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Task #6028 (closed)

Opened 13 years ago

Closed 13 years ago

BUG: importing plate failed

Reported by:	atarkowska	Owned by:	jburel
Priority:	critical	Milestone:	OMERO-Beta4.3.1
Component:	Import	Version:	n.a.
Keywords:	n.a.	Cc:	cxallan, jburel
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	n.a.
Sprint:	2011-07-07 (1)

Description (last modified by atarkowska)

AO_10x_1x1_Control_Thy_RO_noFBS

I imported that yesterday and saw only pyramid icons becuase of

Thu, 30 Jun 2011 13:27:38 blitz_gateway DEBUG    omero.ApiUsageException on safeCallWrap getRenderingDefId((),{})
Thu, 30 Jun 2011 13:27:38 blitz_gateway DEBUG    Traceback (most recent call last):
  File "/Users/ola/Dev/omero/dist/lib/python/omero/gateway/__init__.py", line 2885, in inner
    return f(*args, **kwargs)
  File "/Users/ola/Dev/omero/dist/lib/python/omero_api_ThumbnailStore_ice.py", line 106, in getRenderingDefId
    return _M_omero.api.ThumbnailStore._op_getRenderingDefId.invoke(self, ((), _ctx))
ApiUsageException: exception ::omero::ApiUsageException
{
    serverStackTrace = ome.conditions.ApiUsageException: No rendering def

I was trying to reimport and it failed

java.lang.NullPointerException
	at ome.formats.OMEROMetadataStoreClient.createRoot(OMEROMetadataStoreClient.java:1039)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:670)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6309)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1251)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)

	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6354)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1251)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
	at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:680)
Caused by: java.lang.NullPointerException
	at ome.formats.OMEROMetadataStoreClient.createRoot(OMEROMetadataStoreClient.java:1039)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:670)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6309)
	... 12 more

References

Change History (9)

comment:1 Changed 13 years ago by atarkowska

Component changed from General to Insight
Description modified (diff)
Priority changed from minor to critical

comment:2 Changed 13 years ago by atarkowska

Cc cxallan added

comment:3 Changed 13 years ago by jburel

Cc jburel added
Component changed from Insight to Import

comment:4 Changed 13 years ago by jburel <j.burel@…>

(In [93d561f95e1cd0c4125d66d2ca10a7acbc0e86bb/ome.git] on branch develop) Make that the status of the session is checked (see #6028)

comment:5 Changed 13 years ago by jburel

Could you give me more information about the server and its status?
e.g. stopped during the check.

I added a missing check to see if the server was still running.
I have been able to import w/o problem otherwise.

Could you try again? and point me to the plate on squig so I can try with the same object.
Thanks

comment:6 Changed 13 years ago by atarkowska

THe name of the plate is on top data_repo/from_skyking/incell/brian/xdce_med/AO_10x_1x1_Control_Thy_RO_noFBS. I was using server version from Tuesday trunk.

comment:7 Changed 13 years ago by atarkowska

Seams to import correctly now

comment:8 Changed 13 years ago by jburel

I think it was due to the fact that I was not checking if the session was still alive for that call.

comment:9 Changed 13 years ago by jburel

Resolution set to fixed
Status changed from new to closed

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