Task #6286 (closed)
Opened 13 years ago
Closed 13 years ago
BUG:Feedback 3862
Reported by: | omero-qa | Owned by: | mlinkert |
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Priority: | minor | Milestone: | Unscheduled |
Component: | from QA | Version: | n.a. |
Keywords: | n.a. | Cc: | peter.ciesielski@… |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description
http://qa.openmicroscopy.org.uk/qa/feedback/3862/
Comment: These errors caused failures on ~1200 images, but I'm not sure why because at least 100 imported successfully during the same session. Also, I unchecked all but 2 in the "import errors" tab of the importer so that you would just recieve feedback from representative errors rather than recieving the same repetitive error message from all the failures, but I'm not sure the check function works though because this form is still showing that you will recieve files for all 238 failures (not just the ones I checked).
java.lang.NullPointerException at loci.formats.in.FEITiffReader.initStandardMetadata(FEITiffReader.java:129) at loci.formats.in.BaseTiffReader.initMetadata(BaseTiffReader.java:74) at loci.formats.in.BaseTiffReader.initFile(BaseTiffReader.java:482) at loci.formats.FormatReader.setId(FormatReader.java:1058) at loci.formats.ImageReader.setId(ImageReader.java:650) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) at loci.formats.ChannelFiller.setId(ChannelFiller.java:244) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) at loci.formats.ChannelSeparator.setId(ChannelSeparator.java:238) at loci.formats.ReaderWrapper.setId(ReaderWrapper.java:480) at ome.formats.importer.ImportLibrary.open(ImportLibrary.java:245) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:483) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:433) at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:376) at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216) at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59) at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134) at java.util.concurrent.Executors$RunnableAdapter.call(Unknown Source) at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source) at java.util.concurrent.FutureTask.run(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(Unknown Source) at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source) at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source) at java.lang.Thread.run(Unknown Source)
Change History (1)
comment:1 Changed 13 years ago by mlinkert
- Resolution set to fixed
- Status changed from new to closed
This was fixed in [954caf05cf5a3e43764137d9bb1f425b99b9aad1/bioformats.git] and [3b16bd1f7af339b46e08ffc39b700f6fb2d2f3ef/ome.git].