| 1 | Last login: Tue Jul 6 10:17:52 on console |
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| 2 | wjm:~ will$ jps -v |
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| 3 | 192 Jps -Dapplication.home=/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home -Xms8m |
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| 4 | wjm:~ will$ cd Documents/workspace/Omero/components/tools/OmeroPy/scripts/ |
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| 5 | wjm:scripts will$ omero admin start |
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| 6 | Initializing /Users/will/Documents/workspace/Omero/dist/var/log |
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| 7 | No descriptor given. Using etc/grid/default.xml |
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| 8 | Waiting on startup. Use CTRL-C to exit |
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| 9 | wjm:scripts will$ omero -s localhost -u root script list |
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| 10 | Previously logged in to localhost as root |
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| 11 | Password: |
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| 12 | Created session 2d691403-bdc0-49bd-aa27-91564fc293b6 (root@localhost). Idle timeout: 10.0 min. Current group: system |
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| 13 | id | Official scripts |
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| 14 | -----+-------------------------------------------- |
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| 15 | 702 | /EMAN2/Run_Spider_Procedure.py |
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| 16 | 101 | /omero/analysis_scripts/FLIM.py |
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| 17 | 102 | /omero/export_scripts/Make_Movie.py |
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| 18 | 152 | /omero/figure_scripts/Movie_Figure.py |
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| 19 | 601 | /omero/figure_scripts/Movie_ROI_Figure.py |
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| 20 | 602 | /omero/figure_scripts/ROI_Split_Figure.py |
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| 21 | 155 | /omero/figure_scripts/Split_View_Figure.py |
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| 22 | 156 | /omero/figure_scripts/Thumbnail_Figure.py |
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| 23 | 603 | /omero/import_scripts/Populate_ROI.py |
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| 24 | 108 | /omero/setup_scripts/FLIM_initialise.py |
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| 25 | 109 | /omero/util_scripts/Combine_Images.py |
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| 26 | 158 | /omero/util_scripts/Images_From_ROIs.py |
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| 27 | wjm:scripts will$ omero -s localhost -u root script replace 702 EMAN2/Run_Spider_Procedure.py |
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| 28 | Using session 2d691403-bdc0-49bd-aa27-91564fc293b6 (root@localhost). Idle timeout: 10.0 min. Current group: system |
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| 29 | Traceback (most recent call last): |
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| 30 | File "/Users/will/Documents/workspace/Omero/dist/bin/omero", line 139, in <module> |
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| 31 | rv = omero.cli.argv() |
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| 32 | File "/Users/will/Documents/workspace/Omero/dist/lib/python/omero/cli.py", line 1111, in argv |
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| 33 | cli.invoke(args[1:]) |
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| 34 | File "/Users/will/Documents/workspace/Omero/dist/lib/python/omero/cli.py", line 697, in invoke |
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| 35 | stop = self.onecmd(line, previous_args) |
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| 36 | File "/Users/will/Documents/workspace/Omero/dist/lib/python/omero/cli.py", line 740, in onecmd |
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| 37 | self.execute(line, previous_args) |
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| 38 | File "/Users/will/Documents/workspace/Omero/dist/lib/python/omero/cli.py", line 820, in execute |
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| 39 | args.func(args) |
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| 40 | File "/Users/will/Documents/workspace/Omero/dist/lib/python/omero/plugins/script.py", line 503, in replace |
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| 41 | client.upload(fpath, ofile=ofile) |
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| 42 | File "/Users/will/Documents/workspace/Omero/dist/lib/python/omero/clients.py", line 621, in upload |
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| 43 | prx.truncate(size) # ticket:2337 |
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| 44 | File "/Users/will/Documents/workspace/Omero/dist/lib/python/omero_api_RawFileStore_ice.py", line 103, in truncate |
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| 45 | return _M_omero.api.RawFileStore._op_truncate.invoke(self, ((length, ), _ctx)) |
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| 46 | omero.InternalException: exception ::omero::InternalException |
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| 47 | { |
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| 48 | serverStackTrace = java.nio.channels.NonWritableChannelException |
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| 49 | at sun.nio.ch.FileChannelImpl.truncate(FileChannelImpl.java:328) |
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| 50 | at ome.services.blitz.repo.RepoRawFileStoreI.truncate_async(RepoRawFileStoreI.java:117) |
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| 51 | at omero.api._RawFileStoreTie.truncate_async(_RawFileStoreTie.java:99) |
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| 52 | at omero.api._RawFileStoreDisp.___truncate(_RawFileStoreDisp.java:223) |
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| 53 | at omero.api._RawFileStoreDisp.__dispatch(_RawFileStoreDisp.java:375) |
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| 54 | at IceInternal.Incoming.invoke(Incoming.java:159) |
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| 55 | at Ice.ConnectionI.invokeAll(ConnectionI.java:2037) |
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| 56 | at Ice.ConnectionI.message(ConnectionI.java:972) |
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| 57 | at IceInternal.ThreadPool.run(ThreadPool.java:577) |
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| 58 | at IceInternal.ThreadPool.access$100(ThreadPool.java:12) |
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| 59 | at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971) |
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| 60 | |
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| 61 | serverExceptionClass = java.nio.channels.NonWritableChannelException |
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| 62 | message = |
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| 63 | } |
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| 64 | wjm:scripts will$ jps -v |
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| 65 | 210 blitz.jar -Xmx256M -Djava.awt.headless=true -Dlog4j.configuration=etc/log4j-indexing.xml -Domero.logfile=var/log/${omero.name}.log -Domero.name=Indexer-0 |
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| 66 | 207 blitz.jar -Xmx512M -Djava.awt.headless=true -Dlog4j.configuration=etc/log4j.xml -Domero.logfile=var/log/${omero.name}.log -Domero.name=Blitz-0 |
