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Ticket #6415: insight_log.txt

File insight_log.txt, 255.7 KB (added by atarkowska, 13 years ago)
Line 
12011-08-05 09:57:06,104 INFO  [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 129957888
22011-08-05 09:57:06,123 INFO  [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel
32011-08-05 09:57:16,383 INFO  [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.3.2
4Client version: Beta4.3.2-DEV
5os_name: Mac OS X
6os_arch: x86_64
7java_version: 1.6.0_26
8os_version: 10.6.8
9
102011-08-05 09:57:16,558 INFO  [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: localhost
11User Name: ola -- Password: ***
12
132011-08-05 09:57:55,405 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
142011-08-05 09:57:55,406 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
152011-08-05 09:57:55,451 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
162011-08-05 09:57:55,611 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
172011-08-05 09:57:55,612 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
182011-08-05 09:57:55,624 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
192011-08-05 09:57:56,699 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
202011-08-05 09:57:56,700 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
212011-08-05 09:57:56,702 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
222011-08-05 09:57:56,762 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
232011-08-05 09:57:56,763 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
242011-08-05 09:57:56,764 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
252011-08-05 09:57:56,816 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
262011-08-05 09:57:56,816 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
272011-08-05 09:57:56,818 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
282011-08-05 09:57:56,866 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
292011-08-05 09:57:56,867 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
302011-08-05 09:57:56,868 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
312011-08-05 09:57:56,910 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
322011-08-05 09:57:56,911 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
332011-08-05 09:57:56,912 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
342011-08-05 09:57:56,957 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
352011-08-05 09:57:56,958 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
362011-08-05 09:57:56,959 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
372011-08-05 09:57:57,002 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
382011-08-05 09:57:57,003 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
392011-08-05 09:57:57,004 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
402011-08-05 09:57:57,045 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
412011-08-05 09:57:57,046 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
422011-08-05 09:57:57,047 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
432011-08-05 09:57:57,099 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
442011-08-05 09:57:57,100 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
452011-08-05 09:57:57,101 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
462011-08-05 09:57:57,154 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
472011-08-05 09:57:57,154 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
482011-08-05 09:57:57,156 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
492011-08-05 09:57:57,197 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
502011-08-05 09:57:57,198 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
512011-08-05 09:57:57,199 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
522011-08-05 09:57:57,203 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 12 file(s) parsed into 12 group(s) with 12 call(s) to setId in 1740ms. (1752ms total) [0 unknowns]
532011-08-05 09:57:57,869 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
542011-08-05 09:57:57,869 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
552011-08-05 09:57:58,002 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
562011-08-05 09:57:58,003 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
572011-08-05 09:57:58,015 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
582011-08-05 09:57:58,350 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
592011-08-05 09:57:58,377 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
602011-08-05 09:57:58,382 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
612011-08-05 09:57:58,382 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
622011-08-05 09:57:58,382 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
632011-08-05 09:57:58,382 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
642011-08-05 09:57:58,382 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
652011-08-05 09:57:58,382 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
662011-08-05 09:57:58,395 DEBUG [              omero.util.TempFileManager] ( Thread-19) Chose global tmpdir:  /Users/ola
672011-08-05 09:57:58,397 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT69338549693406531845ab23ee6-1d10-41dd-bf9b-7dd697de2c7d
682011-08-05 09:57:58,420 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
692011-08-05 09:58:02,022 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
702011-08-05 09:58:02,022 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
712011-08-05 09:58:02,132 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
722011-08-05 09:58:02,132 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
732011-08-05 09:58:02,148 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
742011-08-05 09:58:02,158 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
752011-08-05 09:58:02,158 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
762011-08-05 09:58:02,162 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
772011-08-05 09:58:02,162 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
782011-08-05 09:58:02,162 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
792011-08-05 09:58:02,162 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
802011-08-05 09:58:02,162 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
812011-08-05 09:58:02,162 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
822011-08-05 09:58:02,163 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2027736067606914475e6d8418d-9161-4196-8358-5c7287006d70
832011-08-05 09:58:02,166 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
842011-08-05 09:58:03,661 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
852011-08-05 09:58:03,661 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
862011-08-05 09:58:03,999 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
872011-08-05 09:58:03,999 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
882011-08-05 09:58:04,008 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
892011-08-05 09:58:04,017 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
902011-08-05 09:58:04,017 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
912011-08-05 09:58:04,026 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
922011-08-05 09:58:04,026 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
932011-08-05 09:58:04,026 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
942011-08-05 09:58:04,026 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
952011-08-05 09:58:04,026 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
962011-08-05 09:58:04,026 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
972011-08-05 09:58:04,027 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT80869617923521526703fc5b140-055c-49f8-8dcb-8c76df2b4f9c
982011-08-05 09:58:04,030 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
992011-08-05 09:58:05,522 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
1002011-08-05 09:58:05,522 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
1012011-08-05 09:58:05,668 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
1022011-08-05 09:58:05,668 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
1032011-08-05 09:58:05,678 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
1042011-08-05 09:58:05,713 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
1052011-08-05 09:58:05,713 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
1062011-08-05 09:58:05,719 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
1072011-08-05 09:58:05,719 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
1082011-08-05 09:58:05,719 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
1092011-08-05 09:58:05,719 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
1102011-08-05 09:58:05,719 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
1112011-08-05 09:58:05,720 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
1122011-08-05 09:58:05,721 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT46887107403984983294e03a488-bd56-4209-ae6a-49ff260d0491
1132011-08-05 09:58:05,722 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
1142011-08-05 09:58:06,893 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
1152011-08-05 09:58:06,893 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
1162011-08-05 09:58:06,991 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
1172011-08-05 09:58:06,992 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
1182011-08-05 09:58:07,007 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
1192011-08-05 09:58:07,011 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
1202011-08-05 09:58:07,011 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
1212011-08-05 09:58:07,014 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
1222011-08-05 09:58:07,014 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
1232011-08-05 09:58:07,014 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
1242011-08-05 09:58:07,014 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
1252011-08-05 09:58:07,014 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
1262011-08-05 09:58:07,015 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
1272011-08-05 09:58:07,015 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT1768133913136557338cdc7e24d-ae14-4613-8a31-59978a98b74e
1282011-08-05 09:58:07,016 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
1292011-08-05 09:58:08,249 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
1302011-08-05 09:58:08,249 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
1312011-08-05 09:58:08,491 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
1322011-08-05 09:58:08,491 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
1332011-08-05 09:58:08,501 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
1342011-08-05 09:58:08,514 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
1352011-08-05 09:58:08,514 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
1362011-08-05 09:58:08,517 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
1372011-08-05 09:58:08,517 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
1382011-08-05 09:58:08,518 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
1392011-08-05 09:58:08,518 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
1402011-08-05 09:58:08,518 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
