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Task #5922 (closed)

Opened 13 years ago

Closed 13 years ago

Last modified 13 years ago

Bug: Infinite loop while decoding MetaMorph STK with ND file

Reported by: cxallan Owned by: cxallan
Priority: critical Milestone: OMERO-Beta4.3.1
Component: Bio-Formats Version: n.a.
Keywords: n.a. Cc:
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2011-07-07 (1)

Description

Infinite loop stack:

"main" prio=5 tid=103800000 nid=0x100501000 runnable [100500000]
   java.lang.Thread.State: RUNNABLE
	at loci.formats.in.MetamorphReader.initFile(MetamorphReader.java:498)
	at loci.formats.FormatReader.setId(FormatReader.java:1072)
	at loci.formats.ImageReader.setId(ImageReader.java:670)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
	at loci.formats.ChannelFiller.setId(ChannelFiller.java:249)
	at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488)
	at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:257)
	at Test.test(Test.java:62)
	at Test.main(Test.java:82)

Change History (15)

comment:1 Changed 13 years ago by cxallan

  • Owner changed from mlinkert-x to cxallan
  • Status changed from new to accepted

comment:2 Changed 13 years ago by Chris Allan <callan@…>

(In [a41fa4a8bb7b01cb42b5c54fc267e272a9643b79/bioformats.git]) Ensure that the reader does not go into an infinite loop. (See #5922)

comment:3 Changed 13 years ago by Chris Allan <callan@…>

(In [1514530c092e575c6831fda6a8a0b2c6adb9e430/bioformats.git]) Handle slashes, forward or backward, in the wavelength name. (See #5922)

comment:4 Changed 13 years ago by Chris Allan <callan@…>

  • Remaining Time set to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

(In [85328d4bd377ea6070476d6b76dbc3ec863519e4/ome.git] on branch develop) Updating to [69c81d2fb86e21085dc71aa145f4eb2f5a8994fb/bioformats.git]. (Fixes #5922 and #5923)

comment:6 Changed 13 years ago by Chris Allan <callan@…>

(In [a41fa4a8bb7b01cb42b5c54fc267e272a9643b79/bioformats.git]) Ensure that the reader does not go into an infinite loop. (See #5922)

comment:7 Changed 13 years ago by Chris Allan <callan@…>

(In [1514530c092e575c6831fda6a8a0b2c6adb9e430/bioformats.git]) Handle slashes, forward or backward, in the wavelength name. (See #5922)

comment:8 Changed 13 years ago by Melissa Linkert <melissa@…>

(In [21abbf07255ea5d3d1063020aafbf09c666e1ff1/bioformats.git]) Ensure that the reader does not go into an infinite loop. (See #5922)
(cherry picked from commit a41fa4a8bb7b01cb42b5c54fc267e272a9643b79)

comment:9 Changed 13 years ago by Melissa Linkert <melissa@…>

(In [cbf18aee7f1c51e316f69230be19a5e53e9c7e34/bioformats.git]) Handle slashes, forward or backward, in the wavelength name. (See #5922)
(cherry picked from commit 1514530c092e575c6831fda6a8a0b2c6adb9e430)

comment:10 Changed 13 years ago by Melissa Linkert <melissa@…>

(In [21abbf07255ea5d3d1063020aafbf09c666e1ff1/bioformats.git]) Ensure that the reader does not go into an infinite loop. (See #5922)
(cherry picked from commit a41fa4a8bb7b01cb42b5c54fc267e272a9643b79)

comment:11 Changed 13 years ago by Melissa Linkert <melissa@…>

(In [cbf18aee7f1c51e316f69230be19a5e53e9c7e34/bioformats.git]) Handle slashes, forward or backward, in the wavelength name. (See #5922)
(cherry picked from commit 1514530c092e575c6831fda6a8a0b2c6adb9e430)

comment:12 Changed 13 years ago by Chris Allan <callan@…>

(In [a41fa4a8bb7b01cb42b5c54fc267e272a9643b79/bioformats.git]) Ensure that the reader does not go into an infinite loop. (See #5922)

comment:13 Changed 13 years ago by Chris Allan <callan@…>

(In [1514530c092e575c6831fda6a8a0b2c6adb9e430/bioformats.git]) Handle slashes, forward or backward, in the wavelength name. (See #5922)

comment:14 Changed 13 years ago by Chris Allan <callan@…>

(In [a41fa4a8bb7b01cb42b5c54fc267e272a9643b79/bioformats.git]) Ensure that the reader does not go into an infinite loop. (See #5922)

comment:15 Changed 13 years ago by Chris Allan <callan@…>

(In [1514530c092e575c6831fda6a8a0b2c6adb9e430/bioformats.git]) Handle slashes, forward or backward, in the wavelength name. (See #5922)

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