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| 67 | 238 Jps -Dapplication.home=/System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home -Xms8m |
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| 68 | wjm:scripts will$ /usr/sbin/lsof -p 207 |
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| 69 | COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME |
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| 70 | java 207 will cwd DIR 14,2 306 11954193 /Users/will/Documents/workspace/Omero/dist |
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| 71 | java 207 will txt REG 14,2 197232 11190927 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/java |
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| 72 | java 207 will txt REG 14,2 285552 11192782 /System/Library/Frameworks/JavaVM.framework/Versions/A/JavaVM |
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| 73 | java 207 will txt REG 14,2 32768 11995076 /private/var/folders/mk/mkOc3rWtEp8VZpBVn5VFpE+++TI/-Tmp-/hsperfdata_will/207 |
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| 74 | java 207 will txt REG 14,2 159264 11191535 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libverify.dylib |
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| 75 | java 207 will txt REG 14,2 331328 11192446 /System/Library/Frameworks/JavaVM.framework/Versions/A/Frameworks/JavaNativeFoundation.framework/Versions/A/JavaNativeFoundation |
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| 76 | java 207 will txt REG 14,2 555376 11191521 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libjava.jnilib |
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| 77 | java 207 will txt REG 14,2 227424 11191536 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libzip.jnilib |
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| 78 | java 207 will txt REG 14,2 336884 11190888 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Classes/ui.jar |
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| 79 | java 207 will txt REG 14,2 889086 11190887 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Classes/laf.jar |
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| 80 | java 207 will txt REG 14,2 15230480 11190244 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libclient.dylib |
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| 81 | java 207 will txt REG 14,2 280148 11190886 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Classes/jsse.jar |
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| 82 | java 207 will txt REG 14,2 82642 11190884 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Classes/jce.jar |
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| 83 | java 207 will txt REG 14,2 4668919 11190881 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Classes/charsets.jar |
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| 84 | java 207 will txt REG 14,2 96242 11993133 /Users/will/Documents/workspace/Omero/dist/lib/server/perf4j.jar |
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| 85 | java 207 will txt REG 14,2 6470 11190253 /System/Library/Java/Extensions/AppleScriptEngine.jar |
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| 86 | java 207 will txt REG 14,2 22667289 11190882 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Classes/classes.jar |
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| 87 | java 207 will txt REG 14,2 13946012 11993189 /Users/will/Documents/workspace/Omero/dist/lib/server/blitz.jar |
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| 88 | java 207 will txt REG 14,2 23445 11993090 /Users/will/Documents/workspace/Omero/dist/lib/server/slf4j-api.jar |
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| 89 | java 207 will txt REG 14,2 110784 11191529 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libmanagement.jnilib |
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| 90 | java 207 will txt REG 14,2 9679 11993111 /Users/will/Documents/workspace/Omero/dist/lib/server/slf4j-log4j12.jar |
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| 91 | java 207 will txt REG 14,2 24590 2151834 /Library/Java/Extensions/CsInline.jar |
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| 92 | java 207 will txt REG 14,2 6500500 2151832 /Library/Java/Extensions/calculator.jar |
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| 93 | java 207 will txt REG 14,2 67385 2151833 /Library/Java/Extensions/ChimePro.jar |
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| 94 | java 207 will txt REG 14,2 761342 2151835 /Library/Java/Extensions/dbb_client.jar |
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| 95 | java 207 will txt REG 14,2 2424933 2151836 /Library/Java/Extensions/dbb_helps.jar |
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| 96 | java 207 will txt REG 14,2 130045 2151838 /Library/Java/Extensions/dbb_images.jar |
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| 97 | java 207 will txt REG 14,2 657746 2151839 /Library/Java/Extensions/editor.jar |
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| 98 | java 207 will txt REG 14,2 618824 2151840 /Library/Java/Extensions/editor_help.jar |
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| 99 | java 207 will txt REG 14,2 68860 2151841 /Library/Java/Extensions/editor_legend.jar |
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| 100 | java 207 will txt REG 14,2 83183 2151842 /Library/Java/Extensions/editor_templates.jar |
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| 101 | java 207 will txt REG 14,2 247647 2151843 /Library/Java/Extensions/extlibs.jar |
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| 102 | java 207 will txt REG 14,2 718824 2151844 /Library/Java/Extensions/mdli_mt.jar |
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| 103 | java 207 will txt REG 14,2 127216 443158 /System/Library/Java/Extensions/CoreAudio.jar |
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| 104 | java 207 will txt REG 14,2 17045 443159 /System/Library/Java/Extensions/dns_sd.jar |
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| 105 | java 207 will txt REG 14,2 1245588 443160 /System/Library/Java/Extensions/j3daudio.jar |
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| 106 | java 207 will txt REG 14,2 1340102 443161 /System/Library/Java/Extensions/j3dcore.jar |
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| 107 | java 207 will txt REG 14,2 789164 443162 /System/Library/Java/Extensions/j3dutils.jar |
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| 108 | java 207 will txt REG 14,2 328952 443163 /System/Library/Java/Extensions/jai_codec.jar |
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| 109 | java 207 will txt REG 14,2 1893836 443164 /System/Library/Java/Extensions/jai_core.jar |
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| 110 | java 207 will txt REG 14,2 41239 443172 /System/Library/Java/Extensions/mlibwrapper_jai.jar |
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| 111 | java 207 will txt REG 14,2 12837 11190378 /System/Library/Java/Extensions/MRJToolkit.jar |
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| 112 | java 207 will txt REG 14,2 938686 6361965 /System/Library/Java/Extensions/QTJava.zip |
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| 113 | java 207 will txt REG 14,2 153874 443175 /System/Library/Java/Extensions/vecmath.jar |
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| 114 | java 207 will txt REG 14,2 4615 11993138 /Users/will/Documents/workspace/Omero/dist/lib/server/com.springsource.org.aopalliance.jar |
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| 115 | java 207 will txt REG 14,2 44334 11190965 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/ext/apple_provider.jar |
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| 116 | java 207 will txt REG 14,2 8204 11190966 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/ext/dnsns.jar |