1412011-08-05 09:58:08,518 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
1422011-08-05 09:58:08,518 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT8447453568025925330c4059f73-39bd-4907-b2e2-36a834ebc617
1432011-08-05 09:58:08,520 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
1442011-08-05 09:58:11,057 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
1452011-08-05 09:58:11,057 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
1462011-08-05 09:58:11,268 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
1472011-08-05 09:58:11,269 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
1482011-08-05 09:58:11,278 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
1492011-08-05 09:58:11,325 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
1502011-08-05 09:58:11,325 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
1512011-08-05 09:58:11,328 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
1522011-08-05 09:58:11,328 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
1532011-08-05 09:58:11,328 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
1542011-08-05 09:58:11,328 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
1552011-08-05 09:58:11,328 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
1562011-08-05 09:58:11,328 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
1572011-08-05 09:58:11,328 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT1374473577701119695ede41547-b7a8-4c81-bc18-9425e851c615
1582011-08-05 09:58:11,330 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
1592011-08-05 09:58:12,977 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
1602011-08-05 09:58:12,977 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
1612011-08-05 09:58:13,086 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
1622011-08-05 09:58:13,087 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
1632011-08-05 09:58:13,095 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
1642011-08-05 09:58:13,099 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
1652011-08-05 09:58:13,099 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
1662011-08-05 09:58:13,105 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
1672011-08-05 09:58:13,105 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
1682011-08-05 09:58:13,105 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
1692011-08-05 09:58:13,105 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
1702011-08-05 09:58:13,105 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
1712011-08-05 09:58:13,106 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
1722011-08-05 09:58:13,106 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT830542249369778330c4fd4f8-1d42-4d13-aadc-2dc0efa1d980
1732011-08-05 09:58:13,107 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
1742011-08-05 09:58:14,063 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
1752011-08-05 09:58:14,063 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
1762011-08-05 09:58:14,174 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
1772011-08-05 09:58:14,175 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
1782011-08-05 09:58:14,195 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
1792011-08-05 09:58:14,199 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
1802011-08-05 09:58:14,199 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
1812011-08-05 09:58:14,202 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
1822011-08-05 09:58:14,202 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
1832011-08-05 09:58:14,202 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
1842011-08-05 09:58:14,202 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
1852011-08-05 09:58:14,202 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
1862011-08-05 09:58:14,202 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
1872011-08-05 09:58:14,203 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT394603094415261286577c7ec1c-915a-4707-939d-d185f4778451
1882011-08-05 09:58:14,204 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
1892011-08-05 09:58:15,272 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
1902011-08-05 09:58:15,272 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
1912011-08-05 09:58:15,393 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
1922011-08-05 09:58:15,394 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
1932011-08-05 09:58:15,403 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
1942011-08-05 09:58:15,406 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
1952011-08-05 09:58:15,407 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
1962011-08-05 09:58:15,411 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
1972011-08-05 09:58:15,411 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
1982011-08-05 09:58:15,411 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
1992011-08-05 09:58:15,411 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
2002011-08-05 09:58:15,412 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
2012011-08-05 09:58:15,415 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
2022011-08-05 09:58:15,416 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT6281012741952240861883f8007-642f-4f08-8bab-bacb3fb0ba01
2032011-08-05 09:58:15,417 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
2042011-08-05 09:58:16,439 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
2052011-08-05 09:58:16,439 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
2062011-08-05 09:58:16,533 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
2072011-08-05 09:58:16,533 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
2082011-08-05 09:58:16,543 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
2092011-08-05 09:58:16,547 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
2102011-08-05 09:58:16,548 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
2112011-08-05 09:58:16,551 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
2122011-08-05 09:58:16,551 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
2132011-08-05 09:58:16,551 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
2142011-08-05 09:58:16,551 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
2152011-08-05 09:58:16,551 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
2162011-08-05 09:58:16,551 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
2172011-08-05 09:58:16,552 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT9065926505820263443d7910627-12ac-4105-bf01-2d83e48eec33
2182011-08-05 09:58:16,553 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
2192011-08-05 09:58:17,483 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
2202011-08-05 09:58:17,483 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
2212011-08-05 09:58:17,582 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
2222011-08-05 09:58:17,582 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
2232011-08-05 09:58:17,594 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
2242011-08-05 09:58:17,597 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
2252011-08-05 09:58:17,597 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
2262011-08-05 09:58:17,600 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
2272011-08-05 09:58:17,600 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
2282011-08-05 09:58:17,600 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
2292011-08-05 09:58:17,600 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
2302011-08-05 09:58:17,600 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
2312011-08-05 09:58:17,601 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
2322011-08-05 09:58:17,601 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT7047569542846266443d381823f-a2e2-4d9f-af82-b61e398f1e40
2332011-08-05 09:58:17,602 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
2342011-08-05 09:58:18,572 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
2352011-08-05 09:58:18,572 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
2362011-08-05 09:58:18,573 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
2372011-08-05 09:58:18,626 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
2382011-08-05 09:58:18,626 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
2392011-08-05 09:58:18,627 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
2402011-08-05 09:58:18,629 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 55ms. (56ms total) [0 unknowns]
2412011-08-05 09:58:18,639 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
2422011-08-05 09:58:18,639 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
2432011-08-05 09:58:18,724 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
2442011-08-05 09:58:18,725 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
2452011-08-05 09:58:18,732 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
2462011-08-05 09:58:18,740 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
2472011-08-05 09:58:18,740 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
2482011-08-05 09:58:18,740 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
2492011-08-05 09:58:18,740 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
2502011-08-05 09:58:18,740 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
2512011-08-05 09:58:18,740 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
2522011-08-05 09:58:18,741 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3240821456824130881a5145eb9-9a49-46bd-b8e3-2b7429c46fdd
2532011-08-05 09:58:18,743 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
2542011-08-05 09:58:19,863 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
2552011-08-05 09:58:19,863 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
2562011-08-05 09:58:19,864 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
2572011-08-05 09:58:19,898 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
2582011-08-05 09:58:19,898 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
2592011-08-05 09:58:19,899 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
2602011-08-05 09:58:19,901 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 36ms. (37ms total) [0 unknowns]
2612011-08-05 09:58:19,920 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
2622011-08-05 09:58:19,920 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
2632011-08-05 09:58:20,006 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
2642011-08-05 09:58:20,006 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
2652011-08-05 09:58:20,012 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
2662011-08-05 09:58:20,019 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
2672011-08-05 09:58:20,019 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
2682011-08-05 09:58:20,019 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
2692011-08-05 09:58:20,019 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
2702011-08-05 09:58:20,019 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
2712011-08-05 09:58:20,019 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
2722011-08-05 09:58:20,019 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT81571483932804566366ca0e555-0470-418c-8673-0e4b6c76eb4b
2732011-08-05 09:58:20,021 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
