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Task #8898 (closed)

Opened 12 years ago

Closed 12 years ago

Bug: Image viewer/projection

Reported by: saloynton Owned by: jamoore
Priority: major Milestone: OMERO-4.4
Component: Scripting Version: n.a.
Keywords: n.a. Cc: rleigh, jamoore, wmoore, jburel
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2012-06-19 (17)

Description

Not possible to create a projection: "An error occurred while creating the projected image".

  • OMERO.insight-4.3.3-2195-6bc6897-ice33-b151-mac
  • tested by Roger
  • Again has since been reproduced on OMERO.insight-4.3.3-..> 21-May-2012 11:08

An error occurred while creating the projected image" in Insight. (Using the "Project…" button and selecting a range)
This is in private-1, project "Play 21-05-12", dataset "LSM", file "vessels.lsm"

Attachments (2)

omero log.rtf​ (15.7 KB) - added by saloynton 12 years ago.
omeroinsight-2012-06-11.log​ (20.9 KB) - added by bpindelski 12 years ago.

Download all attachments as: .zip

Change History (13)

comment:1 Changed 12 years ago by jburel

  • Component changed from Insight to Scripting
  • Priority changed from minor to major

As indicating in the google doc I don't think it is an insight specific problem. Changing component.

comment:2 Changed 12 years ago by jburel

  • Owner jburel deleted

comment:3 Changed 12 years ago by wmoore

If this is the same issue as #8880, I don't see any link to Scripting. This is just using the renderProjected rendering engine API, right?

comment:4 Changed 12 years ago by jburel

  • Cc wmoore added

comment:5 Changed 12 years ago by jmoore

  • Owner set to jmoore
  • Remaining Time set to 0.25
  • Sprint set to 2012-06-19 (17)
  • Status changed from new to accepted

Changed 12 years ago by saloynton

comment:6 Changed 12 years ago by rleigh

Log from failure:

2012-06-08 14:55:07,661 WARN  [                 ome.system.UpgradeCheck] (nitializer) UPGRADE AVAILABLE:Please upgrade to Beta-4.3.4 See http://trac.openmicroscopy.org.uk/omero for the latest version
2012-06-08 14:55:07,772 INFO  [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 496697344
2012-06-08 14:55:07,856 INFO  [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: javax.swing.plaf.metal.MetalLookAndFeel
2012-06-08 14:55:20,765 INFO  [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.3.3
Client version: 4.3.3-3023-3bbdef2-ice33-b87
os_name: Linux
os_arch: amd64
java_version: 1.6.0_24
os_version: 3.2.0-2-amd64

2012-06-08 14:55:23,172 INFO  [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: howe.openmicroscopy.org.uk
User Name: user-5 -- Password: ***

2012-06-08 14:55:25,864 ERROR [opy.shoola.agents.treeviewer.IconManager] (nitializer) Failed to retrieve icon: <classpath>/org/openmicroscopy/shoola/agents/treeviewer/graphx/public_read16.png.
2012-06-08 14:55:25,868 ERROR [opy.shoola.agents.treeviewer.IconManager] (nitializer) Failed to retrieve icon: <classpath>/org/openmicroscopy/shoola/agents/treeviewer/graphx/public_read16.png.
2012-06-08 14:55:27,908 ERROR [opy.shoola.agents.treeviewer.IconManager] (nitializer) Failed to retrieve icon: <classpath>/org/openmicroscopy/shoola/agents/treeviewer/graphx/public_read16.png.
2012-06-08 14:55:27,909 ERROR [opy.shoola.agents.treeviewer.IconManager] (nitializer) Failed to retrieve icon: <classpath>/org/openmicroscopy/shoola/agents/treeviewer/graphx/public_read16.png.
2012-06-08 14:56:26,568 ERROR [y.shoola.agents.imviewer.ProjectionSaver] (entQueue-0) Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot project the image.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.projectImage(OMEROGateway.java:5334)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.projectImage(OmeroImageServiceImpl.java:920)
	at org.openmicroscopy.shoola.env.data.views.calls.ProjectionSaver$2.doCall(ProjectionSaver.java:110)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:679)
Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot access the Projection service.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getProjectionService(OMEROGateway.java:1831)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.projectImage(OMEROGateway.java:5312)
	... 9 more
Caused by: org.openmicroscopy.shoola.env.data.DSOutOfServiceException: Cannot access the Projection service.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getProjectionService(OMEROGateway.java:1827)
	... 10 more
Data Retrieval Failure: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot project the image.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.projectImage(OMEROGateway.java:5334)
	at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.projectImage(OmeroImageServiceImpl.java:920)
	at org.openmicroscopy.shoola.env.data.views.calls.ProjectionSaver$2.doCall(ProjectionSaver.java:110)
	at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
	at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
	at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
	at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
	at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
	at java.lang.Thread.run(Thread.java:679)
Caused by: org.openmicroscopy.shoola.env.data.DSAccessException: Cannot access data. 
Cannot access the Projection service.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.handleException(OMEROGateway.java:887)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getProjectionService(OMEROGateway.java:1831)
	at org.openmicroscopy.shoola.env.data.OMEROGateway.projectImage(OMEROGateway.java:5312)
	... 9 more
Caused by: org.openmicroscopy.shoola.env.data.DSOutOfServiceException: Cannot access the Projection service.
	at org.openmicroscopy.shoola.env.data.OMEROGateway.getProjectionService(OMEROGateway.java:1827)
	... 10 more
Exception in thread "AWT-EventQueue-0"

comment:7 Changed 12 years ago by jburel

  • Cc jburel added

I need to check too if the service is accessed correctly in insight

comment:8 Changed 12 years ago by jmoore

It's not, but I'm committing a fix. Don't worry about it.

comment:9 Changed 12 years ago by jmoore

  • Remaining Time changed from 0.25 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

Fix pushed to sprint17:

commit a856e8368ffda15c814d9fc6c8df8dae4fbe36cf
Author: jmoore <josh@glencoesoftware.com>
Date:   Fri Jun 8 16:04:18 2012

    Don't return null for projService (Fix #8898)

Changed 12 years ago by bpindelski

comment:10 Changed 12 years ago by bpindelski

  • Resolution fixed deleted
  • Status changed from closed to reopened

Still fails. Now instead of an error message, it displays a QA window. omeroinsight-2012-06-11.log attached.

comment:11 Changed 12 years ago by jmoore

  • Resolution set to fixed
  • Status changed from reopened to closed

That looks to be the same as #8818. Re-closing since it's no longer the NPE.

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