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| 117 | java 207 will txt REG 14,2 449774 11190967 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/ext/localedata.jar |
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| 118 | java 207 will txt REG 14,2 158419 11190968 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/ext/sunjce_provider.jar |
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| 119 | java 207 will txt REG 14,2 404083 11190969 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/ext/sunpkcs11.jar |
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| 120 | java 207 will txt REG 14,2 63167 11993085 /Users/will/Documents/workspace/Omero/dist/lib/server/FontBox.jar |
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| 121 | java 207 will txt REG 14,2 3321771 11993102 /Users/will/Documents/workspace/Omero/dist/lib/server/PDFBox.jar |
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| 122 | java 207 will txt REG 14,2 56290 11993136 /Users/will/Documents/workspace/Omero/dist/lib/server/activation.jar |
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| 123 | java 207 will txt REG 14,2 443432 11993100 /Users/will/Documents/workspace/Omero/dist/lib/server/antlr.jar |
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| 124 | java 207 will txt REG 14,2 16757 11993118 /Users/will/Documents/workspace/Omero/dist/lib/server/asm-attrs.jar |
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| 125 | java 207 will txt REG 14,2 26361 11993113 /Users/will/Documents/workspace/Omero/dist/lib/server/asm.jar |
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| 126 | java 207 will txt REG 14,2 322386 11993132 /Users/will/Documents/workspace/Omero/dist/lib/server/backport-util-concurrent.jar |
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| 127 | java 207 will txt REG 14,2 73710 11993077 /Users/will/Documents/workspace/Omero/dist/lib/server/batik-parser.jar |
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| 128 | java 207 will txt REG 14,2 128334 11993137 /Users/will/Documents/workspace/Omero/dist/lib/server/batik-util.jar |
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| 129 | java 207 will txt REG 14,2 5236 11993125 /Users/will/Documents/workspace/Omero/dist/lib/server/batik.jar |
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| 130 | java 207 will txt REG 14,2 1438847 11993104 /Users/will/Documents/workspace/Omero/dist/lib/server/bio-formats.jar |
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| 131 | java 207 will txt REG 14,2 1108473 11993093 /Users/will/Documents/workspace/Omero/dist/lib/server/jai_imageio.jar |
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| 132 | java 207 will txt REG 14,2 84992 11993116 /Users/will/Documents/workspace/Omero/dist/lib/server/loci-common.jar |
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| 133 | java 207 will txt REG 14,2 82587 11993075 /Users/will/Documents/workspace/Omero/dist/lib/server/mdbtools-java.jar |
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| 134 | java 207 will txt REG 14,2 395618 11993071 /Users/will/Documents/workspace/Omero/dist/lib/server/ome-xml.jar |
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| 135 | java 207 will txt REG 14,2 910347 11993141 /Users/will/Documents/workspace/Omero/dist/lib/server/poi-loci.jar |
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| 136 | java 207 will txt REG 14,2 60841 11993088 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-logging.jar |
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| 137 | java 207 will txt REG 14,2 257062 11993082 /Users/will/Documents/workspace/Omero/dist/lib/server/btm.jar |
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| 138 | java 207 will txt REG 14,2 471784 11993069 /Users/will/Documents/workspace/Omero/dist/lib/server/bufr.jar |
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| 139 | java 207 will txt REG 14,2 278682 11993083 /Users/will/Documents/workspace/Omero/dist/lib/server/cglib.jar |
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| 140 | java 207 will txt REG 14,2 83148 11993140 /Users/will/Documents/workspace/Omero/dist/lib/server/common.jar |
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| 141 | java 207 will txt REG 14,2 231320 11993080 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-beanutils.jar |
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| 142 | java 207 will txt REG 14,2 571259 11993074 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-collections.jar |
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| 143 | java 207 will txt REG 14,2 313898 11993092 /Users/will/Documents/workspace/Omero/dist/lib/server/dom4j.jar |
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| 144 | java 207 will txt REG 14,2 56262 11993063 /Users/will/Documents/workspace/Omero/dist/lib/server/dsl.jar |
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| 145 | java 207 will txt REG 14,2 150195 11993068 /Users/will/Documents/workspace/Omero/dist/lib/server/jamon.jar |
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| 146 | java 207 will txt REG 14,2 4464 11993073 /Users/will/Documents/workspace/Omero/dist/lib/server/jul-to-slf4j.jar |
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| 147 | java 207 will txt REG 14,2 351101 11993108 /Users/will/Documents/workspace/Omero/dist/lib/server/log4j.jar |
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| 148 | java 207 will txt REG 14,2 320296 11993084 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.aop.jar |
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| 149 | java 207 will txt REG 14,2 355598 11993065 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.core.jar |
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| 150 | java 207 will txt REG 14,2 778531 11992697 /Users/will/Documents/workspace/Omero/dist/lib/server/services.jar |
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| 151 | java 207 will txt REG 14,2 100884 11993072 /Users/will/Documents/workspace/Omero/dist/lib/server/hibernate-jpa-2.0-api.jar |
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| 152 | java 207 will txt REG 14,2 313784 11993143 /Users/will/Documents/workspace/Omero/dist/lib/server/hibernate-search.jar |
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| 153 | java 207 will txt REG 14,2 62574 11993086 /Users/will/Documents/workspace/Omero/dist/lib/server/hibernate-validator.jar |
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| 154 | java 207 will txt REG 14,2 3893179 11993098 /Users/will/Documents/workspace/Omero/dist/lib/server/hibernate.jar |
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| 155 | java 207 will txt REG 14,2 597476 11993087 /Users/will/Documents/workspace/Omero/dist/lib/server/javassist.jar |
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| 156 | java 207 will txt REG 14,2 822794 11993142 /Users/will/Documents/workspace/Omero/dist/lib/server/lucene-core.jar |
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| 157 | java 207 will txt REG 14,2 91152 11993103 /Users/will/Documents/workspace/Omero/dist/lib/server/lucene-highlighter.jar |
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| 158 | java 207 will txt REG 14,2 18505 11993106 /Users/will/Documents/workspace/Omero/dist/lib/server/lucene-spellchecker.jar |
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| 159 | java 207 will txt REG 14,2 1005276 11993096 /Users/will/Documents/workspace/Omero/dist/lib/server/model-psql.jar |
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| 160 | java 207 will txt REG 14,2 53088 11993079 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.asm.jar |
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| 161 | java 207 will txt REG 14,2 547837 11993078 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.beans.jar |
