Task #10287 (closed)
Opened 12 years ago
Closed 12 years ago
BUG: Error on display of .ndpi
Reported by: | pwalczysko | Owned by: | |
---|---|---|---|
Priority: | critical | Milestone: | 5.0.0-beta1 |
Component: | Import | Version: | n.a. |
Keywords: | FS | Cc: | fs@…, ux@…, |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | FS Demo 2 |
Description
Gretzky, build OMERO.insight-4.4.4-1196-a8163de-dirty-ice33-b153-mac.
Importing test_images_good/hamamatsu/david/2009-12-18 09.20.56.ndpi .
Import failed.
Ice.CommunicatorDestroyedException at IceInternal.Instance.objectAdapterFactory(Instance.java:122) at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:997) at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946) at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:593) at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:567) at ome.formats.importer.ImportLibrary.cleanupUpload(ImportLibrary.java:333) at ome.formats.importer.ImportLibrary.uploadFile(ImportLibrary.java:323) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:380) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6645) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6628) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1263) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6692) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6628) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1263) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:110) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Thread.java:680) Caused by: Ice.CommunicatorDestroyedException at IceInternal.Instance.objectAdapterFactory(Instance.java:122) at Ice.ObjectPrxHelperBase.createDelegate(ObjectPrxHelperBase.java:997) at Ice.ObjectPrxHelperBase.__getDelegate(ObjectPrxHelperBase.java:946) at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:593) at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:567) at ome.formats.importer.ImportLibrary.cleanupUpload(ImportLibrary.java:333) at ome.formats.importer.ImportLibrary.uploadFile(ImportLibrary.java:323) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:380) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImageNew(OMEROGateway.java:6645) ... 12 more
Change History (5)
comment:1 Changed 12 years ago by jmoore
comment:2 Changed 12 years ago by pwalczysko
Just found out that import of /Volumes/ome/data_repo/test_images_good/hamamatsu/david/2009-12-18 09.20.56.ndpi went fine on Gretzky. The viewing was not possible though - the tiles were replaced by horizontal lines in Inishgth. When viewing this image in Web, a stacktrace appears. After refreshing of the browser, Internal server error appears.
comment:3 Changed 12 years ago by pwalczysko
- Keywords import removed
- Milestone changed from OMERO-4.5 to OMERO-5
- Sprint changed from 2013-02-12 (5) to FS Demo 2
- Summary changed from BUG: Error on import of .ndpi to BUG: Error on display of .ndpi
comment:4 Changed 12 years ago by mlinkert
As mentioned in the meeting, if this PR wasn't in the build: https://github.com/openmicroscopy/bioformats/pull/159
then it's expected that .ndpi display will be wrong.
comment:5 Changed 12 years ago by jmoore
- Resolution set to duplicate
- Status changed from new to closed
Added to #10381 as a duplicate. If we decide that we need to handle the CommunicatorDestroyedException differently than the CommunicatorLostException we may want to re-open.
This points to your client losing its connection. Possibly related to gretzky hanging (OutOfMemory?).