2742011-08-05 09:58:21,680 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
2752011-08-05 09:58:21,680 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
2762011-08-05 09:58:21,681 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
2772011-08-05 09:58:21,720 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
2782011-08-05 09:58:21,720 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
2792011-08-05 09:58:21,721 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
2802011-08-05 09:58:21,723 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 42ms. (42ms total) [0 unknowns]
2812011-08-05 09:58:21,751 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
2822011-08-05 09:58:21,751 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
2832011-08-05 09:58:21,864 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
2842011-08-05 09:58:21,865 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
2852011-08-05 09:58:21,880 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
2862011-08-05 09:58:21,887 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
2872011-08-05 09:58:21,887 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
2882011-08-05 09:58:21,887 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
2892011-08-05 09:58:21,887 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
2902011-08-05 09:58:21,887 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
2912011-08-05 09:58:21,887 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
2922011-08-05 09:58:21,887 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4724993049472753488a66e2230-348c-4a75-80ee-b1f89f9ee1cd
2932011-08-05 09:58:21,889 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
2942011-08-05 09:58:23,172 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
2952011-08-05 09:58:23,172 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
2962011-08-05 09:58:23,173 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
2972011-08-05 09:58:23,231 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
2982011-08-05 09:58:23,231 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
2992011-08-05 09:58:23,232 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
3002011-08-05 09:58:23,239 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 66ms. (66ms total) [0 unknowns]
3012011-08-05 09:58:23,249 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
3022011-08-05 09:58:23,249 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
3032011-08-05 09:58:23,344 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
3042011-08-05 09:58:23,344 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
3052011-08-05 09:58:23,380 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
3062011-08-05 09:58:23,388 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
3072011-08-05 09:58:23,388 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
3082011-08-05 09:58:23,388 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
3092011-08-05 09:58:23,388 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
3102011-08-05 09:58:23,388 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
3112011-08-05 09:58:23,388 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
3122011-08-05 09:58:23,389 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT553054216874239150190c9abe6-c5dd-4914-b9eb-076b7a479f90
3132011-08-05 09:58:23,391 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
3142011-08-05 09:58:24,573 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
3152011-08-05 09:58:24,573 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
3162011-08-05 09:58:24,574 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
3172011-08-05 09:58:24,605 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
3182011-08-05 09:58:24,606 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
3192011-08-05 09:58:24,606 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
3202011-08-05 09:58:24,608 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 34ms. (34ms total) [0 unknowns]
3212011-08-05 09:58:24,618 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
3222011-08-05 09:58:24,618 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
3232011-08-05 09:58:24,701 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
3242011-08-05 09:58:24,702 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
3252011-08-05 09:58:24,708 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
3262011-08-05 09:58:24,714 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
3272011-08-05 09:58:24,714 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
3282011-08-05 09:58:24,714 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
3292011-08-05 09:58:24,714 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
3302011-08-05 09:58:24,714 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
3312011-08-05 09:58:24,714 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
3322011-08-05 09:58:24,714 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT80443521466433307204eb4f1c9-74fe-48e1-b66e-ea0762cfa973
3332011-08-05 09:58:24,716 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
3342011-08-05 09:58:25,804 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
3352011-08-05 09:58:25,804 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
3362011-08-05 09:58:25,805 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
3372011-08-05 09:58:25,840 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
3382011-08-05 09:58:25,840 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
3392011-08-05 09:58:25,841 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
3402011-08-05 09:58:25,843 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 37ms. (38ms total) [0 unknowns]
3412011-08-05 09:58:25,854 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
3422011-08-05 09:58:25,854 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
3432011-08-05 09:58:25,942 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
3442011-08-05 09:58:25,943 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
3452011-08-05 09:58:25,949 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
3462011-08-05 09:58:25,956 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
3472011-08-05 09:58:25,956 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
3482011-08-05 09:58:25,956 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
3492011-08-05 09:58:25,956 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
3502011-08-05 09:58:25,956 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
3512011-08-05 09:58:25,956 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
3522011-08-05 09:58:25,956 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT552165703689480354275098aa1-36be-4edd-afb8-b609b1fc38ba
3532011-08-05 09:58:25,958 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
3542011-08-05 09:58:27,027 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
3552011-08-05 09:58:27,028 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
3562011-08-05 09:58:27,028 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
3572011-08-05 09:58:27,096 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
3582011-08-05 09:58:27,096 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
3592011-08-05 09:58:27,097 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
3602011-08-05 09:58:27,099 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 70ms. (71ms total) [0 unknowns]
3612011-08-05 09:58:27,109 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
3622011-08-05 09:58:27,109 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
3632011-08-05 09:58:27,195 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
3642011-08-05 09:58:27,195 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
3652011-08-05 09:58:27,201 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
3662011-08-05 09:58:27,207 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
3672011-08-05 09:58:27,207 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
3682011-08-05 09:58:27,207 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
3692011-08-05 09:58:27,207 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
3702011-08-05 09:58:27,207 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
3712011-08-05 09:58:27,207 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
3722011-08-05 09:58:27,207 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT156951100609302598580b93a63-566c-46b1-9acd-35e1c0e4dcd6
3732011-08-05 09:58:27,209 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
3742011-08-05 09:58:28,505 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
3752011-08-05 09:58:28,505 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
3762011-08-05 09:58:28,506 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
3772011-08-05 09:58:28,541 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
3782011-08-05 09:58:28,542 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
3792011-08-05 09:58:28,543 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
3802011-08-05 09:58:28,551 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 44ms. (44ms total) [0 unknowns]
3812011-08-05 09:58:28,565 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
3822011-08-05 09:58:28,565 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
3832011-08-05 09:58:28,683 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
3842011-08-05 09:58:28,684 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
3852011-08-05 09:58:28,690 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
3862011-08-05 09:58:28,696 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
3872011-08-05 09:58:28,697 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
3882011-08-05 09:58:28,697 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
3892011-08-05 09:58:28,697 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
3902011-08-05 09:58:28,697 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
3912011-08-05 09:58:28,697 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
3922011-08-05 09:58:28,697 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3860391750674074177d8686353-87cd-4f17-ba47-971ee2f05ffa
3932011-08-05 09:58:28,699 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
3942011-08-05 09:58:31,145 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
3952011-08-05 09:58:31,145 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
3962011-08-05 09:58:31,146 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
3972011-08-05 09:58:31,195 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
3982011-08-05 09:58:31,196 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
3992011-08-05 09:58:31,197 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4002011-08-05 09:58:31,199 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 51ms. (53ms total) [0 unknowns]
4012011-08-05 09:58:31,291 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
4022011-08-05 09:58:31,291 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
4032011-08-05 09:58:31,500 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4042011-08-05 09:58:31,500 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4052011-08-05 09:58:31,512 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4062011-08-05 09:58:31,532 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
