportHandler.java:99)
1392009-09-30 11:30:27,581 29284      [ Thread-17] ERROR      ome.formats.importer.gui.GuiImporter  - INTERNAL_EXCEPTION
140Ice.UnknownLocalException
141    unknown = "Ice::UnmarshalOutOfBoundsException
142               Ice.UnmarshalOutOfBoundsException
143                   reason = (null)
144                at IceInternal.BasicStream.readString(BasicStream.java:1264)
145                at IceInternal.BasicStream.readTypeId(BasicStream.java:625)
146                at IceInternal.BasicStream.readObject(BasicStream.java:1407)
147                at omero.model.ImageAnnotationLinksSeqHelper.read(ImageAnnotationLinksSeqHelper.java:44)
148                at omero.model.Image.__read(Image.java:2020)
149                at IceInternal.BasicStream.readObject(BasicStream.java:1500)
150                at IceInternal.BasicStream.readPendingObjects(BasicStream.java:1632)
151                at omero.api._MetadataStoreDisp.___updateObjects(_MetadataStoreDisp.java:161)
152                at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:308)
153                at IceInternal.Incoming.invoke(Incoming.java:166)
154                at Ice.ConnectionI.invokeAll(ConnectionI.java:2045)
155                at Ice.ConnectionI.message(ConnectionI.java:977)
156                at IceInternal.ThreadPool.run(ThreadPool.java:575)
157                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
158                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:951)
159               "
160        at IceInternal.Outgoing.invoke(Outgoing.java:147)
161        at omero.api._MetadataStoreDelM.updateObjects(_MetadataStoreDelM.java:210)
162        at omero.api.MetadataStorePrxHelper.updateObjects(MetadataStorePrxHelper.java:322)
163        at omero.api.MetadataStorePrxHelper.updateObjects(MetadataStorePrxHelper.java:294)
164        at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2735)
165        at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:220)
166        at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:287)
167        at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:184)
168        at ome.formats.importer.gui.ImportHandler.access$000(ImportHandler.java:48)
169        at ome.formats.importer.gui.ImportHandler$1.run(ImportHandler.java:99)
1702009-09-30 11:30:27,581 29284      [ Thread-17] ERROR  importer.gui.ErrorHandler$MyErrorHandler  - INTERNAL_EXCEPTION: C:\Users\gbonamy\Pictures\Sugestion Icon.jpg
171Ice.UnknownLocalException
172    unknown = "Ice::UnmarshalOutOfBoundsException
173               Ice.UnmarshalOutOfBoundsException
174                   reason = (null)
175                at IceInternal.BasicStream.readString(BasicStream.java:1264)
176                at IceInternal.BasicStream.readTypeId(BasicStream.java:625)
177                at IceInternal.BasicStream.readObject(BasicStream.java:1407)
178                at omero.model.ImageAnnotationLinksSeqHelper.read(ImageAnnotationLinksSeqHelper.java:44)
179                at omero.model.Image.__read(Image.java:2020)
180                at IceInternal.BasicStream.readObject(BasicStream.java:1500)
181                at IceInternal.BasicStream.readPendingObjects(BasicStream.java:1632)
182                at omero.api._MetadataStoreDisp.___updateObjects(_MetadataStoreDisp.java:161)
183                at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:308)
184                at IceInternal.Incoming.invoke(Incoming.java:166)
185                at Ice.ConnectionI.invokeAll(ConnectionI.java:2045)
186                at Ice.ConnectionI.message(ConnectionI.java:977)
187                at IceInternal.ThreadPool.run(ThreadPool.java:575)
188                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
189                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:951)
190               "
191        at IceInternal.Outgoing.invoke(Outgoing.java:147)
192        at omero.api._MetadataStoreDelM.updateObjects(_MetadataStoreDelM.java:210)
193        at omero.api.MetadataStorePrxHelper.updateObjects(MetadataStorePrxHelper.java:322)
194        at omero.api.MetadataStorePrxHelper.updateObjects(MetadataStorePrxHelper.java:294)
195        at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2735)
196        at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:220)
197        at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:287)
198        at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:184)
199        at ome.formats.importer.gui.ImportHandler.access$000(ImportHandler.java:48)
200        at ome.formats.importer.gui.ImportHandler$1.run(ImportHandler.java:99)
2012009-09-30 11:30:27,585 29288      [ Thread-17] ERROR  e.formats.importer.gui.GuiCommonElements  - Couldn't find icon: null
2022009-09-30 11:30:27,587 29290      [ Thread-17] ERROR  e.formats.importer.gui.GuiCommonElements  - Couldn't find icon: null
2032009-09-30 11:30:27,587 29290      [ Thread-17] DEBUG      ome.formats.OMEROMetadataStoreClient  - Creating root!
