Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #12530 (closed)

Opened 10 years ago

Closed 10 years ago

Last modified 10 years ago

Bug: in 5.1 in-place ln_s dies with "Permission denied" on file

Reported by: mtbcarroll Owned by: bpindelski
Priority: critical Milestone: 5.1.0-m1
Component: Services Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: n.a.

Description (last modified by mtbcarroll)

With 5.0 latest (remotes/origin/dev_5_0),

$ omero import -- --transfer=ln_s test_images_good/jpeg/2kx2k.jpg
Previously logged in to localhost:4064 as root
Server: [localhost]
Username: [root]user-2
Password:
Created session 6ad13c4f-92ca-4fcf-a78a-dd4c7ed14d6b (user-2@localhost:4064). Idle timeout: 10.0 min. Current group: private-1
2014-08-20 09:10:48,830 179        [      main] INFO          ome.formats.importer.ImportConfig - OMERO Version: 5.0.4-ice34-SNAPSHOT
2014-08-20 09:10:48,843 192        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 5.0.4-ice34-SNAPSHOT revision: 5f987c0 date: 20 August 2014
2014-08-20 09:10:48,847 196        [      main] INFO   formats.importer.cli.CommandLineImporter - Setting transfer to ln_s
2014-08-20 09:10:48,850 199        [      main] INFO   formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
2014-08-20 09:10:49,043 392        [      main] INFO      ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
2014-08-20 09:10:49,752 1101       [      main] INFO      ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 704ms. (709ms total) [0 unknowns]
2014-08-20 09:10:49,964 1313       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:4064
2014-08-20 09:10:50,405 1754       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
2014-08-20 09:10:50,992 2341       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Server: 5.0.4
2014-08-20 09:10:50,992 2341       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Client: 5.0.4-ice34-SNAPSHOT
2014-08-20 09:10:50,992 2341       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Java Version: 1.7.0_65
2014-08-20 09:10:50,992 2341       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Name: Linux
2014-08-20 09:10:50,992 2341       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
2014-08-20 09:10:50,992 2341       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Version: 3.2.0-4-amd64
2014-08-20 09:10:51,092 2441       [      main] INFO   ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_PREPARATION
2014-08-20 09:10:52,244 3593       [      main] INFO   ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_START
2014-08-20 09:10:52,268 3617       [      main] INFO   s.importer.transfers.SymlinkFileTransfer - Transferring /home/mtbc/ome/data_repo/test_images_good/jpeg/2kx2k.jpg...
2014-08-20 09:10:52,373 3722       [      main] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /home/mtbc/ome/data_repo/test_images_good/jpeg/2kx2k.jpg
2014-08-20 09:10:52,489 3838       [      main] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_COMPLETE: /home/mtbc/ome/data_repo/test_images_good/jpeg/2kx2k.jpg
2014-08-20 09:10:52,681 4030       [      main] INFO   ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_END
2014-08-20 09:10:54,060 5409       [l.Client-1] INFO   ormats.importer.cli.LoggingImportMonitor - METADATA_IMPORTED Step: 1 of 5  Logfile: 24
2014-08-20 09:10:54,661 6010       [l.Client-0] INFO   ormats.importer.cli.LoggingImportMonitor - PIXELDATA_PROCESSED Step: 2 of 5  Logfile: 24
2014-08-20 09:10:55,928 7277       [l.Client-1] INFO   ormats.importer.cli.LoggingImportMonitor - THUMBNAILS_GENERATED Step: 3 of 5  Logfile: 24
2014-08-20 09:10:55,986 7335       [l.Client-0] INFO   ormats.importer.cli.LoggingImportMonitor - METADATA_PROCESSED Step: 4 of 5  Logfile: 24
2014-08-20 09:10:56,027 7376       [l.Client-1] INFO   ormats.importer.cli.LoggingImportMonitor - OBJECTS_RETURNED Step: 5 of 5  Logfile: 24
2014-08-20 09:10:56,189 7538       [l.Client-0] INFO   ormats.importer.cli.LoggingImportMonitor - IMPORT_DONE Imported file: /home/mtbc/ome/data_repo/test_images_good/jpeg/2kx2k.jpg
Imported pixels:
1
Other imported objects:
Fileset:1
Image:1
2014-08-20 09:10:56,189 7538       [l.Client-0] INFO      ome.formats.importer.cli.ErrorHandler - Number of errors: 0