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| 162 | java 207 will txt REG 14,2 656978 11993095 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.context.jar |
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| 163 | java 207 will txt REG 14,2 156137 11993131 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.expression.jar |
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| 164 | java 207 will txt REG 14,2 377647 11993094 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.jdbc.jar |
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| 165 | java 207 will txt REG 14,2 331286 11993120 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.orm.jar |
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| 166 | java 207 will txt REG 14,2 228765 11993121 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.transaction.jar |
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| 167 | java 207 will txt REG 14,2 448141 11993099 /Users/will/Documents/workspace/Omero/dist/lib/server/postgresql.jar |
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| 168 | java 207 will txt REG 14,2 46725 11993128 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-codec.jar |
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| 169 | java 207 will txt REG 14,2 305001 11993076 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-httpclient.jar |
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| 170 | java 207 will txt REG 14,2 109043 11993115 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-io.jar |
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| 171 | java 207 will txt REG 14,2 207723 11993139 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-lang.jar |
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| 172 | java 207 will txt REG 14,2 42492 11993134 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-pool.jar |
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| 173 | java 207 will txt REG 14,2 263854 11993119 /Users/will/Documents/workspace/Omero/dist/lib/server/ehcache.jar |
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| 174 | java 207 will txt REG 14,2 13468 11993089 /Users/will/Documents/workspace/Omero/dist/lib/server/geronimo-spec-jta.jar |
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| 175 | java 207 will txt REG 14,2 312184 11993129 /Users/will/Documents/workspace/Omero/dist/lib/server/grib.jar |
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| 176 | java 207 will txt REG 14,2 237213 11993107 /Users/will/Documents/workspace/Omero/dist/lib/server/ice-db.jar |
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| 177 | java 207 will txt REG 14,2 1591295 11993064 /Users/will/Documents/workspace/Omero/dist/lib/server/ice.jar |
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| 178 | java 207 will txt REG 14,2 33687 11993135 /Users/will/Documents/workspace/Omero/dist/lib/server/ini4j.jar |
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| 179 | java 207 will txt REG 14,2 56709 11993097 /Users/will/Documents/workspace/Omero/dist/lib/server/java-getopt.jar |
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| 180 | java 207 will txt REG 14,2 8277 11993126 /Users/will/Documents/workspace/Omero/dist/lib/server/jsr107cache.jar |
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| 181 | java 207 will txt REG 14,2 599212 11993114 /Users/will/Documents/workspace/Omero/dist/lib/server/jts.jar |
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| 182 | java 207 will txt REG 14,2 371264 11993117 /Users/will/Documents/workspace/Omero/dist/lib/server/mail.jar |
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| 183 | java 207 will txt REG 14,2 2554323 11993130 /Users/will/Documents/workspace/Omero/dist/lib/server/netcdf.jar |
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| 184 | java 207 will txt REG 14,2 425779 11993105 /Users/will/Documents/workspace/Omero/dist/lib/server/ome-java.jar |
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| 185 | java 207 will txt REG 14,2 100091 11993070 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.context.support.jar |
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| 186 | java 207 will txt REG 14,2 388716 11993122 /Users/will/Documents/workspace/Omero/dist/lib/server/quartz.jar |
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| 187 | java 207 will txt REG 14,2 70882 11993091 /Users/will/Documents/workspace/Omero/dist/lib/server/rendering.jar |
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| 188 | java 207 will txt REG 14,2 38099 11993101 /Users/will/Documents/workspace/Omero/dist/lib/server/romio.jar |
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| 189 | java 207 will txt REG 14,2 768246 11993110 /Users/will/Documents/workspace/Omero/dist/lib/server/server.jar |
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| 190 | java 207 will txt REG 14,2 242753 11993067 /Users/will/Documents/workspace/Omero/dist/lib/server/spring-ldap.jar |
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| 191 | java 207 will txt REG 14,2 160358 11993081 /Users/will/Documents/workspace/Omero/dist/lib/server/spring-security-config.jar |
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| 192 | java 207 will txt REG 14,2 305489 11993127 /Users/will/Documents/workspace/Omero/dist/lib/server/spring-security-core.jar |
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| 193 | java 207 will txt REG 14,2 84179 11993066 /Users/will/Documents/workspace/Omero/dist/lib/server/spring-security-ldap.jar |
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| 194 | java 207 will txt REG 14,2 1010675 11993109 /Users/will/Documents/workspace/Omero/dist/lib/server/xercesImpl.jar |
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| 195 | java 207 will txt REG 14,2 194205 11993112 /Users/will/Documents/workspace/Omero/dist/lib/server/xml-apis.jar |
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| 196 | java 207 will txt REG 14,2 217936 11191530 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libnet.jnilib |
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| 197 | java 207 will txt REG 14,2 118368 11191531 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libnio.jnilib |
|---|
| 198 | java 207 will txt REG 14,2 11616256 11193923 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/classes.jsa |
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| 199 | java 207 will txt REG 14,2 1059792 473858 /usr/lib/dyld |
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| 200 | java 207 will txt REG 14,2 146624512 11180383 /private/var/db/dyld/dyld_shared_cache_i386 |
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| 201 | java 207 will 0u CHR 3,2 0t0 72590724 /dev/null |
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| 202 | java 207 will 1w REG 14,2 0 11995061 /Users/will/Documents/workspace/Omero/dist/var/log/master.out |
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| 203 | java 207 will 2w REG 14,2 151 11995062 /Users/will/Documents/workspace/Omero/dist/var/log/master.err |
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| 204 | java 207 will 3r CHR 8,0 0t0 72916740 /dev/random |
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| 205 | java 207 will 4r CHR 8,1 0t276 72916612 /dev/urandom |
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| 206 | java 207 will 5w REG 14,2 41149 11995078 /Users/will/Documents/workspace/Omero/dist/var/log/Blitz-0.log |
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| 207 | java 207 will 7u IPv6 0x443a664 0t0 TCP localhost:49214->localhost:49213 (TIME_WAIT) |
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| 208 | java 207 will 8r REG 14,2 14320 11994112 /OMERO/FullText/_22v.cfs |
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| 209 | java 207 will 9r REG 14,2 21507 11994096 /OMERO/FullText/_22u.cfs |
