Context Navigation

← Previous Ticket
Next Ticket →

Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.

Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #5071 (closed)

Opened 13 years ago

Closed 13 years ago

Last modified 13 years ago

BUG:Feedback 3684

Reported by:	omero-qa	Owned by:	melissa
Priority:	minor	Milestone:	Unscheduled
Component:	from QA	Version:	n.a.
Keywords:	n.a.	Cc:
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	n.a.

Description

http://qa.openmicroscopy.org.uk/qa/feedback/3684/

java.lang.IllegalArgumentException: Negative position
	at sun.nio.ch.FileChannelImpl.read(FileChannelImpl.java:600)
	at loci.common.NIOByteBufferProvider.allocateDirect(NIOByteBufferProvider.java:120)
	at loci.common.NIOByteBufferProvider.allocate(NIOByteBufferProvider.java:105)
	at loci.common.NIOFileHandle.buffer(NIOFileHandle.java:482)
	at loci.common.NIOFileHandle.seek(NIOFileHandle.java:204)
	at loci.common.RandomAccessInputStream.seek(RandomAccessInputStream.java:101)
	at loci.formats.in.MRCReader.openBytes(MRCReader.java:90)
	at loci.formats.ImageReader.openBytes(ImageReader.java:384)
	at loci.formats.ChannelFiller.openBytes(ChannelFiller.java:183)
	at loci.formats.ChannelSeparator.openBytes(ChannelSeparator.java:209)
	at loci.formats.ReaderWrapper.openBytes(ReaderWrapper.java:304)
	at loci.formats.MinMaxCalculator.openBytes(MinMaxCalculator.java:260)
	at ome.formats.importer.OMEROWrapper.openPlane2D(OMEROWrapper.java:180)
	at ome.formats.importer.OMEROWrapper.openPlane2D(OMEROWrapper.java:146)
	at ome.formats.importer.ImportLibrary.writeDataPlanarBased(ImportLibrary.java:848)
	at ome.formats.importer.ImportLibrary.importData(ImportLibrary.java:730)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:557)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:433)
	at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:376)
	at ome.formats.importer.gui.ImportHandler.importImages(ImportHandler.java:216)
	at ome.formats.importer.gui.ImportHandler.access$100(ImportHandler.java:59)
	at ome.formats.importer.gui.ImportHandler$2.run(ImportHandler.java:134)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$301(ScheduledThreadPoolExecutor.java:98)
	at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:206)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:680)

No files sent for this.

References

Change History (2)

comment:1 Changed 13 years ago by Melissa Linkert <melissa@…>

Remaining Time set to 0
Resolution set to fixed
Status changed from new to closed

(In [f7e8280efc5d066bb736ca5c5c9bc7e7c71dfa1b/bioformats.git]) Add checks to ensure that the pixel data offset is valid.

Closes #5071.

comment:2 Changed 13 years ago by Melissa Linkert <melissa@…>

(In [f7e8280efc5d066bb736ca5c5c9bc7e7c71dfa1b/bioformats.git]) Add checks to ensure that the pixel data offset is valid.

Closes #5071.

Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

Download in other formats: