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Task #3241 (closed)

Opened 14 years ago

Closed 14 years ago

BUG:Feedback 2983

Reported by:	omero-qa	Owned by:	cxallan
Priority:	minor	Milestone:	OMERO-Beta4.2.1
Component:	from QA	Version:	n.a.
Keywords:	n.a.	Cc:	ac744@…
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	2010-11-11 (19)

Description

http://qa.openmicroscopy.org.uk/qa/feedback/2983/

Comment:
Flex file from a recent Opera microscope. They load fine with LOCI under ImageJ (both trunk and 4.2) and the import of other older flex from another Opera works fine with same OMERO server...

java.lang.NullPointerException
	at ome.formats.model.ChannelData.fromObjectContainerStore(ChannelData.java:266)
	at ome.formats.model.ChannelProcessor.process(ChannelProcessor.java:455)
	at ome.formats.OMEROMetadataStoreClient.postProcess(OMEROMetadataStoreClient.java:1832)
	at ome.formats.importer.ImportLibrary.importMetadata(ImportLibrary.java:295)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:484)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:384)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:215)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:206)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:680)

References

Change History (7)

comment:1 Changed 14 years ago by cxallan

Milestone changed from Unscheduled to OMERO-Beta4.2.1
Sprint set to 2010-11-11 (19)
Status changed from new to assigned

comment:2 Changed 14 years ago by cxallan

Data coming from Bio-Formats:

...
2010-11-04 13:47:54,351 5770       [      main] ERROR      ome.formats.OMEROMetadataStoreClient  - setLightPathExcitationFilterRef('null', 0, 0, 0)
...

comment:3 Changed 14 years ago by cxallan

Owner changed from cxallan to mlinkert-x
Status changed from assigned to new

comment:4 Changed 14 years ago by cxallan

(In [8515]) Better error than a NullPointerException? for Filters that cannot be looked up. (See #3241)

comment:5 Changed 14 years ago by mlinkert

This should be fixed in bio-formats:r7153.

comment:6 Changed 14 years ago by mlinkert

Owner changed from mlinkert-x to cxallan

comment:7 Changed 14 years ago by cxallan

Resolution set to fixed
Status changed from new to closed

Tested with r8558 and verified as fixed. Will be included with milestone:OMERO-Beta4.2.1 release.

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