4072011-08-05 09:58:31,532 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
4082011-08-05 09:58:31,532 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
4092011-08-05 09:58:31,532 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
4102011-08-05 09:58:31,532 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
4112011-08-05 09:58:31,532 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
4122011-08-05 09:58:31,533 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2833904789297605436276fa26e-30f9-4ee2-b8c8-d3d63952537a
4132011-08-05 09:58:31,535 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
4142011-08-05 09:58:32,774 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
4152011-08-05 09:58:32,774 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
4162011-08-05 09:58:32,775 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
4172011-08-05 09:58:32,826 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4182011-08-05 09:58:32,827 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4192011-08-05 09:58:32,827 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4202011-08-05 09:58:32,829 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 53ms. (54ms total) [0 unknowns]
4212011-08-05 09:58:32,841 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
4222011-08-05 09:58:32,841 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
4232011-08-05 09:58:32,923 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4242011-08-05 09:58:32,923 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4252011-08-05 09:58:32,929 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4262011-08-05 09:58:32,935 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
4272011-08-05 09:58:32,935 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
4282011-08-05 09:58:32,935 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
4292011-08-05 09:58:32,935 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
4302011-08-05 09:58:32,935 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
4312011-08-05 09:58:32,935 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
4322011-08-05 09:58:32,936 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT68092700690642824434a9dee0f-553a-4e82-a217-bcbd2fb3332d
4332011-08-05 09:58:32,937 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
4342011-08-05 09:58:34,523 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
4352011-08-05 09:58:34,523 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
4362011-08-05 09:58:34,524 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
4372011-08-05 09:58:34,558 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4382011-08-05 09:58:34,558 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4392011-08-05 09:58:34,559 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4402011-08-05 09:58:34,561 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 1 file(s) parsed into 1 group(s) with 1 call(s) to setId in 36ms. (37ms total) [0 unknowns]
4412011-08-05 09:58:34,571 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
4422011-08-05 09:58:34,571 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
4432011-08-05 09:58:34,681 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4442011-08-05 09:58:34,682 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4452011-08-05 09:58:34,689 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4462011-08-05 09:58:34,695 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
4472011-08-05 09:58:34,695 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
4482011-08-05 09:58:34,695 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
4492011-08-05 09:58:34,695 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
4502011-08-05 09:58:34,695 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
4512011-08-05 09:58:34,695 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
4522011-08-05 09:58:34,695 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT457722922633277197483fb7450-3e85-4307-81f4-8b36d953338a
4532011-08-05 09:58:34,697 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
4542011-08-05 09:58:35,970 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
4552011-08-05 09:58:35,970 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
4562011-08-05 09:58:35,971 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) Depth: 4 Metadata Level: MINIMUM
4572011-08-05 09:58:36,062 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4582011-08-05 09:58:36,063 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4592011-08-05 09:58:36,063 INFO  [              loci.formats.in.TiffReader] ( Thread-19) Checking comment style
4602011-08-05 09:58:36,064 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4612011-08-05 09:58:36,126 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4622011-08-05 09:58:36,127 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4632011-08-05 09:58:36,127 INFO  [              loci.formats.in.TiffReader] ( Thread-19) Checking comment style
4642011-08-05 09:58:36,127 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4652011-08-05 09:58:36,196 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4662011-08-05 09:58:36,196 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4672011-08-05 09:58:36,197 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4682011-08-05 09:58:36,254 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4692011-08-05 09:58:36,254 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4702011-08-05 09:58:36,255 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4712011-08-05 09:58:36,286 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4722011-08-05 09:58:36,286 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4732011-08-05 09:58:36,287 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4742011-08-05 09:58:36,358 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4752011-08-05 09:58:36,359 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4762011-08-05 09:58:36,360 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4772011-08-05 09:58:36,390 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4782011-08-05 09:58:36,390 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4792011-08-05 09:58:36,391 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4802011-08-05 09:58:36,422 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4812011-08-05 09:58:36,422 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4822011-08-05 09:58:36,423 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4832011-08-05 09:58:36,454 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4842011-08-05 09:58:36,454 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4852011-08-05 09:58:36,455 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4862011-08-05 09:58:36,488 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4872011-08-05 09:58:36,488 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4882011-08-05 09:58:36,489 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4892011-08-05 09:58:36,562 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4902011-08-05 09:58:36,563 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4912011-08-05 09:58:36,564 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4922011-08-05 09:58:36,607 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4932011-08-05 09:58:36,607 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4942011-08-05 09:58:36,608 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4952011-08-05 09:58:36,659 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4962011-08-05 09:58:36,661 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
4972011-08-05 09:58:36,662 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
4982011-08-05 09:58:36,701 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
4992011-08-05 09:58:36,701 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5002011-08-05 09:58:36,702 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5012011-08-05 09:58:36,749 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5022011-08-05 09:58:36,749 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5032011-08-05 09:58:36,760 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5042011-08-05 09:58:36,804 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5052011-08-05 09:58:36,805 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5062011-08-05 09:58:36,806 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5072011-08-05 09:58:36,842 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5082011-08-05 09:58:36,843 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5092011-08-05 09:58:36,844 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5102011-08-05 09:58:36,886 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5112011-08-05 09:58:36,887 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5122011-08-05 09:58:36,888 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5132011-08-05 09:58:36,929 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5142011-08-05 09:58:36,929 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5152011-08-05 09:58:36,930 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5162011-08-05 09:58:36,972 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5172011-08-05 09:58:36,973 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5182011-08-05 09:58:36,974 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5192011-08-05 09:58:37,020 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5202011-08-05 09:58:37,021 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5212011-08-05 09:58:37,022 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5222011-08-05 09:58:37,075 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5232011-08-05 09:58:37,075 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5242011-08-05 09:58:37,077 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5252011-08-05 09:58:37,142 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5262011-08-05 09:58:37,145 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5272011-08-05 09:58:37,149 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5282011-08-05 09:58:37,208 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5292011-08-05 09:58:37,208 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5302011-08-05 09:58:37,210 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5312011-08-05 09:58:37,265 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5322011-08-05 09:58:37,265 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5332011-08-05 09:58:37,271 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5342011-08-05 09:58:37,317 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5352011-08-05 09:58:37,317 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5362011-08-05 09:58:37,317 INFO  [              loci.formats.in.TiffReader] ( Thread-19) Checking comment style
