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Task #12144 (new)

Opened 10 years ago

Last modified 10 years ago

Bug : newer .lif files fail to initialize — at Version 2

Reported by:	bramalingam	Owned by:	mlinkert
Priority:	major	Milestone:	Unscheduled
Component:	Bio-Formats	Version:	5.0.0
Keywords:	n.a.	Cc:	r.a.hoebe@…, e.mackay@…, astout@…, mendelsm@…, rebecca.richardson@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description (last modified by mlinkert)

Location.mapFile: embedded-stream.raw -> null

FILE_EXCEPTION: /ome/data_repo/from_Biozentrum_Basel/Charles/SP5/01-31hpi-Experiment.lif

loci.formats.FormatException: Invalid Memory Block: found magic bytes 0, expected 112

        at loci.formats.in.LIFReader.initFile(LIFReader.java:416)

        at loci.formats.FormatReader.setId(FormatReader.java:1319)

        at loci.formats.ImageReader.setId(ImageReader.java:757)

        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:573)

        at loci.formats.ChannelFiller.setId(ChannelFiller.java:263)

        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:573)

        at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:274)

        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:573)

        at loci.formats.Memoizer.setId(Memoizer.java:471)

        at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:573)

        at ome.formats.importer.ImportCandidates.singleFile(ImportCandidates.java:414)

        at ome.formats.importer.ImportCandidates.handleFile(ImportCandidates.java:595)

        at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:367)

        at org.apache.commons.io.DirectoryWalker.walk(DirectoryWalker.java:335)

        at ome.formats.importer.ImportCandidates.execute(ImportCandidates.java:368)

        at ome.formats.importer.ImportCandidates.<init>(ImportCandidates.java:229)

SCANNING: Depth:0 Num:    2 Tot:    2 File: asel/Charles/SP5

2 file(s) parsed into 0 group(s) with 1 call(s) to setId in 68ms. (77ms total) [0 unknowns]

References

Change History (2)

comment:1 Changed 10 years ago by mlinkert

Component changed from General to Bio-Formats
Priority changed from minor to major
Summary changed from Bug : bug in Bio-Formats with LIF file to Bug : newer .lif files fail to initialize

comment:2 Changed 10 years ago by mlinkert

Description modified (diff)

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