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Ticket #6397: sample-third-party.xml

File sample-third-party.xml, 8.1 KB (added by ajpatterson, 13 years ago)
Line 
1<?xml version="1.0" encoding="UTF-8"?>
2<!--
3        #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4        #
5        # Copyright (C) 2011 Open Microscopy Environment
6        #       Massachusetts Institute of Technology,
7        #       National Institutes of Health,
8        #       University of Dundee,
9        #       University of Wisconsin at Madison
10        #
11        #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
12-->
13<!--
14        #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
15        # Written by: Andrew J Patterson
16        #~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
17-->
18<CustomTag xmlns="http://www.openmicroscopy.org/Schemas/SampleThirdParty/2011-06"
19        xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
20        xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/SampleThirdParty/2011-06 file:/Users/andrew/Work/ome/components/specification/InProgress/sample-third-party.xsd">
21        <xsi:annotation>
22                <xsi:documentation>
23                        Open Microscopy Environment
24                        OME Sample Third Party
25                        Author: Andrew J Patterson
26                        Copyright 2011 OME. All rights reserved.
27                </xsi:documentation>
28        </xsi:annotation>
29       
30        <Image xmlns="http://www.openmicroscopy.org/Schemas/OME/2011-06"
31                xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2011-06     http://www.openmicroscopy.org/Schemas/OME/2011-06/ome.xsd"
32                ID="Image:1">
33                <AcquiredDate>2010-02-23T12:51:30</AcquiredDate>
34                <Pixels ID="Pixels:1" DimensionOrder="XYZCT" Type="uint8" SizeX="1" SizeY="1" SizeZ="1"
35                        SizeT="1" SizeC="1">
36                        <MetadataOnly/>
37                </Pixels>
38        </Image>
39        <Arc xmlns="http://www.openmicroscopy.org/Schemas/OME/2011-06"
40                xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2011-06     http://www.openmicroscopy.org/Schemas/OME/2011-06/ome.xsd"
41                Type="Xe"
42        />
43        <LightSource xmlns="http://www.openmicroscopy.org/Schemas/OME/2011-06"
44                xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2011-06     http://www.openmicroscopy.org/Schemas/OME/2011-06/ome.xsd"
45                ID="LightSource:1"
46                >
47                <Laser Type="Dye" FrequencyMultiplication="2" LaserMedium="CoumarinC30"
48                        PockelCell="true" Pulse="Single" RepetitionRate="1.3" Tuneable="true"
49                        Wavelength="640">
50                        <Pump ID="LightSource:4"/>
51                </Laser>
52               
53        </LightSource>
54        <LightSource xmlns="http://www.openmicroscopy.org/Schemas/OME/2011-06"
55                xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2011-06     http://www.openmicroscopy.org/Schemas/OME/2011-06/ome.xsd"
56                ID="LightSource:2"
57                >
58                <Filament Type="Incandescent"/>
59        </LightSource>
60        <LightSource xmlns="http://www.openmicroscopy.org/Schemas/OME/2011-06"
61                xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2011-06     http://www.openmicroscopy.org/Schemas/OME/2011-06/ome.xsd"
62                ID="LightSource:3"
63                >
64                <Arc Type="Hg"/>
65        </LightSource>
66        <LightSource xmlns="http://www.openmicroscopy.org/Schemas/OME/2011-06"
67                xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2011-06     http://www.openmicroscopy.org/Schemas/OME/2011-06/ome.xsd"
68                ID="LightSource:4"
69                >
70                <LightEmittingDiode/>
71        </LightSource>
72        <Objective xmlns="http://www.openmicroscopy.org/Schemas/OME/2011-06"
73                xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2011-06     http://www.openmicroscopy.org/Schemas/OME/2011-06/ome.xsd"
74                ID="Objective:1" CalibratedMagnification="0.3" Correction="UV" Immersion="Air"
75                Iris="true" LensNA="1.3" NominalMagnification="2" WorkingDistance="2.3"
76                Manufacturer="OME-Sample" Model="Mk II" SerialNumber="sn-234567"/>     
77       
78        <Filter xmlns="http://www.openmicroscopy.org/Schemas/OME/2011-06"
79                xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2011-06     http://www.openmicroscopy.org/Schemas/OME/2011-06/ome.xsd"
80               
81                ID="Filter:1" Type="BandPass" FilterWheel="" LotNumber="794" Model="Mk II"
82                Manufacturer="OME-Sample" SerialNumber="sn-987654">
83                <TransmittanceRange CutIn="400" CutInTolerance="20" CutOut="600" CutOutTolerance="40" Transmittance="0.25"/>
84        </Filter>
85
86        <Plate xmlns="http://www.openmicroscopy.org/Schemas/OME/2011-06"
87                xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2011-06     http://www.openmicroscopy.org/Schemas/OME/2011-06/ome.xsd"
88               
89                ID="Plate:1" ColumnNamingConvention="letter" Columns="3" ExternalIdentifier=""
90                Name="" RowNamingConvention="number" Rows="5" Status="" WellOriginX="0.0" WellOriginY="0.0">