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| 210 | java 207 will 10r REG 14,2 22151 11994070 /OMERO/FullText/_22t.cfs |
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| 211 | java 207 will 11r REG 14,2 1370 11994040 /OMERO/FullText/_22s.cfs |
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| 212 | java 207 will 12r REG 14,2 1370 11994027 /OMERO/FullText/_22r.cfs |
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| 213 | java 207 will 13r REG 14,2 998 11994014 /OMERO/FullText/_22q.cfs |
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| 214 | java 207 will 14r REG 14,2 2493 11994002 /OMERO/FullText/_22p.cfs |
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| 215 | java 207 will 15r REG 14,2 1370 11993990 /OMERO/FullText/_22o.cfs |
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| 216 | java 207 will 16r REG 14,2 1370 11993977 /OMERO/FullText/_22n.cfs |
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| 217 | java 207 will 17r REG 14,2 998 11993964 /OMERO/FullText/_22m.cfs |
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| 218 | java 207 will 18r REG 14,2 1370 11993952 /OMERO/FullText/_22l.cfs |
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| 219 | java 207 will 19r REG 14,2 1289 11993940 /OMERO/FullText/_22k.cfs |
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| 220 | java 207 will 20r REG 14,2 1363 11993908 /OMERO/FullText/_22j.cfs |
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| 221 | java 207 will 21r REG 14,2 998 11993886 /OMERO/FullText/_22i.cfs |
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| 222 | java 207 will 22r REG 14,2 1312 11993874 /OMERO/FullText/_22h.cfs |
|---|
| 223 | java 207 will 23r REG 14,2 1294 11993862 /OMERO/FullText/_22g.cfs |
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| 224 | java 207 will 24r REG 14,2 1141 11945986 /OMERO/FullText/_22f.cfs |
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| 225 | java 207 will 25r REG 14,2 1141 11945743 /OMERO/FullText/_22e.cfs |
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| 226 | java 207 will 26r REG 14,2 1141 11945731 /OMERO/FullText/_22d.cfs |
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| 227 | java 207 will 27r REG 14,2 1141 11945719 /OMERO/FullText/_22c.cfs |
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| 228 | java 207 will 28r REG 14,2 1487207 11945706 /OMERO/FullText/_22b.cfs |
|---|
| 229 | java 207 will 30u IPv6 0x6589e4c 0t0 TCP *:49236 (LISTEN) |
|---|
| 230 | java 207 will 31u IPv6 0x6589be8 0t0 TCP [::127.0.0.1]:49233 (LISTEN) |
|---|
| 231 | java 207 will 32 PIPE 0x5c620cc 16384 |
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| 232 | java 207 will 33 PIPE 0x5c62068 16384 |
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| 233 | java 207 will 34u CHR 3,2 0t0 72590724 /dev/null |
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| 234 | java 207 will 35 PIPE 0x5c62004 16384 |
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| 235 | java 207 will 36 PIPE 0x5c61fa0 16384 |
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| 236 | java 207 will 37u KQUEUE count=0, state=0x2 |
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| 237 | java 207 will 39 PIPE 0x5c61f3c 16384 |
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| 238 | java 207 will 40 PIPE 0x5c61ed8 16384 |
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| 239 | java 207 will 41 PIPE 0x5c61e74 16384 |
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| 240 | java 207 will 42 PIPE 0x5c61e10 16384 |
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| 241 | java 207 will 43u KQUEUE count=0, state=0x2 |
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| 242 | java 207 will 44 PIPE 0x5c61dac 16384 |
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| 243 | java 207 will 45 PIPE 0x5c61d48 16384 |
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| 244 | java 207 will 46 PIPE 0x5c61ce4 16384 |
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| 245 | java 207 will 47 PIPE 0x5c61c80 16384 |
|---|
| 246 | java 207 will 48u KQUEUE count=0, state=0x2 |
|---|
| 247 | java 207 will 52u IPv6 0x6588ff4 0t0 TCP [::10.12.1.83]:49236->[::10.12.1.83]:49239 (ESTABLISHED) |
|---|
| 248 | java 207 will 53u IPv6 0x6588d90 0t0 TCP [::10.12.1.83]:49236->[::10.12.1.83]:49240 (ESTABLISHED) |
|---|
| 249 | java 207 will 54 PIPE 0x5c63bc0 16384 |
|---|
| 250 | java 207 will 55r REG 14,2 17590 11993913 /Users/will/Documents/workspace/Omero/dist/lib/scripts/EMAN2/Run_Spider_Procedure.py |
|---|
| 251 | java 207 will 59u REG 14,2 0 11993790 /Users/will/Documents/workspace/Omero/dist/lib/scripts/.omero/repository/1fbdc711-4df4-40f2-be42-51e3a974de59/repo_uuid |
|---|
| 252 | java 207 will 60u REG 14,2 30 11993791 /Users/will/Documents/workspace/Omero/dist/lib/scripts/.omero/repository/1fbdc711-4df4-40f2-be42-51e3a974de59/.lock |
|---|
| 253 | java 207 will 61u REG 14,2 38 11471818 /OMERO/.omero/repository/1fbdc711-4df4-40f2-be42-51e3a974de59/repo_uuid |
|---|
| 254 | java 207 will 62u REG 14,2 30 11471819 /OMERO/.omero/repository/1fbdc711-4df4-40f2-be42-51e3a974de59/.lock |
|---|
| 255 | wjm:scripts will$ /usr/sbin/lsof -p 210 |
|---|
| 256 | COMMAND PID USER FD TYPE DEVICE SIZE/OFF NODE NAME |
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| 257 | java 210 will cwd DIR 14,2 306 11954193 /Users/will/Documents/workspace/Omero/dist |
|---|
| 258 | java 210 will txt REG 14,2 197232 11190927 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/bin/java |
|---|
| 259 | java 210 will txt REG 14,2 285552 11192782 /System/Library/Frameworks/JavaVM.framework/Versions/A/JavaVM |
|---|
| 260 | java 210 will txt REG 14,2 32768 11995075 /private/var/folders/mk/mkOc3rWtEp8VZpBVn5VFpE+++TI/-Tmp-/hsperfdata_will/210 |
|---|
| 261 | java 210 will txt REG 14,2 159264 11191535 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libverify.dylib |
|---|
| 262 | java 210 will txt REG 14,2 331328 11192446 /System/Library/Frameworks/JavaVM.framework/Versions/A/Frameworks/JavaNativeFoundation.framework/Versions/A/JavaNativeFoundation |
|---|
| 263 | java 210 will txt REG 14,2 555376 11191521 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libjava.jnilib |
|---|
| 264 | java 210 will txt REG 14,2 227424 11191536 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libzip.jnilib |
|---|
| 265 | java 210 will txt REG 14,2 336884 11190888 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Classes/ui.jar |
|---|
| 266 | java 210 will txt REG 14,2 889086 11190887 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Classes/laf.jar |
|---|
| 267 | java 210 will txt REG 14,2 15230480 11190244 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libclient.dylib |
|---|
| 268 | java 210 will txt REG 14,2 280148 11190886 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Classes/jsse.jar |
|---|
| 269 | java 210 will txt REG 14,2 82642 11190884 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Classes/jce.jar |
|---|
| 270 | java 210 will txt REG 14,2 4668919 11190881 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Classes/charsets.jar |
|---|
| 271 | java 210 will txt REG 14,2 96242 11993133 /Users/will/Documents/workspace/Omero/dist/lib/server/perf4j.jar |
|---|
| 272 | java 210 will txt REG 14,2 23445 11993090 /Users/will/Documents/workspace/Omero/dist/lib/server/slf4j-api.jar |
|---|
| 273 | java 210 will txt REG 14,2 24590 2151834 /Library/Java/Extensions/CsInline.jar |
|---|
| 274 | java 210 will txt REG 14,2 22667289 11190882 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Classes/classes.jar |
|---|
| 275 | java 210 will txt REG 14,2 13946012 11993189 /Users/will/Documents/workspace/Omero/dist/lib/server/blitz.jar |
|---|
| 276 | java 210 will txt REG 14,2 6500500 2151832 /Library/Java/Extensions/calculator.jar |
|---|
