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Task #6619 (closed)

Opened 13 years ago

Closed 13 years ago

Bug: HCS viewing plate cellworx

Reported by: saloynton Owned by: jburel
Priority: major Milestone: OMERO-Beta4.3.2
Component: Web Version: n.a.
Keywords: n.a. Cc: saloynton, atarkowska
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: n.a.
Sprint: 2011-09-15 (5)

Description

I had this message when viewing the cellworx HCS plate.

An extra note the server had been under extra stress as there were other hcs imports, deletes going on in the office too.

Traceback (most recent call last):

  File "/home/omero/OMERO.server-4.3.2-DEV-d71e4b48-b2780/lib/python/django/core/handlers/base.py", line 92, in get_response
    response = callback(request, *callback_args, **callback_kwargs)

  File "/home/omero/OMERO.server-4.3.2-DEV-d71e4b48-b2780/lib/python/omeroweb/webclient/views.py", line 169, in wrapped
    return f(request, *args, **kwargs)

  File "/home/omero/OMERO.server-4.3.2-DEV-d71e4b48-b2780/lib/python/omeroweb/webclient/views.py", line 623, in load_data
    form_well_index = WellIndexForm(initial={'index':index, 'range':fields})

  File "/home/omero/OMERO.server-4.3.2-DEV-d71e4b48-b2780/lib/python/omeroweb/webclient/forms.py", line 268, in __init__
    choices = [(str(i), "Field#%i" % (i-rmin+1)) for i in range(rmin, rmax+1)]

TypeError: unsupported operand type(s) for +: 'NoneType' and 'int'


<WSGIRequest
GET:<QueryDict: {}>,
POST:<QueryDict: {}>,
COOKIES:{'sessionid': '6d1150ef8a8d3f4c80a068dc92fb9948'},
META:{'DOCUMENT_ROOT': '/var/www',
 'GATEWAY_INTERFACE': 'CGI/1.1',
 'HTTP_ACCEPT': 'text/html, */*',
 'HTTP_ACCEPT_ENCODING': 'gzip, deflate',
 'HTTP_ACCEPT_LANGUAGE': 'en-us',
 'HTTP_CONNECTION': 'keep-alive',
 'HTTP_COOKIE': 'sessionid=6d1150ef8a8d3f4c80a068dc92fb9948',
 'HTTP_HOST': 'gretzky.openmicroscopy.org.uk',
 'HTTP_REFERER': 'http://gretzky.openmicroscopy.org.uk/webclient/userdata/?path=project=17196|dataset=17554|image=25164:selected',
 'HTTP_USER_AGENT': 'Mozilla/5.0 (Macintosh; U; Intel Mac OS X 10_6_7; en-us) AppleWebKit/533.21.1 (KHTML, like Gecko) Version/5.0.5 Safari/533.21.1',
 'HTTP_X_REQUESTED_WITH': 'XMLHttpRequest',
 'PATH': '/usr/local/bin:/usr/bin:/bin',
 'PATH_INFO': u'/webclient/load_data/plate/867/acquisition/723/',
 'PATH_TRANSLATED': '/var/www/omero.fcgi/webclient/load_data/plate/867/acquisition/723/',
 'QUERY_STRING': '',
 'REMOTE_ADDR': '10.12.2.226',
 'REMOTE_PORT': '60491',
 'REQUEST_METHOD': 'GET',
 'REQUEST_URI': '/webclient/load_data/plate/867/acquisition/723/',
 'SCRIPT_FILENAME': '/var/www/omero.fcgi',
 'SCRIPT_NAME': u'',
 'SERVER_ADDR': '134.36.65.227',
 'SERVER_ADMIN': 'webmaster@localhost',
 'SERVER_NAME': 'gretzky.openmicroscopy.org.uk',
 'SERVER_PORT': '80',
 'SERVER_PROTOCOL': 'HTTP/1.1',
 'SERVER_SIGNATURE': '<address>Apache/2.2.14 (Ubuntu) Server at gretzky.openmicroscopy.org.uk Port 80</address>\n',
 'SERVER_SOFTWARE': 'Apache/2.2.14 (Ubuntu)',
 'wsgi.errors': <flup.server.fcgi_base.TeeOutputStream object at 0x3875250>,
 'wsgi.input': <flup.server.fcgi_base.InputStream object at 0x38751d0>,
 'wsgi.multiprocess': True,
 'wsgi.multithread': False,
 'wsgi.run_once': False,
 'wsgi.url_scheme': 'http',
 'wsgi.version': (1, 0)}>

Change History (7)

comment:1 Changed 13 years ago by atarkowska

  • Sprint set to 2011-09-15 (5)

comment:2 Changed 13 years ago by atarkowska

  • Remaining Time set to 0.5

comment:3 Changed 13 years ago by Aleksandra Tarkowska <atarkowska@…>

  • Remaining Time changed from 0.5 to 0
  • Resolution set to fixed
  • Status changed from new to closed

(In [a531ded7a7aee5113092af15c053a27dfdcb5f9a/ome.git] on branch develop) this fixes fields form error, close #6619

comment:4 Changed 13 years ago by atarkowska

  • Resolution fixed deleted
  • Status changed from closed to reopened

comment:5 Changed 13 years ago by atarkowska

  • Cc atarkowska added
  • Owner changed from atarkowska to jburel
  • Remaining Time 0 deleted
  • Status changed from reopened to accepted

It seams that plate 867 owned by scott (gretzky) is corrupted. There is one plate acquisition, but no well samples linked to it. Insight does not display it at all.

comment:6 Changed 13 years ago by saloynton

To confirm this is the plate from test_images_good/cellworx/hms/plate1

comment:7 Changed 13 years ago by jburel

  • Resolution set to fixed
  • Status changed from accepted to closed
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