With 5.1 latest (remotes/origin/develop),

$ omero import -- --transfer=ln_s test_images_good/jpeg/2kx2k.jpg
Previously logged in to localhost:4064 as root
Server: [localhost]
Username: [root]user-2
Password:
Created session 91407559-0dc8-4e96-a485-a752dae1964e (user-2@localhost:4064). Idle timeout: 10.0 min. Current group: private-1
2014-08-20 09:02:55,368 187        [      main] INFO          ome.formats.importer.ImportConfig - OMERO Version: 5.1.0-m0.5-ice34-SNAPSHOT
2014-08-20 09:02:55,382 201        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 5.1.0-m0.5-ice34-SNAPSHOT revision: 87fbabc date: 20 August 2014
2014-08-20 09:02:55,386 205        [      main] INFO   formats.importer.cli.CommandLineImporter - Setting transfer to ln_s
2014-08-20 09:02:55,389 208        [      main] INFO   formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
2014-08-20 09:02:55,603 422        [      main] INFO      ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
2014-08-20 09:02:56,269 1088       [      main] INFO      ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 656ms. (665ms total) [0 unknowns]
2014-08-20 09:02:57,496 2315       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:4064
2014-08-20 09:02:57,938 2757       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
2014-08-20 09:02:58,596 3415       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Server: 5.1.0
2014-08-20 09:02:58,596 3415       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Client: 5.1.0-m0.5-ice34-SNAPSHOT
2014-08-20 09:02:58,596 3415       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Java Version: 1.7.0_65
2014-08-20 09:02:58,597 3416       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Name: Linux
2014-08-20 09:02:58,597 3416       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
2014-08-20 09:02:58,597 3416       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Version: 3.2.0-4-amd64
2014-08-20 09:02:58,766 3585       [      main] INFO   ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_PREPARATION
2014-08-20 09:02:59,661 4480       [      main] INFO   ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_START
2014-08-20 09:02:59,679 4498       [      main] INFO   s.importer.transfers.SymlinkFileTransfer - Transferring /home/mtbc/ome/data_repo/test_images_good/jpeg/2kx2k.jpg...
2014-08-20 09:02:59,813 4632       [      main] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /home/mtbc/ome/data_repo/test_images_good/jpeg/2kx2k.jpg
2014-08-20 09:03:00,074 4893       [      main] ERROR     ome.formats.importer.cli.ErrorHandler - FILE_EXCEPTION: /home/mtbc/ome/data_repo/test_images_good/jpeg/2kx2k.jpg
omero.ResourceError: null
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_65]
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_65]
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_65]
	at java.lang.reflect.Constructor.newInstance(Constructor.java:526) ~[na:1.7.0_65]
	at java.lang.Class.newInstance(Class.java:374) ~[na:1.7.0_65]
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2142) ~[ice.jar:na]
	at IceInternal.BasicStream.throwException(BasicStream.java:1564) ~[ice.jar:na]
	at IceInternal.Outgoing.throwUserException(Outgoing.java:443) ~[ice.jar:na]
	at omero.api._RawFileStoreDelM.save(_RawFileStoreDelM.java:183) ~[blitz.jar:na]
	at omero.api.RawFileStorePrxHelper.save(RawFileStorePrxHelper.java:527) ~[blitz.jar:na]
	at omero.api.RawFileStorePrxHelper.save(RawFileStorePrxHelper.java:500) ~[blitz.jar:na]
	at ome.formats.importer.transfers.TransferState.save(TransferState.java:113) ~[blitz.jar:na]
	at ome.formats.importer.transfers.AbstractFileTransfer.finish(AbstractFileTransfer.java:111) ~[blitz.jar:na]
	at ome.formats.importer.transfers.AbstractExecFileTransfer.transfer(AbstractExecFileTransfer.java:81) ~[blitz.jar:na]
	at ome.formats.importer.ImportLibrary.uploadFile(ImportLibrary.java:414) [blitz.jar:na]
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:477) [blitz.jar:na]
	at ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:271) [blitz.jar:na]
	at ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java:216) [blitz.jar:na]
	at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:731) [blitz.jar:na]
2014-08-20 09:03:00,079 4898       [      main] ERROR        ome.formats.importer.ImportLibrary - Error on import: /home/mtbc/var/omero/ManagedRepository/user-2_3/2014-08/20/09-02-58.928/2kx2k.jpg (Permission denied)
omero.ResourceError: null
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_65]
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_65]
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_65]
	at java.lang.reflect.Constructor.newInstance(Constructor.java:526) ~[na:1.7.0_65]
	at java.lang.Class.newInstance(Class.java:374) ~[na:1.7.0_65]
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2142) ~[ice.jar:na]
	at IceInternal.BasicStream.throwException(BasicStream.java:1564) ~[ice.jar:na]
	at IceInternal.Outgoing.throwUserException(Outgoing.java:443) ~[ice.jar:na]
	at omero.api._RawFileStoreDelM.save(_RawFileStoreDelM.java:183) ~[blitz.jar:na]
	at omero.api.RawFileStorePrxHelper.save(RawFileStorePrxHelper.java:527) ~[blitz.jar:na]
	at omero.api.RawFileStorePrxHelper.save(RawFileStorePrxHelper.java:500) ~[blitz.jar:na]
	at ome.formats.importer.transfers.TransferState.save(TransferState.java:113) ~[blitz.jar:na]
	at ome.formats.importer.transfers.AbstractFileTransfer.finish(AbstractFileTransfer.java:111) ~[blitz.jar:na]
	at ome.formats.importer.transfers.AbstractExecFileTransfer.transfer(AbstractExecFileTransfer.java:81) ~[blitz.jar:na]
	at ome.formats.importer.ImportLibrary.uploadFile(ImportLibrary.java:414) ~[blitz.jar:na]
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:477) ~[blitz.jar:na]
	at ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:271) ~[blitz.jar:na]
	at ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java:216) [blitz.jar:na]
	at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:731) [blitz.jar:na]
2014-08-20 09:03:00,079 4898       [      main] INFO         ome.formats.importer.ImportLibrary - Exiting on error