| 277 | java 210 will txt REG 14,2 9679 11993111 /Users/will/Documents/workspace/Omero/dist/lib/server/slf4j-log4j12.jar |
|---|
| 278 | java 210 will txt REG 14,2 67385 2151833 /Library/Java/Extensions/ChimePro.jar |
|---|
| 279 | java 210 will txt REG 14,2 761342 2151835 /Library/Java/Extensions/dbb_client.jar |
|---|
| 280 | java 210 will txt REG 14,2 2424933 2151836 /Library/Java/Extensions/dbb_helps.jar |
|---|
| 281 | java 210 will txt REG 14,2 130045 2151838 /Library/Java/Extensions/dbb_images.jar |
|---|
| 282 | java 210 will txt REG 14,2 657746 2151839 /Library/Java/Extensions/editor.jar |
|---|
| 283 | java 210 will txt REG 14,2 618824 2151840 /Library/Java/Extensions/editor_help.jar |
|---|
| 284 | java 210 will txt REG 14,2 68860 2151841 /Library/Java/Extensions/editor_legend.jar |
|---|
| 285 | java 210 will txt REG 14,2 83183 2151842 /Library/Java/Extensions/editor_templates.jar |
|---|
| 286 | java 210 will txt REG 14,2 247647 2151843 /Library/Java/Extensions/extlibs.jar |
|---|
| 287 | java 210 will txt REG 14,2 718824 2151844 /Library/Java/Extensions/mdli_mt.jar |
|---|
| 288 | java 210 will txt REG 14,2 6470 11190253 /System/Library/Java/Extensions/AppleScriptEngine.jar |
|---|
| 289 | java 210 will txt REG 14,2 127216 443158 /System/Library/Java/Extensions/CoreAudio.jar |
|---|
| 290 | java 210 will txt REG 14,2 17045 443159 /System/Library/Java/Extensions/dns_sd.jar |
|---|
| 291 | java 210 will txt REG 14,2 1245588 443160 /System/Library/Java/Extensions/j3daudio.jar |
|---|
| 292 | java 210 will txt REG 14,2 1340102 443161 /System/Library/Java/Extensions/j3dcore.jar |
|---|
| 293 | java 210 will txt REG 14,2 789164 443162 /System/Library/Java/Extensions/j3dutils.jar |
|---|
| 294 | java 210 will txt REG 14,2 328952 443163 /System/Library/Java/Extensions/jai_codec.jar |
|---|
| 295 | java 210 will txt REG 14,2 1893836 443164 /System/Library/Java/Extensions/jai_core.jar |
|---|
| 296 | java 210 will txt REG 14,2 41239 443172 /System/Library/Java/Extensions/mlibwrapper_jai.jar |
|---|
| 297 | java 210 will txt REG 14,2 12837 11190378 /System/Library/Java/Extensions/MRJToolkit.jar |
|---|
| 298 | java 210 will txt REG 14,2 938686 6361965 /System/Library/Java/Extensions/QTJava.zip |
|---|
| 299 | java 210 will txt REG 14,2 153874 443175 /System/Library/Java/Extensions/vecmath.jar |
|---|
| 300 | java 210 will txt REG 14,2 4615 11993138 /Users/will/Documents/workspace/Omero/dist/lib/server/com.springsource.org.aopalliance.jar |
|---|
| 301 | java 210 will txt REG 14,2 44334 11190965 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/ext/apple_provider.jar |
|---|
| 302 | java 210 will txt REG 14,2 8204 11190966 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/ext/dnsns.jar |
|---|
| 303 | java 210 will txt REG 14,2 449774 11190967 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/ext/localedata.jar |
|---|
| 304 | java 210 will txt REG 14,2 158419 11190968 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/ext/sunjce_provider.jar |
|---|
| 305 | java 210 will txt REG 14,2 404083 11190969 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Home/lib/ext/sunpkcs11.jar |
|---|
| 306 | java 210 will txt REG 14,2 63167 11993085 /Users/will/Documents/workspace/Omero/dist/lib/server/FontBox.jar |
|---|
| 307 | java 210 will txt REG 14,2 3321771 11993102 /Users/will/Documents/workspace/Omero/dist/lib/server/PDFBox.jar |
|---|
| 308 | java 210 will txt REG 14,2 56290 11993136 /Users/will/Documents/workspace/Omero/dist/lib/server/activation.jar |
|---|
| 309 | java 210 will txt REG 14,2 443432 11993100 /Users/will/Documents/workspace/Omero/dist/lib/server/antlr.jar |
|---|
| 310 | java 210 will txt REG 14,2 16757 11993118 /Users/will/Documents/workspace/Omero/dist/lib/server/asm-attrs.jar |
|---|
| 311 | java 210 will txt REG 14,2 26361 11993113 /Users/will/Documents/workspace/Omero/dist/lib/server/asm.jar |
|---|
| 312 | java 210 will txt REG 14,2 322386 11993132 /Users/will/Documents/workspace/Omero/dist/lib/server/backport-util-concurrent.jar |
|---|
| 313 | java 210 will txt REG 14,2 73710 11993077 /Users/will/Documents/workspace/Omero/dist/lib/server/batik-parser.jar |
|---|
| 314 | java 210 will txt REG 14,2 128334 11993137 /Users/will/Documents/workspace/Omero/dist/lib/server/batik-util.jar |
|---|
| 315 | java 210 will txt REG 14,2 5236 11993125 /Users/will/Documents/workspace/Omero/dist/lib/server/batik.jar |
|---|
| 316 | java 210 will txt REG 14,2 1438847 11993104 /Users/will/Documents/workspace/Omero/dist/lib/server/bio-formats.jar |
|---|
| 317 | java 210 will txt REG 14,2 1108473 11993093 /Users/will/Documents/workspace/Omero/dist/lib/server/jai_imageio.jar |
|---|
| 318 | java 210 will txt REG 14,2 84992 11993116 /Users/will/Documents/workspace/Omero/dist/lib/server/loci-common.jar |
|---|
| 319 | java 210 will txt REG 14,2 82587 11993075 /Users/will/Documents/workspace/Omero/dist/lib/server/mdbtools-java.jar |
|---|
| 320 | java 210 will txt REG 14,2 395618 11993071 /Users/will/Documents/workspace/Omero/dist/lib/server/ome-xml.jar |
|---|
| 321 | java 210 will txt REG 14,2 910347 11993141 /Users/will/Documents/workspace/Omero/dist/lib/server/poi-loci.jar |
|---|
| 322 | java 210 will txt REG 14,2 60841 11993088 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-logging.jar |
|---|
| 323 | java 210 will txt REG 14,2 257062 11993082 /Users/will/Documents/workspace/Omero/dist/lib/server/btm.jar |
|---|
| 324 | java 210 will txt REG 14,2 471784 11993069 /Users/will/Documents/workspace/Omero/dist/lib/server/bufr.jar |
|---|
| 325 | java 210 will txt REG 14,2 278682 11993083 /Users/will/Documents/workspace/Omero/dist/lib/server/cglib.jar |
|---|
| 326 | java 210 will txt REG 14,2 83148 11993140 /Users/will/Documents/workspace/Omero/dist/lib/server/common.jar |
|---|
| 327 | java 210 will txt REG 14,2 231320 11993080 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-beanutils.jar |
|---|
| 328 | java 210 will txt REG 14,2 571259 11993074 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-collections.jar |
|---|
| 329 | java 210 will txt REG 14,2 313898 11993092 /Users/will/Documents/workspace/Omero/dist/lib/server/dom4j.jar |
|---|
| 330 | java 210 will txt REG 14,2 56262 11993063 /Users/will/Documents/workspace/Omero/dist/lib/server/dsl.jar |
|---|
| 331 | java 210 will txt REG 14,2 150195 11993068 /Users/will/Documents/workspace/Omero/dist/lib/server/jamon.jar |
|---|
| 332 | java 210 will txt REG 14,2 4464 11993073 /Users/will/Documents/workspace/Omero/dist/lib/server/jul-to-slf4j.jar |
|---|
| 333 | java 210 will txt REG 14,2 351101 11993108 /Users/will/Documents/workspace/Omero/dist/lib/server/log4j.jar |
|---|
| 334 | java 210 will txt REG 14,2 320296 11993084 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.aop.jar |
|---|
| 335 | java 210 will txt REG 14,2 355598 11993065 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.core.jar |
|---|
| 336 | java 210 will txt REG 14,2 778531 11992697 /Users/will/Documents/workspace/Omero/dist/lib/server/services.jar |
|---|
| 337 | java 210 will txt REG 14,2 100884 11993072 /Users/will/Documents/workspace/Omero/dist/lib/server/hibernate-jpa-2.0-api.jar |
|---|
| 338 | java 210 will txt REG 14,2 313784 11993143 /Users/will/Documents/workspace/Omero/dist/lib/server/hibernate-search.jar |
|---|
| 339 | java 210 will txt REG 14,2 62574 11993086 /Users/will/Documents/workspace/Omero/dist/lib/server/hibernate-validator.jar |
|---|
| 340 | java 210 will txt REG 14,2 3893179 11993098 /Users/will/Documents/workspace/Omero/dist/lib/server/hibernate.jar |
|---|
| 341 | java 210 will txt REG 14,2 597476 11993087 /Users/will/Documents/workspace/Omero/dist/lib/server/javassist.jar |
|---|
| 342 | java 210 will txt REG 14,2 822794 11993142 /Users/will/Documents/workspace/Omero/dist/lib/server/lucene-core.jar |
|---|
| 343 | java 210 will txt REG 14,2 91152 11993103 /Users/will/Documents/workspace/Omero/dist/lib/server/lucene-highlighter.jar |