2042009-09-30 11:30:27,599 29302      [ Thread-17] ERROR    ome.formats.importer.gui.ImportHandler  - Generic error while importing image.
205Ice.UnknownLocalException
206    unknown = "Ice::UnmarshalOutOfBoundsException
207               Ice.UnmarshalOutOfBoundsException
208                   reason = (null)
209                at IceInternal.BasicStream.readString(BasicStream.java:1264)
210                at IceInternal.BasicStream.readTypeId(BasicStream.java:625)
211                at IceInternal.BasicStream.readObject(BasicStream.java:1407)
212                at omero.model.ImageAnnotationLinksSeqHelper.read(ImageAnnotationLinksSeqHelper.java:44)
213                at omero.model.Image.__read(Image.java:2020)
214                at IceInternal.BasicStream.readObject(BasicStream.java:1500)
215                at IceInternal.BasicStream.readPendingObjects(BasicStream.java:1632)
216                at omero.api._MetadataStoreDisp.___updateObjects(_MetadataStoreDisp.java:161)
217                at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:308)
218                at IceInternal.Incoming.invoke(Incoming.java:166)
219                at Ice.ConnectionI.invokeAll(ConnectionI.java:2045)
220                at Ice.ConnectionI.message(ConnectionI.java:977)
221                at IceInternal.ThreadPool.run(ThreadPool.java:575)
222                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
223                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:951)
224               "
225        at IceInternal.Outgoing.invoke(Outgoing.java:147)
226        at omero.api._MetadataStoreDelM.updateObjects(_MetadataStoreDelM.java:210)
227        at omero.api.MetadataStorePrxHelper.updateObjects(MetadataStorePrxHelper.java:322)
228        at omero.api.MetadataStorePrxHelper.updateObjects(MetadataStorePrxHelper.java:294)
229        at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2735)
230        at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:220)
231        at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:287)
232        at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:184)
233        at ome.formats.importer.gui.ImportHandler.access$000(ImportHandler.java:48)
234        at ome.formats.importer.gui.ImportHandler$1.run(ImportHandler.java:99)
2352009-09-30 11:30:27,600 29303      [ Thread-17] DEBUG      ome.formats.importer.gui.GuiImporter  - Ice.UnknownLocalException
236    unknown = "Ice::UnmarshalOutOfBoundsException
237               Ice.UnmarshalOutOfBoundsException
238                   reason = (null)
239                at IceInternal.BasicStream.readString(BasicStream.java:1264)
240                at IceInternal.BasicStream.readTypeId(BasicStream.java:625)
241                at IceInternal.BasicStream.readObject(BasicStream.java:1407)
242                at omero.model.ImageAnnotationLinksSeqHelper.read(ImageAnnotationLinksSeqHelper.java:44)
243                at omero.model.Image.__read(Image.java:2020)
244                at IceInternal.BasicStream.readObject(BasicStream.java:1500)
245                at IceInternal.BasicStream.readPendingObjects(BasicStream.java:1632)
246                at omero.api._MetadataStoreDisp.___updateObjects(_MetadataStoreDisp.java:161)
247                at omero.api._MetadataStoreDisp.__dispatch(_MetadataStoreDisp.java:308)
248                at IceInternal.Incoming.invoke(Incoming.java:166)
249                at Ice.ConnectionI.invokeAll(ConnectionI.java:2045)
250                at Ice.ConnectionI.message(ConnectionI.java:977)
251                at IceInternal.ThreadPool.run(ThreadPool.java:575)
252                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
253                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:951)
254               "
255        at IceInternal.Outgoing.invoke(Outgoing.java:147)
256        at omero.api._MetadataStoreDelM.updateObjects(_MetadataStoreDelM.java:210)
257        at omero.api.MetadataStorePrxHelper.updateObjects(MetadataStorePrxHelper.java:322)
258        at omero.api.MetadataStorePrxHelper.updateObjects(MetadataStorePrxHelper.java:294)
259        at ome.formats.OMEROMetadataStoreClient.saveToDB(OMEROMetadataStoreClient.java:2735)
260        at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:220)
261        at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:287)
262        at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:184)
263        at ome.formats.importer.gui.ImportHandler.access$000(ImportHandler.java:48)
264        at ome.formats.importer.gui.ImportHandler$1.run(ImportHandler.java:99)
265
2662009-09-30 11:31:16,074 77777      [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2672009-09-30 11:32:16,086 137789     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2682009-09-30 11:33:16,098 197801     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2692009-09-30 11:33:26,261 207964     [  Thread-3] DEBUG      ome.formats.importer.gui.GuiImporter  - Running shutdown hook.
