Task #3101 (closed)
Opened 14 years ago
Closed 13 years ago
FLIM: New flim script
Reported by: | dzmacdonald | Owned by: | dzmacdonald |
---|---|---|---|
Priority: | critical | Milestone: | Work in Progress |
Component: | Scripting | Version: | n.a. |
Keywords: | n.a. | Cc: | jburel, jrswedlow, d.lleres@…, p.schofield@…, geoff@…, jamoore, jos@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description (last modified by dzmacdonald)
Modify new flim script from Pieta to work against OMERO, this script uses MPI and works on the cluster. It currently does not have any OMERO elements to it
todo:
- get images from datasets
- work on subset of pixels
- upload results original file
Tasks:
- Update script to talk to OMERO
- Add methods to get images from OMERO Datasets, containing control and experimental conditions. [DONE]
- Update the script to attach PDF to Datasets [DONE]
- Update script to attach CSV file to images.
- Set up cluster at Edinburgh
- Setup admin permissions [DONE]
- Install OMERO [DONE]
- Install SGE [DONE]
- Install MPI
- Install RAPID
- Import data
- Import STD data to OMERO
- Setup RAPID to work on original script
- Setup RAPID to work on new script that talks to OMERO
- Test original script
- Test new script
- Documentation
- Write documentation on setting up grid.
- Install ICE
- Install MPI
- Write documentation on RAPID.
- Installing RAPID
- Setting up RAPID to talk to deploy script.
- Write documentation on setting up grid.
Change History (6)
comment:1 Changed 14 years ago by jburel
- Status changed from new to assigned
comment:2 Changed 14 years ago by dzmacdonald
- Milestone changed from OMERO-Beta4.2.1 to Work in Progress
- Sprint 2010-10-28 (18) deleted
comment:3 Changed 13 years ago by dzmacdonald
- Description modified (diff)
comment:4 Changed 13 years ago by dzmacdonald
- Description modified (diff)
comment:5 Changed 13 years ago by dzmacdonald
- Cc jrswedlow d.lleres@… p.schofield@… geoff@… jmoore jos@… added
comment:6 Changed 13 years ago by dzmacdonald
- Resolution set to duplicate
- Status changed from assigned to closed
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