|---|
| 344 | java 210 will txt REG 14,2 18505 11993106 /Users/will/Documents/workspace/Omero/dist/lib/server/lucene-spellchecker.jar |
|---|
| 345 | java 210 will txt REG 14,2 1005276 11993096 /Users/will/Documents/workspace/Omero/dist/lib/server/model-psql.jar |
|---|
| 346 | java 210 will txt REG 14,2 53088 11993079 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.asm.jar |
|---|
| 347 | java 210 will txt REG 14,2 547837 11993078 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.beans.jar |
|---|
| 348 | java 210 will txt REG 14,2 656978 11993095 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.context.jar |
|---|
| 349 | java 210 will txt REG 14,2 156137 11993131 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.expression.jar |
|---|
| 350 | java 210 will txt REG 14,2 377647 11993094 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.jdbc.jar |
|---|
| 351 | java 210 will txt REG 14,2 331286 11993120 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.orm.jar |
|---|
| 352 | java 210 will txt REG 14,2 228765 11993121 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.transaction.jar |
|---|
| 353 | java 210 will txt REG 14,2 448141 11993099 /Users/will/Documents/workspace/Omero/dist/lib/server/postgresql.jar |
|---|
| 354 | java 210 will txt REG 14,2 46725 11993128 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-codec.jar |
|---|
| 355 | java 210 will txt REG 14,2 305001 11993076 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-httpclient.jar |
|---|
| 356 | java 210 will txt REG 14,2 109043 11993115 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-io.jar |
|---|
| 357 | java 210 will txt REG 14,2 207723 11993139 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-lang.jar |
|---|
| 358 | java 210 will txt REG 14,2 42492 11993134 /Users/will/Documents/workspace/Omero/dist/lib/server/commons-pool.jar |
|---|
| 359 | java 210 will txt REG 14,2 263854 11993119 /Users/will/Documents/workspace/Omero/dist/lib/server/ehcache.jar |
|---|
| 360 | java 210 will txt REG 14,2 13468 11993089 /Users/will/Documents/workspace/Omero/dist/lib/server/geronimo-spec-jta.jar |
|---|
| 361 | java 210 will txt REG 14,2 312184 11993129 /Users/will/Documents/workspace/Omero/dist/lib/server/grib.jar |
|---|
| 362 | java 210 will txt REG 14,2 237213 11993107 /Users/will/Documents/workspace/Omero/dist/lib/server/ice-db.jar |
|---|
| 363 | java 210 will txt REG 14,2 1591295 11993064 /Users/will/Documents/workspace/Omero/dist/lib/server/ice.jar |
|---|
| 364 | java 210 will txt REG 14,2 33687 11993135 /Users/will/Documents/workspace/Omero/dist/lib/server/ini4j.jar |
|---|
| 365 | java 210 will txt REG 14,2 56709 11993097 /Users/will/Documents/workspace/Omero/dist/lib/server/java-getopt.jar |
|---|
| 366 | java 210 will txt REG 14,2 8277 11993126 /Users/will/Documents/workspace/Omero/dist/lib/server/jsr107cache.jar |
|---|
| 367 | java 210 will txt REG 14,2 599212 11993114 /Users/will/Documents/workspace/Omero/dist/lib/server/jts.jar |
|---|
| 368 | java 210 will txt REG 14,2 371264 11993117 /Users/will/Documents/workspace/Omero/dist/lib/server/mail.jar |
|---|
| 369 | java 210 will txt REG 14,2 2554323 11993130 /Users/will/Documents/workspace/Omero/dist/lib/server/netcdf.jar |
|---|
| 370 | java 210 will txt REG 14,2 425779 11993105 /Users/will/Documents/workspace/Omero/dist/lib/server/ome-java.jar |
|---|
| 371 | java 210 will txt REG 14,2 100091 11993070 /Users/will/Documents/workspace/Omero/dist/lib/server/org.springframework.context.support.jar |
|---|
| 372 | java 210 will txt REG 14,2 388716 11993122 /Users/will/Documents/workspace/Omero/dist/lib/server/quartz.jar |
|---|
| 373 | java 210 will txt REG 14,2 70882 11993091 /Users/will/Documents/workspace/Omero/dist/lib/server/rendering.jar |
|---|
| 374 | java 210 will txt REG 14,2 38099 11993101 /Users/will/Documents/workspace/Omero/dist/lib/server/romio.jar |
|---|
| 375 | java 210 will txt REG 14,2 768246 11993110 /Users/will/Documents/workspace/Omero/dist/lib/server/server.jar |
|---|
| 376 | java 210 will txt REG 14,2 242753 11993067 /Users/will/Documents/workspace/Omero/dist/lib/server/spring-ldap.jar |
|---|
| 377 | java 210 will txt REG 14,2 160358 11993081 /Users/will/Documents/workspace/Omero/dist/lib/server/spring-security-config.jar |
|---|
| 378 | java 210 will txt REG 14,2 305489 11993127 /Users/will/Documents/workspace/Omero/dist/lib/server/spring-security-core.jar |
|---|
| 379 | java 210 will txt REG 14,2 84179 11993066 /Users/will/Documents/workspace/Omero/dist/lib/server/spring-security-ldap.jar |
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| 380 | java 210 will txt REG 14,2 1010675 11993109 /Users/will/Documents/workspace/Omero/dist/lib/server/xercesImpl.jar |
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| 381 | java 210 will txt REG 14,2 194205 11993112 /Users/will/Documents/workspace/Omero/dist/lib/server/xml-apis.jar |
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| 382 | java 210 will txt REG 14,2 110784 11191529 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libmanagement.jnilib |
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| 383 | java 210 will txt REG 14,2 118368 11191531 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libnio.jnilib |
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| 384 | java 210 will txt REG 14,2 217936 11191530 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/libnet.jnilib |
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| 385 | java 210 will txt REG 14,2 11616256 11193923 /System/Library/Frameworks/JavaVM.framework/Versions/1.5.0/Libraries/classes.jsa |
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| 386 | java 210 will txt REG 14,2 1059792 473858 /usr/lib/dyld |
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| 387 | java 210 will txt REG 14,2 146624512 11180383 /private/var/db/dyld/dyld_shared_cache_i386 |
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| 388 | java 210 will 0u CHR 3,2 0t0 72590724 /dev/null |
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| 389 | java 210 will 1w REG 14,2 0 11995061 /Users/will/Documents/workspace/Omero/dist/var/log/master.out |
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| 390 | java 210 will 2w REG 14,2 151 11995062 /Users/will/Documents/workspace/Omero/dist/var/log/master.err |
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| 391 | java 210 will 3r CHR 8,0 0t0 72916740 /dev/random |
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| 392 | java 210 will 4r CHR 8,1 0t116 72916612 /dev/urandom |
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| 393 | java 210 will 5w REG 14,2 2941 11995079 /Users/will/Documents/workspace/Omero/dist/var/log/Indexer-0.log |
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| 394 | java 210 will 6u IPv6 0x443a400 0t0 TCP [::127.0.0.1]:49212->[::127.0.0.1]:postgresql (ESTABLISHED) |
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| 395 | java 210 will 7u IPv6 0x443a8c8 0t0 TCP localhost:49211->localhost:49210 (TIME_WAIT) |
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| 396 | java 210 will 8r REG 14,2 14320 11994112 /OMERO/FullText/_22v.cfs |
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| 397 | java 210 will 9r REG 14,2 21507 11994096 /OMERO/FullText/_22u.cfs |
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| 398 | java 210 will 10r REG 14,2 22151 11994070 /OMERO/FullText/_22t.cfs |
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| 399 | java 210 will 11r REG 14,2 1370 11994040 /OMERO/FullText/_22s.cfs |
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| 400 | java 210 will 12r REG 14,2 1370 11994027 /OMERO/FullText/_22r.cfs |
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| 401 | java 210 will 13r REG 14,2 998 11994014 /OMERO/FullText/_22q.cfs |
