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Task #2654 (closed)

Opened 14 years ago

Closed 14 years ago

BUG:Feedback 2590

Reported by:	omero-qa	Owned by:	bwzloranger
Priority:	minor	Milestone:	OMERO-Beta4.2.1
Component:	from QA	Version:	4.1
Keywords:	n.a.	Cc:	cxallan, todd.stokes@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	n.a.

Description

http://qa.openmicroscopy.org.uk/qa/feedback/2590/

Comment: The import process covers all of the images in this directory, even when I only select one file for import. Somehow, the mdb file triggers this. However, after running through the count-up of every image and slice in the dataset, the ArrayIndexOutOfBounds?(-1) exception appears. None of the images appear in the archive.

java.lang.ArrayIndexOutOfBoundsException: -1
	at ome.formats.OMEROMetadataStoreClient.byUUID(OMEROMetadataStoreClient.java:1558)
	at ome.formats.OMEROMetadataStoreClient.writeFilesToFileStore(OMEROMetadataStoreClient.java:1585)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:608)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:384)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:215)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source)
	at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
	at java.util.concurrent.FutureTask.run(Unknown Source)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
	at java.lang.Thread.run(Unknown Source)

References

Change History (7)

comment:1 Changed 14 years ago by bwzloranger

Milestone changed from Unscheduled to OMERO-Beta4.2.1
Resolution set to fixed
Status changed from new to closed

Fixed now in the current build (r7715) for release 4.2.1.

comment:2 Changed 14 years ago by bwzloranger

Resolution fixed deleted
Status changed from closed to reopened

comment:3 Changed 14 years ago by bwzloranger

(In [7723]) additional logging enabled for method byUUID in OmeroMetaDataStore? (See #2654)

comment:4 Changed 14 years ago by bwzloranger

(In [7751]) update error reporting for UUID bug in metadata store (see #2654)

comment:5 Changed 14 years ago by bwzloranger

Cc cxallan added

comment:6 Changed 14 years ago by bwzloranger

(In [7753]) update error reporting for UUID bug in metadata store (see #2654)

comment:7 Changed 14 years ago by bwzloranger

Resolution set to fixed
Status changed from reopened to closed

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