91                <Description>A plate description</Description>
92                <ScreenRef ID="Screen:1"/>
93                <Well ID="Well:1" Column="0" Row="0">
94                        <WellSample ID="WellSample:1" Index="1"/>
95                        <ReagentRef ID="Reagent:1"/>
96                </Well>
97                <Well ID="Well:2" Column="0" Row="1">
98                        <WellSample ID="WellSample:2" Index="2"/>
99                        <ReagentRef ID="Reagent:1"/>
100                </Well>
101                <!-- And then all the other Wells -->
102                <PlateAcquisition ID="PlateAcquisition:1"/>
103        </Plate>
104
105        <Screen xmlns="http://www.openmicroscopy.org/Schemas/OME/2011-06"
106                xsi:schemaLocation="http://www.openmicroscopy.org/Schemas/OME/2011-06     http://www.openmicroscopy.org/Schemas/OME/2011-06/ome.xsd"
107               
108                ID="Screen:1" ProtocolDescription="" ProtocolIdentifier="" ReagentSetDescription="Core Reagents"
109                ReagentSetIdentifier="" Name="" Type="">
110                <Description>A screen description</Description>
111                <Reagent ID="Reagent:1" Name="Reagent A" ReagentIdentifier="Rea:23456">
112                        <Description>A reagent description</Description>
113                </Reagent>
114                <PlateRef ID="Plate:1"/>
115        </Screen>
116       
117        <!-- Possible include objects
118       
119        <xsd:complexType name="FilterRef" >
120        <xsd:element name = "BinaryFile">
121        <xsd:element name = "BinData">
122        <xsd:element name = "External">
123        <xsd:element name="AnnotationRef">
124        <xsd:element name="Arc">
125        <xsd:element name="BooleanAnnotation">
126        <xsd:element name="Channel">
127        <xsd:element name="ChannelRef">
128        <xsd:element name="CommentAnnotation">
129        <xsd:element name="Contact">
130        <xsd:element name="Dataset">
131        <xsd:element name="DatasetRef">
132        <xsd:element name="Detector">
133        <xsd:element name="DetectorSettings">
134        <xsd:element name="Dichroic">
135        <xsd:element name="DichroicRef">
136        <xsd:element name="DoubleAnnotation">
137        <xsd:element name="Ellipse">
138        <xsd:element name="Experiment">
139        <xsd:element name="Experimenter">
140        <xsd:element name="ExperimenterRef">
141        <xsd:element name="ExperimentRef">
142        <xsd:element name="Filament">
143        <xsd:element name="FileAnnotation">
144        <xsd:element name="Filter">
145        <xsd:element name="FilterSet">
146        <xsd:element name="FilterSetRef">
147        <xsd:element name="Group">
148        <xsd:element name="GroupRef">
149        <xsd:element name="Image">
150        <xsd:element name="ImageRef">
151        <xsd:element name="ImagingEnvironment">
152        <xsd:element name="Instrument">
153        <xsd:element name="InstrumentRef">
154        <xsd:element name="Laser">
155        <xsd:element name="Leader">
156        <xsd:element name="LightEmittingDiode">
157        <xsd:element name="LightPath">
158        <xsd:element name="LightSource">
159        <xsd:element name="LightSourceSettings">
160        <xsd:element name="Line">
161        <xsd:element name="ListAnnotation">
162        <xsd:element name="LongAnnotation">
163        <xsd:element name="Mask">
164        <xsd:element name="MetadataOnly">
165        <xsd:element name="MicrobeamManipulation">
166        <xsd:element name="MicrobeamManipulationRef">
167        <xsd:element name="Microscope">
168        <xsd:element name="Objective">
169        <xsd:element name="ObjectiveSettings">
170        <xsd:element name="OME">
171        <xsd:element name="OTF">
172        <xsd:element name="OTFRef">
173        <xsd:element name="Path">
174        <xsd:element name="Pixels">
175        <xsd:element name="Plane">
176        <xsd:element name="Plate">
177        <xsd:element name="PlateAcquisition">
178        <xsd:element name="Point">
179        <xsd:element name="Polyline">
180        <xsd:element name="Project">
181        <xsd:element name="ProjectRef">
182        <xsd:element name="Pump">
183        <xsd:element name="Reagent">
184        <xsd:element name="ReagentRef">
185        <xsd:element name="Rectangle">
186        <xsd:element name="ROI">
187        <xsd:element name="ROIRef">
188        <xsd:element name="Screen">
189        <xsd:element name="Shape">
190        <xsd:element name="StageLabel">
191        <xsd:element name="StructuredAnnotations">
192        <xsd:element name="TagAnnotation">
193        <xsd:element name="TermAnnotation">
194        <xsd:element name="Text">
195        <xsd:element name="TiffData">
196        <xsd:element name="TimestampAnnotation">
197        <xsd:element name="TransmittanceRange">
198        <xsd:element name="Well">
199        <xsd:element name="WellSample">
200        <xsd:element name="WellSampleRef">
201        <xsd:element name="XMLAnnotation">
202        <xsd:simpleType name="Marker">
203        <xsd:simpleType name="ROIID">
204        <xsd:simpleType name="ShapeID">
205       
206        -->
207       
208</CustomTag>

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OME source code is available under the GNU General public license or through commercial license from Glencoe Software

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