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| 402 | java 210 will 14r REG 14,2 2493 11994002 /OMERO/FullText/_22p.cfs |
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| 403 | java 210 will 15r REG 14,2 1370 11993990 /OMERO/FullText/_22o.cfs |
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| 404 | java 210 will 16r REG 14,2 1370 11993977 /OMERO/FullText/_22n.cfs |
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| 405 | java 210 will 17r REG 14,2 998 11993964 /OMERO/FullText/_22m.cfs |
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| 406 | java 210 will 18r REG 14,2 1370 11993952 /OMERO/FullText/_22l.cfs |
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| 407 | java 210 will 19r REG 14,2 1289 11993940 /OMERO/FullText/_22k.cfs |
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| 408 | java 210 will 20r REG 14,2 1363 11993908 /OMERO/FullText/_22j.cfs |
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| 409 | java 210 will 21r REG 14,2 998 11993886 /OMERO/FullText/_22i.cfs |
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| 410 | java 210 will 22r REG 14,2 1312 11993874 /OMERO/FullText/_22h.cfs |
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| 411 | java 210 will 23r REG 14,2 1294 11993862 /OMERO/FullText/_22g.cfs |
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| 412 | java 210 will 24r REG 14,2 1141 11945986 /OMERO/FullText/_22f.cfs |
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| 413 | java 210 will 25r REG 14,2 1141 11945743 /OMERO/FullText/_22e.cfs |
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| 414 | java 210 will 26r REG 14,2 1141 11945731 /OMERO/FullText/_22d.cfs |
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| 415 | java 210 will 27r REG 14,2 1141 11945719 /OMERO/FullText/_22c.cfs |
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| 416 | java 210 will 28r REG 14,2 1487207 11945706 /OMERO/FullText/_22b.cfs |
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| 417 | java 210 will 29u IPv6 0x443a19c 0t0 TCP [::127.0.0.1]:49225 (LISTEN) |
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| 418 | java 210 will 30 PIPE 0x5c6257c 16384 |
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| 419 | java 210 will 31 PIPE 0x5c62518 16384 |
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| 420 | java 210 will 32u CHR 3,2 0t0 72590724 /dev/null |
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| 421 | java 210 will 33 PIPE 0x5c624b4 16384 |
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| 422 | java 210 will 34 PIPE 0x5c62450 16384 |
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| 423 | java 210 will 35u KQUEUE count=0, state=0x2 |
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| 424 | java 210 will 37 PIPE 0x5c623ec 16384 |
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| 425 | java 210 will 38 PIPE 0x5c62388 16384 |
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| 426 | java 210 will 39 PIPE 0x5c62324 16384 |
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| 427 | java 210 will 40 PIPE 0x5c622c0 16384 |
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| 428 | java 210 will 41u KQUEUE count=0, state=0x2 |
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| 429 | java 210 will 42 PIPE 0x5c6225c 16384 |
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| 430 | java 210 will 43 PIPE 0x5c621f8 16384 |
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| 431 | java 210 will 44 PIPE 0x5c62194 16384 |
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| 432 | java 210 will 45 PIPE 0x5c62130 16384 |
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| 433 | java 210 will 46u KQUEUE count=0, state=0x2 |
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| 434 | java 210 will 48u IPv6 0x443980c 0t0 TCP *:49228 (LISTEN) |
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| 435 | java 210 will 57 PIPE 0x5c63968 16384 |
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| 436 | |
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| 437 | wjm:scripts will$ omero admin diagnostics |
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| 438 | |
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| 439 | ================================================================================ |
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| 440 | OMERO Diagnostics Beta-4.2.0-DEV |
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| 441 | ================================================================================ |
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| 442 | |
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| 443 | Commands: java -version 1.5.0 (/usr/bin/java) |
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| 444 | Commands: python -V 2.5.1 (/usr/bin/python) |
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| 445 | Commands: icegridnode --version 3.3.1 (/opt/Ice-3.3.1/bin/icegridnode) |
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| 446 | Commands: icegridadmin --version 3.3.1 (/opt/Ice-3.3.1/bin/icegridadmin) |
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| 447 | Commands: psql --version 8.3.8 (/Library/PostgreSQL/8.3/bin/psql) |
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| 448 | |
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| 449 | Server: icegridnode running |
|---|
| 450 | Server: Blitz-0 active (pid = 207, enabled) |
|---|
| 451 | Server: DropBox active (pid = 208, enabled) |
|---|
| 452 | Server: FileServer active (pid = 209, enabled) |
|---|
| 453 | Server: Indexer-0 active (pid = 210, enabled) |
|---|
| 454 | Server: MonitorServer active (pid = 211, enabled) |
|---|
| 455 | Server: OMERO.Glacier2 active (pid = 212, enabled) |
|---|
| 456 | Server: OMERO.IceStorm active (pid = 213, enabled) |
|---|
| 457 | Server: Processor-0 active (pid = 214, enabled) |
|---|
| 458 | Server: Repository-1 error: node `repo' couldn't be reached: |
|---|
| 459 | the node is not active |
|---|
| 460 | Server: Tables-0 inactive (disabled) |
|---|
| 461 | Server: TestDropBox inactive (enabled) |
|---|
| 462 | Server: Web inactive (enabled) |
|---|
| 463 | |
|---|
| 464 | Log dir: /Users/will/Documents/workspace/Omero/dist/var/log exists |
|---|
| 465 | |
|---|
| 466 | Log files: Blitz-0.log 41.0 KB errors=1 warnings=9 |
|---|
| 467 | Log files: DropBox.log 1.0 KB errors=1 warnings=0 |
|---|
| 468 | Log files: FileServer.log 0.0 KB |
|---|
| 469 | Log files: Indexer-0.log 2.0 KB errors=0 warnings=9 |
|---|
| 470 | Log files: MonitorServer.log 1.0 KB errors=1 warnings=0 |
|---|
| 471 | Log files: OMEROweb.log n/a |
|---|
| 472 | Log files: Processor-0.log 0.0 KB |
|---|
| 473 | Log files: Tables-0.log n/a |
|---|
| 474 | Log files: TestDropBox.log n/a |
|---|
| 475 | Log files: master.err 0.0 KB |
|---|
| 476 | Log files: master.out 0.0 KB |
|---|
| 477 | Log files: Total size 0.05 MB |
|---|
| 478 | |
|---|
| 479 | Parsing Blitz-0.log:[line:17] => Server restarted <= |
|---|
| 480 | |
|---|
| 481 | Environment:OMERO_HOME=(unset) |
|---|
| 482 | Environment:OMERO_NODE=(unset) |
|---|
| 483 | Environment:OMERO_MASTER=(unset) |
|---|
| 484 | Environment:PATH=/Applications/EMAN2//EMAN2.cvs/bin:/Applications/EMAN2//EMAN2.cvs/sparx/bin:/Applications/IMOD/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/bin:/usr/X11/bin:/Library/PostgreSQL/8.3/bin/:/Applications/Chimera.app/Contents/Resources/bin/:/Users/will/Documents/workspace/Omero/dist/bin/:/opt/Ice-3.3.1/bin:/usr/local/HDF5/bin:/Applications/spiderweb/spider/bin/:/Applications/spiderweb/web/bin/ |
|---|
| 485 | Environment:ICE_HOME=/opt/Ice-3.3.1 |
|---|
| 486 | Environment:LD_LIBRARY_PATH=/usr/local/HDF5/lib:/opt/SZIP/lib |
|---|
| 487 | Environment:DYLD_LIBRARY_PATH=/Applications/IMOD/lib::/opt/Ice-3.3.1/lib:/opt/hdf/lib |
|---|
| 488 | wjm:scripts will$ |
|---|