Attachments (1)

Blitz-0.log​ (51.4 KB) - added by mtbcarroll 10 years ago.
5.1 failed import

Download all attachments as: .zip

Change History (10)

Changed 10 years ago by mtbcarroll

5.1 failed import

comment:1 Changed 10 years ago by bpindelski

Mark: I wonder if this could be due to (I presume that's the case here) a remote mount (/ome) being the source of the image. I remember doing ln_s recently on OS X with /Volumes/ome and it worked fine.

comment:2 Changed 10 years ago by mtbcarroll

  • Description modified (diff)

I am certainly curious about what is different between dev_5_0 and develop to cause in-place import to break like this on the latter.

One issue may be that, not only is it a remote mount, but, in avoidance of faffing with user mapping, my CIFS options make it look like I have greater access to the file than I suspect that I actually do:

$ ls -l test_images_good/jpeg/2kx2k.jpg
-rw-rw-r-- 1 mtbc mtbc 497926 Jun  6  2011 test_images_good/jpeg/2kx2k.jpg
Last edited 10 years ago by mtbcarroll (previous) (diff)

comment:3 Changed 10 years ago by mtbcarroll

No, I get the same error if I arrange for,

$ ls -l test_images_good/jpeg/2kx2k.jpg
-r--r--r-- 1 root root 497926 Jun  6  2011 test_images_good/jpeg/2kx2k.jpg