5372011-08-05 09:58:37,318 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5382011-08-05 09:58:37,382 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5392011-08-05 09:58:37,382 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5402011-08-05 09:58:37,383 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5412011-08-05 09:58:37,428 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5422011-08-05 09:58:37,428 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5432011-08-05 09:58:37,429 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5442011-08-05 09:58:37,484 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5452011-08-05 09:58:37,484 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5462011-08-05 09:58:37,487 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5472011-08-05 09:58:37,569 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5482011-08-05 09:58:37,569 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5492011-08-05 09:58:37,569 INFO  [              loci.formats.in.TiffReader] ( Thread-19) Checking comment style
5502011-08-05 09:58:37,575 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5512011-08-05 09:58:37,593 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-19) 31 file(s) parsed into 30 group(s) with 30 call(s) to setId in 1594ms. (1622ms total) [0 unknowns]
5522011-08-05 09:58:37,696 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
5532011-08-05 09:58:37,696 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
5542011-08-05 09:58:37,849 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5552011-08-05 09:58:37,850 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5562011-08-05 09:58:37,895 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5572011-08-05 09:58:37,900 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
5582011-08-05 09:58:37,900 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
5592011-08-05 09:58:37,903 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
5602011-08-05 09:58:37,903 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
5612011-08-05 09:58:37,903 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
5622011-08-05 09:58:37,903 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
5632011-08-05 09:58:37,903 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
5642011-08-05 09:58:37,903 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
5652011-08-05 09:58:37,903 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT6361018795115924038fa37bebf-1bf7-4d4a-9773-43bff7e08745
5662011-08-05 09:58:37,904 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
5672011-08-05 09:58:39,580 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
5682011-08-05 09:58:39,580 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
5692011-08-05 09:58:39,678 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5702011-08-05 09:58:39,678 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5712011-08-05 09:58:39,684 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5722011-08-05 09:58:39,693 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
5732011-08-05 09:58:39,693 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
5742011-08-05 09:58:39,693 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
5752011-08-05 09:58:39,693 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
5762011-08-05 09:58:39,693 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
5772011-08-05 09:58:39,693 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
5782011-08-05 09:58:39,693 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2826986435444652475722ca8f8-71c1-448c-a718-0f8d414566f7
5792011-08-05 09:58:39,695 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
5802011-08-05 09:58:40,858 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
5812011-08-05 09:58:40,858 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
5822011-08-05 09:58:40,948 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5832011-08-05 09:58:40,948 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5842011-08-05 09:58:40,962 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
5852011-08-05 09:58:40,966 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
5862011-08-05 09:58:40,966 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
5872011-08-05 09:58:40,969 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
5882011-08-05 09:58:40,969 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
5892011-08-05 09:58:40,969 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
5902011-08-05 09:58:40,969 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
5912011-08-05 09:58:40,969 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
5922011-08-05 09:58:40,969 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
5932011-08-05 09:58:40,970 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT1775833342783609081c9730e57-7b58-460c-a38f-e3872f25d5d5
5942011-08-05 09:58:40,972 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
5952011-08-05 09:58:41,933 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
5962011-08-05 09:58:41,933 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
5972011-08-05 09:58:42,034 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
5982011-08-05 09:58:42,034 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
5992011-08-05 09:58:42,040 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
6002011-08-05 09:58:42,043 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
6012011-08-05 09:58:42,043 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
6022011-08-05 09:58:42,046 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
6032011-08-05 09:58:42,046 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
6042011-08-05 09:58:42,046 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
6052011-08-05 09:58:42,046 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
6062011-08-05 09:58:42,046 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
6072011-08-05 09:58:42,046 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
6082011-08-05 09:58:42,047 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT425374656643426671c0b4467a-6f97-47fa-b65c-9107a70bd4bd
6092011-08-05 09:58:42,048 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
6102011-08-05 09:58:43,095 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
6112011-08-05 09:58:43,095 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
6122011-08-05 09:58:43,219 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
6132011-08-05 09:58:43,219 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
6142011-08-05 09:58:43,220 INFO  [              loci.formats.in.TiffReader] ( Thread-19) Checking comment style
6152011-08-05 09:58:43,220 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
6162011-08-05 09:58:43,239 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Tagged Image File Format
6172011-08-05 09:58:43,239 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.TiffDelegateReader
6182011-08-05 09:58:43,239 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
6192011-08-05 09:58:43,239 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
6202011-08-05 09:58:43,239 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
6212011-08-05 09:58:43,240 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
6222011-08-05 09:58:43,240 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT66112759529706682888ef092a7-30ec-4e41-ba1e-8e18ef33555a
6232011-08-05 09:58:43,241 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
6242011-08-05 09:58:44,234 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
6252011-08-05 09:58:44,234 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
6262011-08-05 09:58:44,364 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
6272011-08-05 09:58:44,364 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
6282011-08-05 09:58:44,373 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
6292011-08-05 09:58:44,379 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
6302011-08-05 09:58:44,379 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
6312011-08-05 09:58:44,379 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
6322011-08-05 09:58:44,379 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
6332011-08-05 09:58:44,379 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
6342011-08-05 09:58:44,379 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
6352011-08-05 09:58:44,379 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2524362131158427594da61df93-5219-406a-a1bb-896cac6a0be7
6362011-08-05 09:58:44,382 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
6372011-08-05 09:58:45,831 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
6382011-08-05 09:58:45,831 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
6392011-08-05 09:58:45,923 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
6402011-08-05 09:58:45,924 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
6412011-08-05 09:58:45,930 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
6422011-08-05 09:58:45,935 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
6432011-08-05 09:58:45,935 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
6442011-08-05 09:58:45,935 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
6452011-08-05 09:58:45,935 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
6462011-08-05 09:58:45,935 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
6472011-08-05 09:58:45,935 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
6482011-08-05 09:58:45,936 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2849824033547198107f2664c1-711c-4c8f-b72c-e7f801ddc2a2
6492011-08-05 09:58:45,937 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
6502011-08-05 09:58:47,880 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
6512011-08-05 09:58:47,880 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
6522011-08-05 09:58:47,986 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
6532011-08-05 09:58:47,986 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
6542011-08-05 09:58:47,987 INFO  [              loci.formats.in.TiffReader] ( Thread-19) Checking comment style
6552011-08-05 09:58:47,987 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
6562011-08-05 09:58:47,989 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Tagged Image File Format
6572011-08-05 09:58:47,989 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.TiffDelegateReader
6582011-08-05 09:58:47,989 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
6592011-08-05 09:58:47,989 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
6602011-08-05 09:58:47,989 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
6612011-08-05 09:58:47,989 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
6622011-08-05 09:58:47,990 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT482066634024063696fb5d518e-38c6-4939-ba2d-2a6ae2e8cc74
6632011-08-05 09:58:47,990 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
6642011-08-05 09:58:48,910 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
6652011-08-05 09:58:48,910 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
6662011-08-05 09:58:48,995 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
6672011-08-05 09:58:48,995 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
6682011-08-05 09:58:49,001 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
6692011-08-05 09:58:49,007 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
6702011-08-05 09:58:49,007 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
6712011-08-05 09:58:49,007 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
6722011-08-05 09:58:49,007 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
6732011-08-05 09:58:49,007 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
