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Task #12888 (closed)

Opened 9 years ago

Closed 9 years ago

Last modified 9 years ago

Bug: array out of bounds reading mov file

Reported by:	mtbcarroll	Owned by:	mlinkert
Priority:	minor	Milestone:	B-F-5.1.4
Component:	Bio-Formats	Version:	5.1.1
Keywords:	NativeQTReader	Cc:	bf@…, Ellen.Skarpen@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	n.a.

Description (last modified by mtbcarroll)

https://www.openmicroscopy.org/qa2/qa/feedback/11074/ provides an Apple QuickTime movie for which, with latest 5.1, import fails with,

java.lang.RuntimeException: Failure response on import!
Category: ::omero::grid::ImportRequest
Name: import-request-failure
Parameters: {message=, stacktrace=java.lang.ArrayIndexOutOfBoundsException
	at java.lang.System.arraycopy(Native Method)
	at loci.formats.in.NativeQTReader.openBytes(NativeQTReader.java:258)
	at loci.formats.DelegateReader.openBytes(DelegateReader.java:227)
	at loci.formats.ImageReader.openBytes(ImageReader.java:453)
	at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:156)
	at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:148)
	at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:196)
	at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:349)
	at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:349)
	at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:269)
	at ome.services.blitz.repo.ManagedImportRequestI.parseDataByPlane(ManagedImportRequestI.java:747)
	at ome.services.blitz.repo.ManagedImportRequestI.parseData(ManagedImportRequestI.java:678)
...

References

Change History (5)

comment:1 Changed 9 years ago by mtbcarroll

Description modified (diff)

comment:2 Changed 9 years ago by mlinkert

Milestone changed from Unscheduled to 5.1.4

comment:3 Changed 9 years ago by mlinkert

Resolution set to fixed
Status changed from new to closed

PR open: https://github.com/openmicroscopy/bioformats/pull/1946

comment:4 Changed 9 years ago by Melissa Linkert <melissa@…>

Remaining Time set to 0

(In [1f91ed2325d0c102b77ec9839e384fb68eabbb7f/bioformats.git] on branch develop) QT: use the previous plane if there is no data for the current plane

Fixes #12888.

comment:5 Changed 9 years ago by jamoore

Milestone changed from 5.1.4 to B-F-5.1.4

Splitting 5.1.4 due to milestone decoupling

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