Task #6233 (closed)
Opened 13 years ago
Closed 13 years ago
BUG: DV import - Feedback 3871
Reported by: | omero-qa | Owned by: | mlinkert |
---|---|---|---|
Priority: | minor | Milestone: | OMERO-Beta4.3.2 |
Component: | Bio-Formats | Version: | n.a. |
Keywords: | n.a. | Cc: | G.Akman@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description
http://qa.openmicroscopy.org.uk/qa/feedback/3871/
Comment: When these files are re-imported into the Deltavision software, softworx, they import correctly. Also, these files are part of a dataset. They represent a failure rate of approx. 40%
java.io.IOException: Data error (cyclic redundancy check) at sun.nio.ch.FileDispatcher.pread0(Native Method) at sun.nio.ch.FileDispatcher.pread(Unknown Source) at sun.nio.ch.IOUtil.readIntoNativeBuffer(Unknown Source) at sun.nio.ch.IOUtil.read(Unknown Source) at sun.nio.ch.FileChannelImpl.read(Unknown Source) at loci.common.NIOByteBufferProvider.allocateDirect(NIOByteBufferProvider.java:120) at loci.common.NIOByteBufferProvider.allocate(NIOByteBufferProvider.java:105) at loci.common.NIOFileHandle.buffer(NIOFileHandle.java:482) at loci.common.NIOFileHandle.<init>(NIOFileHandle.java:103) at loci.common.NIOFileHandle.<init>(NIOFileHandle.java:111) at loci.common.NIOFileHandle.<init>(NIOFileHandle.java:119) at loci.common.Location.getHandle(Location.java:284) at loci.common.Location.getHandle(Location.java:255) at loci.formats.ImageReader.getReader(ImageReader.java:158) at loci.formats.ImageReader.setId(ImageReader.java:670) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488) at loci.formats.ChannelFiller.setId(ChannelFiller.java:249) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:257) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:488) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:248) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:402) at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6288) at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1137) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54) at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111) at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144) at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226) at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165) at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274) at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91) at java.lang.Thread.run(Unknown Source)
Change History (4)
comment:1 Changed 13 years ago by wmoore
comment:2 Changed 13 years ago by mlinkert
- Milestone changed from Unscheduled to OMERO-Beta4.3.2
comment:3 Changed 13 years ago by mlinkert
- Component changed from from QA to Bio-Formats
comment:4 Changed 13 years ago by mlinkert
- Resolution set to invalid
- Status changed from new to closed
This error message almost always means that the file or file system (e.g. hard drive) is corrupted in some way. Some things to try:
- Restart the computer.
- Verify that the files can be opened in the original acquisition software.
- If the files are not on a local hard drive (e.g. they are on a DVD or tape drive), copy them to your local hard drive and then try to import them.
http://qa.openmicroscopy.org.uk/qa/feedback/3872/ , 3873, 3874, 3875, 3876, 3877, 3878 too!