Even from a local partition,

$ omero import -- --transfer=ln_s /tmp/2kx2k.jpg 
Using session c1788a3a-423f-4c15-989b-49a89a657e42 (user-2@localhost:4064). Idle timeout: 10.0 min. Current group: private-1
2014-08-21 15:14:30,964 178        [      main] INFO          ome.formats.importer.ImportConfig - OMERO Version: 5.1.0-m0.5-ice34-SNAPSHOT
2014-08-21 15:14:30,976 190        [      main] INFO          ome.formats.importer.ImportConfig - Bioformats version: 5.1.0-m0.5-ice34-SNAPSHOT revision: 87fbabc date: 20 August 2014
2014-08-21 15:14:30,981 195        [      main] INFO   formats.importer.cli.CommandLineImporter - Setting transfer to ln_s
2014-08-21 15:14:30,984 198        [      main] INFO   formats.importer.cli.CommandLineImporter - Log levels -- Bio-Formats: ERROR OMERO.importer: INFO
2014-08-21 15:14:31,183 397        [      main] INFO      ome.formats.importer.ImportCandidates - Depth: 4 Metadata Level: MINIMUM
2014-08-21 15:14:31,815 1029       [      main] INFO      ome.formats.importer.ImportCandidates - 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 630ms. (632ms total) [0 unknowns]
2014-08-21 15:14:33,046 2260       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Attempting initial SSL connection to localhost:4064
2014-08-21 15:14:33,474 2688       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Insecure connection requested, falling back
2014-08-21 15:14:33,964 3178       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Server: 5.1.0
2014-08-21 15:14:33,964 3178       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Client: 5.1.0-m0.5-ice34-SNAPSHOT
2014-08-21 15:14:33,964 3178       [      main] INFO       ome.formats.OMEROMetadataStoreClient - Java Version: 1.7.0_65
2014-08-21 15:14:33,965 3179       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Name: Linux
2014-08-21 15:14:33,965 3179       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Arch: amd64
2014-08-21 15:14:33,965 3179       [      main] INFO       ome.formats.OMEROMetadataStoreClient - OS Version: 3.2.0-4-amd64
2014-08-21 15:14:34,090 3304       [      main] INFO   ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_PREPARATION
2014-08-21 15:14:34,790 4004       [      main] INFO   ormats.importer.cli.LoggingImportMonitor - FILESET_UPLOAD_START
2014-08-21 15:14:34,809 4023       [      main] INFO   s.importer.transfers.SymlinkFileTransfer - Transferring /tmp/2kx2k.jpg...
2014-08-21 15:14:34,968 4182       [      main] INFO   ormats.importer.cli.LoggingImportMonitor - FILE_UPLOAD_STARTED: /tmp/2kx2k.jpg
2014-08-21 15:14:35,218 4432       [      main] ERROR     ome.formats.importer.cli.ErrorHandler - FILE_EXCEPTION: /tmp/2kx2k.jpg
omero.ResourceError: null
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_65]
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_65]
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_65]
	at java.lang.reflect.Constructor.newInstance(Constructor.java:526) ~[na:1.7.0_65]
	at java.lang.Class.newInstance(Class.java:374) ~[na:1.7.0_65]
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2142) ~[ice.jar:na]
	at IceInternal.BasicStream.throwException(BasicStream.java:1564) ~[ice.jar:na]
	at IceInternal.Outgoing.throwUserException(Outgoing.java:443) ~[ice.jar:na]
	at omero.api._RawFileStoreDelM.save(_RawFileStoreDelM.java:183) ~[blitz.jar:na]
	at omero.api.RawFileStorePrxHelper.save(RawFileStorePrxHelper.java:527) ~[blitz.jar:na]
	at omero.api.RawFileStorePrxHelper.save(RawFileStorePrxHelper.java:500) ~[blitz.jar:na]
	at ome.formats.importer.transfers.TransferState.save(TransferState.java:113) ~[blitz.jar:na]
	at ome.formats.importer.transfers.AbstractFileTransfer.finish(AbstractFileTransfer.java:111) ~[blitz.jar:na]
	at ome.formats.importer.transfers.AbstractExecFileTransfer.transfer(AbstractExecFileTransfer.java:81) ~[blitz.jar:na]
	at ome.formats.importer.ImportLibrary.uploadFile(ImportLibrary.java:414) [blitz.jar:na]
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:477) [blitz.jar:na]
	at ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:271) [blitz.jar:na]
	at ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java:216) [blitz.jar:na]
	at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:731) [blitz.jar:na]
2014-08-21 15:14:35,225 4439       [      main] ERROR        ome.formats.importer.ImportLibrary - Error on import: /home/mtbc/var/omero/ManagedRepository/user-2_3/2014-08/21/15-14-34.213/2kx2k.jpg (Permission denied)
omero.ResourceError: null
	at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) ~[na:1.7.0_65]
	at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) ~[na:1.7.0_65]
	at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) ~[na:1.7.0_65]
	at java.lang.reflect.Constructor.newInstance(Constructor.java:526) ~[na:1.7.0_65]
	at java.lang.Class.newInstance(Class.java:374) ~[na:1.7.0_65]
	at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2142) ~[ice.jar:na]
	at IceInternal.BasicStream.throwException(BasicStream.java:1564) ~[ice.jar:na]
	at IceInternal.Outgoing.throwUserException(Outgoing.java:443) ~[ice.jar:na]
	at omero.api._RawFileStoreDelM.save(_RawFileStoreDelM.java:183) ~[blitz.jar:na]
	at omero.api.RawFileStorePrxHelper.save(RawFileStorePrxHelper.java:527) ~[blitz.jar:na]
	at omero.api.RawFileStorePrxHelper.save(RawFileStorePrxHelper.java:500) ~[blitz.jar:na]
	at ome.formats.importer.transfers.TransferState.save(TransferState.java:113) ~[blitz.jar:na]
	at ome.formats.importer.transfers.AbstractFileTransfer.finish(AbstractFileTransfer.java:111) ~[blitz.jar:na]
	at ome.formats.importer.transfers.AbstractExecFileTransfer.transfer(AbstractExecFileTransfer.java:81) ~[blitz.jar:na]
	at ome.formats.importer.ImportLibrary.uploadFile(ImportLibrary.java:414) ~[blitz.jar:na]
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:477) ~[blitz.jar:na]
	at ome.formats.importer.ImportLibrary.importCandidates(ImportLibrary.java:271) ~[blitz.jar:na]
	at ome.formats.importer.cli.CommandLineImporter.start(CommandLineImporter.java:216) [blitz.jar:na]
	at ome.formats.importer.cli.CommandLineImporter.main(CommandLineImporter.java:731) [blitz.jar:na]
2014-08-21 15:14:35,225 4439       [      main] INFO         ome.formats.importer.ImportLibrary - Exiting on error