6742011-08-05 09:58:49,007 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
6752011-08-05 09:58:49,007 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT8017146450576635848c552c901-5b6a-4d81-adb2-f6567e13036f
6762011-08-05 09:58:49,009 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
6772011-08-05 09:58:50,114 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
6782011-08-05 09:58:50,115 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
6792011-08-05 09:58:50,203 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
6802011-08-05 09:58:50,204 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
6812011-08-05 09:58:50,216 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
6822011-08-05 09:58:50,223 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
6832011-08-05 09:58:50,224 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
6842011-08-05 09:58:50,224 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
6852011-08-05 09:58:50,224 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
6862011-08-05 09:58:50,224 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
6872011-08-05 09:58:50,224 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
6882011-08-05 09:58:50,224 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT82439956282013439544de016fe-3d09-449b-b773-9f03a8ddf788
6892011-08-05 09:58:50,237 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
6902011-08-05 09:58:51,409 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
6912011-08-05 09:58:51,409 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
6922011-08-05 09:58:51,512 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
6932011-08-05 09:58:51,512 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
6942011-08-05 09:58:51,518 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
6952011-08-05 09:58:51,521 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
6962011-08-05 09:58:51,521 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
6972011-08-05 09:58:51,524 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
6982011-08-05 09:58:51,524 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
6992011-08-05 09:58:51,524 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
7002011-08-05 09:58:51,524 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
7012011-08-05 09:58:51,524 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
7022011-08-05 09:58:51,524 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
7032011-08-05 09:58:51,524 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT696955406425499085470471a50-89fb-4f52-983b-37882c41bc33
7042011-08-05 09:58:51,525 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
7052011-08-05 09:58:51,698 INFO  [       ome.formats.importer.ImportConfig] ( Thread-24) OMERO Version: 4.3.2-DEV-b00b38af-b2629
7062011-08-05 09:58:51,698 INFO  [       ome.formats.importer.ImportConfig] ( Thread-24) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
7072011-08-05 09:58:51,699 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-24) Depth: 4 Metadata Level: MINIMUM
7082011-08-05 09:58:51,744 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading header
7092011-08-05 09:58:51,744 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating core metadata
7102011-08-05 09:58:51,744 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading extended header
7112011-08-05 09:58:51,748 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating original metadata
7122011-08-05 09:58:51,750 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating OME metadata
7132011-08-05 09:58:51,783 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading header
7142011-08-05 09:58:51,783 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating core metadata
7152011-08-05 09:58:51,783 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading extended header
7162011-08-05 09:58:51,787 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating original metadata
7172011-08-05 09:58:51,790 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating OME metadata
7182011-08-05 09:58:51,820 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading header
7192011-08-05 09:58:51,820 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating core metadata
7202011-08-05 09:58:51,820 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading extended header
7212011-08-05 09:58:51,837 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating original metadata
7222011-08-05 09:58:51,841 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating OME metadata
7232011-08-05 09:58:51,876 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading header
7242011-08-05 09:58:51,877 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating core metadata
7252011-08-05 09:58:51,877 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading extended header
7262011-08-05 09:58:51,877 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating original metadata
7272011-08-05 09:58:51,877 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating OME metadata
7282011-08-05 09:58:51,902 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading header
7292011-08-05 09:58:51,902 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating core metadata
7302011-08-05 09:58:51,902 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading extended header
7312011-08-05 09:58:51,905 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating original metadata
7322011-08-05 09:58:51,906 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating OME metadata
7332011-08-05 09:58:51,908 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-24) 5 file(s) parsed into 5 group(s) with 5 call(s) to setId in 206ms. (209ms total) [0 unknowns]
7342011-08-05 09:58:52,277 INFO  [       ome.formats.importer.ImportConfig] ( Thread-24) OMERO Version: 4.3.2-DEV-b00b38af-b2629
7352011-08-05 09:58:52,277 INFO  [       ome.formats.importer.ImportConfig] ( Thread-24) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
7362011-08-05 09:58:52,414 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading header
7372011-08-05 09:58:52,414 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating core metadata
7382011-08-05 09:58:52,414 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading extended header
7392011-08-05 09:58:52,416 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating original metadata
7402011-08-05 09:58:52,428 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating OME metadata
7412011-08-05 09:58:52,443 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading header
7422011-08-05 09:58:52,444 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating original metadata
7432011-08-05 09:58:52,482 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating OME metadata
7442011-08-05 09:58:52,550 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) File format: Deltavision
7452011-08-05 09:58:52,551 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Base reader: loci.formats.in.DeltavisionReader
7462011-08-05 09:58:52,551 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Metadata only import? false
7472011-08-05 09:58:52,551 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Archiving enabled? false
7482011-08-05 09:58:52,551 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Container metadata only import? false
7492011-08-05 09:58:52,551 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Reader is not of HCS domain, use metafile: true
7502011-08-05 09:58:52,552 DEBUG [              omero.util.TempFileManager] ( Thread-24) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT86570676827463491948bfc98f7-caca-44e8-b30f-cf389b69c114
7512011-08-05 09:58:52,555 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-24) Unknown target class for LSID: Image:0
7522011-08-05 09:58:53,524 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
7532011-08-05 09:58:53,524 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
7542011-08-05 09:58:53,731 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
7552011-08-05 09:58:53,732 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
7562011-08-05 09:58:53,750 INFO  [              loci.formats.in.TiffReader] ( Thread-19) Checking comment style
7572011-08-05 09:58:53,751 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
7582011-08-05 09:58:53,775 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Tagged Image File Format
7592011-08-05 09:58:53,775 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.TiffDelegateReader
7602011-08-05 09:58:53,775 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
7612011-08-05 09:58:53,775 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
7622011-08-05 09:58:53,775 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
7632011-08-05 09:58:53,775 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
7642011-08-05 09:58:53,776 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT83829569690156842556b9d3b37-2772-407c-be96-aeab8fda3010
7652011-08-05 09:58:53,776 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
7662011-08-05 09:58:54,287 ERROR [      ome.formats.importer.ImportLibrary] ( Thread-24) Close exception hidden by previous exception
767Ice.ObjectNotExistException
768    id.name = "a:c:2:36:16afe716:131990ea7b4:-7fc8omero.api.RawPixelsStore"
769    id.category = "67fad290-015b-4f7f-9373-599201ad0a1e"
770    facet = ""
771    operation = "close"
772        at IceInternal.Outgoing.invoke(Outgoing.java:147)
773        at omero.api._RawPixelsStoreDelM.close(_RawPixelsStoreDelM.java:1894)
774        at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2642)
775        at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2614)
776        at ome.formats.OMEROMetadataStoreClient.finalizePixelStore(OMEROMetadataStoreClient.java:2479)
777        at ome.formats.importer.ImportLibrary.importImage(ImportLibrary.java:593)
778        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6314)
779        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172)
780        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316)
781        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
782        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
783        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
784        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
785        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
786        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
787        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
788        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
789        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
790        at java.lang.Thread.run(Thread.java:680)
7912011-08-05 09:58:54,311 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-24) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7ff8omero.api.RawFileStore" -t:tcp -h 10.12.2.54 -p 49320
792omero.InternalException
793    serverStackTrace = "ome.conditions.InternalException:  Wrapped Exception: (org.hibernate.HibernateException):
794                        Flush during cascade is dangerous
795                                at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1204)
796                                at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:294)
