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Task #2883 (new)

Opened 14 years ago

Last modified 8 years ago

MicrobeamManipulationType and ExperimentType are XSD:List Attributes, Not supported in our model

Reported by: bwzloranger Owned by: cxallan
Priority: major Milestone: GatherReqs
Component: Model Version: n.a.
Keywords: dbmodelcompare, schema Cc: omero-team@…
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: n.a.

Description (last modified by ajpatterson)

Will need to add functionality to support this.

In the model the type is not exclusive so it is valid to have an experiment type of "Screen TimeLapse Immunofluorescence"

Change History (13)

comment:1 Changed 14 years ago by bwzloranger

As an example, importer these will generate:

loci.formats.FormatException?: loci.common.services.ServiceException?: ome.xml.model.enums.EnumerationException?: FRET TimeLapse? FourDPlus not a supported value of class ome.xml.model.enums.ExperimentType?

at loci.formats.in.OMEXMLReader.initFile(OMEXMLReader.java:255)
at loci.formats.FormatReader?.setId(FormatReader?.java:1074)
at loci.formats.ImageReader?.setId(ImageReader?.java:650)
at loci.formats.ReaderWrapper?.setId(ReaderWrapper?.java:480)
at loci.formats.ChannelFiller?.setId(ChannelFiller?.java:244)
at loci.formats.ReaderWrapper?.setId(ReaderWrapper?.java:480)
at loci.formats.ChannelSeparator?.setId(ChannelSeparator?.java:238)
at loci.formats.ReaderWrapper?.setId(ReaderWrapper?.java:480)
at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:255)
at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:447)
at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:384)
at ome.formats.importer.gui.ImportHandler?.importImages(ImportHandler?.java:216)
at ome.formats.importer.gui.ImportHandler?.access$100(ImportHandler?.java:59)
at ome.formats.importer.gui.ImportHandler?$2.run(ImportHandler?.java:134)
at java.util.concurrent.Executors$RunnableAdapter?.call(Executors.java:441)
at java.util.concurrent.FutureTask?$Sync.innerRun(FutureTask?.java:303)
at java.util.concurrent.FutureTask?.run(FutureTask?.java:138)
at java.util.concurrent.ScheduledThreadPoolExecutor?$ScheduledFutureTask?.access$301(ScheduledThreadPoolExecutor?.java:98)
at java.util.concurrent.ScheduledThreadPoolExecutor?$ScheduledFutureTask?.run(ScheduledThreadPoolExecutor?.java:207)
at java.util.concurrent.ThreadPoolExecutor?$Worker.runTask(ThreadPoolExecutor?.java:886)
at java.util.concurrent.ThreadPoolExecutor?$Worker.run(ThreadPoolExecutor?.java:908)
at java.lang.Thread.run(Thread.java:637)

Caused by: loci.common.services.ServiceException?: ome.xml.model.enums.EnumerationException?: FRET TimeLapse? FourDPlus not a supported value of class ome.xml.model.enums.ExperimentType?

at loci.formats.services.OMEXMLServiceImpl.createRoot(OMEXMLServiceImpl.java:240)
at loci.formats.services.OMEXMLServiceImpl.createOMEXMLMetadata(OMEXMLServiceImpl.java:192)
at loci.formats.services.OMEXMLServiceImpl.createOMEXMLMetadata(OMEXMLServiceImpl.java:184)
at loci.formats.in.OMEXMLReader.initFile(OMEXMLReader.java:249)
... 21 more

Caused by: ome.xml.model.enums.EnumerationException?: FRET TimeLapse? FourDPlus not a supported value of class ome.xml.model.enums.ExperimentType?

at ome.xml.model.enums.ExperimentType?.fromString(ExperimentType?.java:119)
at ome.xml.model.Experiment.update(Experiment.java:138)
at ome.xml.model.Experiment.(Experiment.java:108)
at ome.xml.model.OME.update(OME.java:183)
at ome.xml.model.OME.(OME.java:126)
at loci.formats.services.OMEXMLServiceImpl.createRoot(OMEXMLServiceImpl.java:235)
... 24 more

Version 0, edited 14 years ago by bwzloranger (next)

comment:2 Changed 13 years ago by jmoore

Referencing ticket #2798 has changed sprint.

comment:3 Changed 13 years ago by jburel

Referencing ticket #2798 has changed sprint.

comment:4 Changed 12 years ago by ajpatterson

  • Description modified (diff)

comment:5 Changed 12 years ago by ajpatterson

  • Description modified (diff)

comment:6 Changed 12 years ago by ajpatterson

  • Keywords dbmodelcompare schema added

comment:7 Changed 12 years ago by jburel

  • Milestone changed from Unscheduled to OMERO-Beta4.5

comment:8 Changed 12 years ago by jburel

Referencing ticket #8084 has changed sprint.

comment:9 Changed 11 years ago by ajpatterson

Referencing ticket #8084 has changed sprint.

comment:10 Changed 11 years ago by ajpatterson

  • Milestone changed from OMERO-5 to Future

comment:11 Changed 8 years ago by jamoore

Referencing ticket #8084 has changed sprint.

comment:12 Changed 8 years ago by jamoore

Referencing ticket #8084 has changed sprint.

comment:13 Changed 8 years ago by jamoore

  • Milestone changed from Future to GatherReqs
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