2702009-09-30 11:33:26,263 207966     [  Thread-3] DEBUG      ome.formats.importer.gui.GuiImporter  - Shutdown called
2712009-09-30 11:33:26,264 207967     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved hostname to User Preference Node: /ome/formats/importer
2722009-09-30 11:33:26,265 207968     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved username to User Preference Node: /ome/formats/importer
2732009-09-30 11:33:26,265 207968     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved password to User Preference Node: /ome/formats/importer
2742009-09-30 11:33:26,266 207969     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved port to User Preference Node: /ome/formats/importer
2752009-09-30 11:33:26,266 207969     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved savedProject to User Preference Node: /ome/formats/importer
2762009-09-30 11:33:26,266 207969     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved savedDataset to User Preference Node: /ome/formats/importer
2772009-09-30 11:33:26,267 207970     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved savedScreen to User Preference Node: /ome/formats/importer
2782009-09-30 11:33:26,267 207970     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Freshly saved session to User Preference Node: /ome/formats/importer
2792009-09-30 11:33:26,267 207970     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Freshly saved email to User Preference Node: /ome/formats/importer
2802009-09-30 11:33:26,268 207971     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Freshly saved serverList to User Preference Node: /ome/formats/importer
2812009-09-30 11:33:26,268 207971     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Freshly saved imageName to User Preference Node: /ome/formats/importer
2822009-09-30 11:33:26,268 207971     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Freshly saved imageDescription to User Preference Node: /ome/formats/importer
2832009-09-30 11:33:26,269 207972     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Freshly saved targetClass to User Preference Node: /ome/formats/importer
2842009-09-30 11:33:26,269 207972     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved targetId to User Preference Node: /ome/formats/importer
2852009-09-30 11:33:26,270 207973     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved debug to User Preference Node: /ome/formats/importer
2862009-09-30 11:33:26,270 207973     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved contOnError to User Preference Node: /ome/formats/importer
2872009-09-30 11:33:26,270 207973     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved sendFiles to User Preference Node: /ome/formats/importer
2882009-09-30 11:33:26,271 207974     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved sendFiles to User Preference Node: /ome/formats/importer
2892009-09-30 11:33:26,271 207974     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved useFullPath to User Preference Node: /ome/formats/importer
2902009-09-30 11:33:26,273 207976     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved savedFileNaming to User Preference Node: /ome/formats/importer
2912009-09-30 11:33:26,273 207976     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved overrideImageName to User Preference Node: /ome/formats/importer
2922009-09-30 11:33:26,273 207976     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved numOfDirectories to User Preference Node: /ome/formats/importer
2932009-09-30 11:33:26,274 207977     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Saved savedDirectory to User Preference Node: /ome/formats/importer
2942009-09-30 11:33:26,275 207978     [  Thread-3] DEBUG         ome.formats.importer.ImportConfig  - Freshly saved readersPath to User Preference Node: /ome/formats/importer

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