Task #6223 (closed)
Add semi-definable templates to OMERO.server configuration
| Reported by: | cblackburn | Owned by: | cblackburn |
|---|---|---|---|
| Priority: | major | Milestone: | OMERO-4.4 |
| Component: | Bin-Services | Version: | n.a. |
| Keywords: | n.a. | Cc: | cxallan, jburel, jamoore |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | 0.0d |
| Sprint: | 2011-11-29 (3) |
Description (last modified by cxallan)
This means extension of omero.properties, additions to bin/omero config and Spring injection of the resultant value.
Initial strategy is to always have a forced user driven approach followed by a small set of supported tokens:
- Year
- Month
- Day
- OriginalFile.Id
So as outlined in #909, we would have something to the affect of:
... /OMERO/Repository/chris/2011/07/12/26/PlateQQ001_Metadata.xml /OMERO/Repository/chris/2011/07/12/26/Well001/Image_A1_field001_channel001.tif /OMERO/Repository/chris/2011/07/12/26/Well001/Image_A1_field001_channel002.tif /OMERO/Repository/chris/2011/07/12/26/Well002/Image_A2_field001_channel001.tif /OMERO/Repository/chris/2011/07/12/26/Well002/Image_A2_field001_channel002.tif ...
Where the template would be, for example: <year>/<month>/<day>/<OriginalFile.Id> with <username> force prefixed.
Change History (19)
comment:1 Changed 13 years ago by cxallan
- Remaining Time set to 2.0
comment:2 Changed 13 years ago by cxallan
- Owner jmoore deleted
comment:3 Changed 13 years ago by cxallan
- Owner set to cxallan
comment:4 Changed 13 years ago by cxallan
- Description modified (diff)
- Summary changed from Add definable templates to RawPixelsStore and import to Add definable templates to OMERO.server configuration
comment:5 Changed 13 years ago by cblackburn
- Owner changed from cxallan to cblackburn
- Status changed from new to accepted
comment:6 Changed 13 years ago by cblackburn
comment:7 Changed 13 years ago by cblackburn
- Owner changed from cblackburn to cxallan
- Sprint set to 2011-08-18 (3)
Work pushed to team/feature/909-Proposal2 now uses a template to build destination paths though the template is currently hard-coded rather than from omero.properties
comment:8 Changed 13 years ago by cxallan
- Sprint 2011-08-18 (3) deleted
comment:9 Changed 13 years ago by jburel
Referencing ticket #909 has changed sprint.
comment:10 Changed 13 years ago by jburel
- Milestone changed from OMERO-Beta4.3.2 to OME-5.0
comment:11 Changed 12 years ago by cxallan
- Cc cxallan jburel added
- Description modified (diff)
- Owner changed from cxallan to cblackburn
- Sprint set to 2011-11-29 (3)
- Summary changed from Add definable templates to OMERO.server configuration to Add semi-definable templates to OMERO.server configuration
comment:12 Changed 12 years ago by cxallan
- Description modified (diff)
comment:13 Changed 12 years ago by cblackburn
Extended omero.properties, injected and used the resultant value. No changes made to bin/omero config but it seems to handle changes to the template. Changes pushed to github.
comment:14 Changed 12 years ago by cblackburn
- Remaining Time changed from 2.0 to 1
comment:15 Changed 12 years ago by cblackburn
- Owner cblackburn deleted
- Status changed from accepted to new
comment:16 Changed 12 years ago by cxallan
Following from the work on Colin's fslite-stage2 branch, the following needs to be done to secure this functionality:
- Creation of a method on the repository interface to take the caller "into" the template directory
- Injection of omero.fslite.path into LegacyRepository as in the omeroDataDir of source:components/blitz/src/ome/services/blitz/impl/MetadataStoreI.java as defined in source:components/blitz/resources/ome/services/blitz-servantDefinitions.xml
- Stripping out of any ome.io.nio.* code from the "client" side
comment:17 Changed 12 years ago by cblackburn
- Owner set to cblackburn
- Status changed from new to accepted
comment:18 Changed 12 years ago by cblackburn
- Cc jmoore added
- Remaining Time changed from 1 to 0
- Resolution set to fixed
- Status changed from accepted to closed
Above functionality added. However, the work further exploits the PublicRepository? so this might be a time to refactor and create a "managed repository". (Closing the ticket for now.)
comment:19 Changed 12 years ago by Chris Allan <callan@…>
(In [499960c1576acc6b1d52846157226541f9c9e77a/ome.git] on branch develop) Added import path template to properties, see #6223
The first part of this is to modify OriginalFileService? to provide a template-based path location for the destination.