comment:4 Changed 10 years ago by bpindelski

It seems that there is still something wrong with omero.import.active_close:

  1. With JAVA_OPTS=-Domero.import.active_close=false the import succeeds without error.
  2. With JAVA_OPTS=-Domero.import.active_close=true the import fails with the above error.

comment:5 Changed 10 years ago by bpindelski

And since dev_5_0 has active_close set to false by default, this would explain why ln_s works on dev_5_0.

comment:6 Changed 10 years ago by bpindelski

  • Owner changed from jamoore to bpindelski
  • Status changed from new to accepted

Initial fix now on ​https://github.com/bpindelski/openmicroscopy/tree/12530-inplace

comment:7 Changed 10 years ago by bpindelski

  • Cc ux@… removed
  • Component changed from Import to Services

comment:8 Changed 10 years ago by Blazej Pindelski <bpindelski@…>

  • Remaining Time set to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

(In [8c3213d2c49cb32e6d57b2556231b719408d2e81/ome.git] on branch develop) Fix #12530: detect Windows if closing RFS.

This change ultimately short-circuits the ACTIVE_CLOSE
setting, by not requiring the user to set it explicitly via
JAVA_OPTS. We are aware of the RawFileStore? closing requirement
on Windows, hence we do it there.

comment:9 Changed 10 years ago by Josh Moore <josh.moore@…>

(In [efb7f8484d28c8d6e79779a6eab759c21c6c7d7a/ome.git] on branch develop) Merge pull request #2982 from bpindelski/12530-inplace

Fix #12530: detect Windows if closing RFS.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.70067 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!