797                                at ome.logic.UpdateImpl.doAction(UpdateImpl.java:312)
798                                at ome.logic.UpdateImpl.doAction(UpdateImpl.java:302)
799                                at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:118)
800                                at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:420)
801                                at ome.security.basic.EventHandler.invoke(EventHandler.java:116)
802                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
803                                at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182)
804                                at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166)
805                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
806                                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
807                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
808                                at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
809                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
810                                at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
811                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
812                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
813                                at $Proxy81.close(Unknown Source)
814                                at sun.reflect.GeneratedMethodAccessor951.invoke(Unknown Source)
815                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
816                                at java.lang.reflect.Method.invoke(Method.java:597)
817                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
818                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
819                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
820                                at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
821                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
822                                at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
823                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
824                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
825                                at $Proxy81.close(Unknown Source)
826                                at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:227)
827                                at omero.api._RawFileStoreTie.close_async(_RawFileStoreTie.java:120)
828                                at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142)
829                                at omero.api._RawFileStoreDisp.__dispatch(_RawFileStoreDisp.java:327)
830                                at IceInternal.Incoming.invoke(Incoming.java:159)
831                                at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
832                                at Ice.ConnectionI.message(ConnectionI.java:972)
833                                at IceInternal.ThreadPool.run(ThreadPool.java:577)
834                                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
835                                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
836                        "
837    serverExceptionClass = "ome.conditions.InternalException"
838    message = " Wrapped Exception: (org.hibernate.HibernateException):
839               Flush during cascade is dangerous"
840        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
841        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
842        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
843        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
844        at java.lang.Class.newInstance0(Class.java:355)
845        at java.lang.Class.newInstance(Class.java:308)
846        at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
847        at IceInternal.BasicStream.throwException(BasicStream.java:1632)
848        at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
849        at omero.api._RawFileStoreDelM.close(_RawFileStoreDelM.java:408)
850        at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:595)
851        at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:567)
852        at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896)
853        at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:917)
854        at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893)
855        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358)
856        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172)
857        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316)
858        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
859        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
860        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
861        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
862        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
863        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
864        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
865        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
866        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
867        at java.lang.Thread.run(Thread.java:680)
8682011-08-05 09:58:54,333 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-19) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7ff8omero.api.RawFileStore" -t:tcp -h 10.12.2.54 -p 49320
869omero.InternalException
870    serverStackTrace = "ome.conditions.InternalException:  Wrapped Exception: (org.springframework.transaction.TransactionSystemException):
871                        Could not roll back JDBC transaction; nested exception is java.sql.SQLException: connection handle already closed
872                                at org.springframework.jdbc.datasource.DataSourceTransactionManager.doRollback(DataSourceTransactionManager.java:286)
873                                at org.springframework.transaction.support.AbstractPlatformTransactionManager.doRollbackOnCommitException(AbstractPlatformTransactionManager.java:895)
874                                at org.springframework.transaction.support.AbstractPlatformTransactionManager.processCommit(AbstractPlatformTransactionManager.java:782)
875                                at org.springframework.transaction.support.AbstractPlatformTransactionManager.commit(AbstractPlatformTransactionManager.java:723)
876                                at org.springframework.transaction.interceptor.TransactionAspectSupport.commitTransactionAfterReturning(TransactionAspectSupport.java:412)
877                                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:118)
878                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
879                                at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
880                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
881                                at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
882                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
883                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
884                                at $Proxy81.close(Unknown Source)
885                                at sun.reflect.GeneratedMethodAccessor951.invoke(Unknown Source)
886                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
887                                at java.lang.reflect.Method.invoke(Method.java:597)
888                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
889                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
890                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
891                                at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
892                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
893                                at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
894                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
895                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
896                                at $Proxy81.close(Unknown Source)
897                                at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:227)
898                                at omero.api._RawFileStoreTie.close_async(_RawFileStoreTie.java:120)
899                                at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142)
900                                at omero.api._RawFileStoreDisp.__dispatch(_RawFileStoreDisp.java:327)
901                                at IceInternal.Incoming.invoke(Incoming.java:159)
902                                at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
903                                at Ice.ConnectionI.message(ConnectionI.java:972)
904                                at IceInternal.ThreadPool.run(ThreadPool.java:577)
905                                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
906                                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
907                        "
908    serverExceptionClass = "ome.conditions.InternalException"
909    message = " Wrapped Exception: (org.springframework.transaction.TransactionSystemException):
910               Could not roll back JDBC transaction; nested exception is java.sql.SQLException: connection handle already closed"
911        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
912        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
913        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
914        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
915        at java.lang.Class.newInstance0(Class.java:355)
916        at java.lang.Class.newInstance(Class.java:308)
917        at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
918        at IceInternal.BasicStream.throwException(BasicStream.java:1632)
919        at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
920        at omero.api._RawFileStoreDelM.close(_RawFileStoreDelM.java:408)
921        at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:595)
922        at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:567)
923        at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896)
924        at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:917)
925        at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893)
926        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358)
927        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172)
928        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316)
929        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
930        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
931        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
932        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
933        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
934        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
935        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
936        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
937        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
938        at java.lang.Thread.run(Thread.java:680)
9392011-08-05 09:58:54,425 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
9402011-08-05 09:58:54,425 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
9412011-08-05 09:58:54,446 INFO  [       ome.formats.importer.ImportConfig] ( Thread-24) OMERO Version: 4.3.2-DEV-b00b38af-b2629
9422011-08-05 09:58:54,446 INFO  [       ome.formats.importer.ImportConfig] ( Thread-24) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
9432011-08-05 09:58:54,597 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading header
9442011-08-05 09:58:54,598 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating core metadata
9452011-08-05 09:58:54,598 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading extended header
9462011-08-05 09:58:54,601 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating original metadata
9472011-08-05 09:58:54,611 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating OME metadata
9482011-08-05 09:58:54,614 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
9492011-08-05 09:58:54,614 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
9502011-08-05 09:58:54,623 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
9512011-08-05 09:58:54,708 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading header
9522011-08-05 09:58:54,709 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating original metadata
9532011-08-05 09:58:54,709 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating OME metadata
9542011-08-05 09:58:54,735 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) File format: Deltavision
9552011-08-05 09:58:54,735 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Base reader: loci.formats.in.DeltavisionReader
9562011-08-05 09:58:54,735 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Metadata only import? false
9572011-08-05 09:58:54,735 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Archiving enabled? false
9582011-08-05 09:58:54,735 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Container metadata only import? false
9592011-08-05 09:58:54,735 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Reader is not of HCS domain, use metafile: true
9602011-08-05 09:58:54,736 DEBUG [              omero.util.TempFileManager] ( Thread-24) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT7641369026663285012341478a3-2e9c-4342-a8ca-39a1361cbbd9
9612011-08-05 09:58:54,737 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-24) Unknown target class for LSID: Image:0
9622011-08-05 09:58:54,738 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
9632011-08-05 09:58:54,750 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
9642011-08-05 09:58:54,754 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
9652011-08-05 09:58:54,754 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
9662011-08-05 09:58:54,754 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
9672011-08-05 09:58:54,754 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
9682011-08-05 09:58:54,754 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
9692011-08-05 09:58:54,755 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
9702011-08-05 09:58:54,755 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4976720291863628820e5aeea72-e42c-43b4-8adb-b764ac807be6
9712011-08-05 09:58:54,758 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
9722011-08-05 09:58:54,758 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
9732011-08-05 09:58:54,829 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-24) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7fc7omero.api.RawFileStore" -t:tcp -h 10.12.2.54 -p 49320
974omero.InternalException
975    serverStackTrace = "ome.conditions.InternalException:  Wrapped Exception: (org.hibernate.HibernateException):
976                        Flush during cascade is dangerous
977                                at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1204)
978                                at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:294)
979                                at ome.logic.UpdateImpl.doAction(UpdateImpl.java:312)
980                                at ome.logic.UpdateImpl.doAction(UpdateImpl.java:302)
981                                at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:118)
982                                at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:420)
983                                at ome.security.basic.EventHandler.invoke(EventHandler.java:116)
984                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
985                                at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182)
986                                at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166)
987                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
988                                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
989                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
990                                at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
991                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
992                                at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
993                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
994                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
995                                at $Proxy81.close(Unknown Source)
996                                at sun.reflect.GeneratedMethodAccessor951.invoke(Unknown Source)
997                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
998                                at java.lang.reflect.Method.invoke(Method.java:597)
999                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
1000                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
1001                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
1002                                at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
1003                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1004                                at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
1005                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1006                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
1007                                at $Proxy81.close(Unknown Source)
1008                                at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:227)
1009                                at omero.api._RawFileStoreTie.close_async(_RawFileStoreTie.java:120)
1010                                at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142)
1011                                at omero.api._RawFileStoreDisp.__dispatch(_RawFileStoreDisp.java:327)
1012                                at IceInternal.Incoming.invoke(Incoming.java:159)
1013                                at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
1014                                at Ice.ConnectionI.message(ConnectionI.java:972)
1015                                at IceInternal.ThreadPool.run(ThreadPool.java:577)
1016                                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
1017                                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
1018                        "
1019    serverExceptionClass = "ome.conditions.InternalException"
1020    message = " Wrapped Exception: (org.hibernate.HibernateException):
1021               Flush during cascade is dangerous"
1022        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
1023        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
1024        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
1025        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
1026        at java.lang.Class.newInstance0(Class.java:355)
1027        at java.lang.Class.newInstance(Class.java:308)
1028        at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
1029        at IceInternal.BasicStream.throwException(BasicStream.java:1632)
1030        at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
1031        at omero.api._RawFileStoreDelM.close(_RawFileStoreDelM.java:408)
1032        at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:595)
1033        at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:567)
1034        at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896)
1035        at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:917)
1036        at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893)
1037        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358)
1038        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172)
1039        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316)
1040        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
1041        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
1042        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
1043        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1044        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1045        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1046        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1047        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
1048        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1049        at java.lang.Thread.run(Thread.java:680)
10502011-08-05 09:58:54,847 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-19) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7fc7omero.api.RawFileStore" -t:tcp -h 10.12.2.54 -p 49320
1051omero.InternalException
1052    serverStackTrace = "ome.conditions.InternalException:  Wrapped Exception: (org.springframework.transaction.TransactionSystemException):
1053                        Could not roll back JDBC transaction; nested exception is java.sql.SQLException: connection handle already closed
1054                                at org.springframework.jdbc.datasource.DataSourceTransactionManager.doRollback(DataSourceTransactionManager.java:286)
1055                                at org.springframework.transaction.support.AbstractPlatformTransactionManager.processRollback(AbstractPlatformTransactionManager.java:845)
1056                                at org.springframework.transaction.support.AbstractPlatformTransactionManager.rollback(AbstractPlatformTransactionManager.java:822)
1057                                at org.springframework.transaction.interceptor.TransactionAspectSupport.completeTransactionAfterThrowing(TransactionAspectSupport.java:430)
1058                                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:112)
1059                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1060                                at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
1061                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1062                                at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
1063                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1064                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
1065                                at $Proxy81.close(Unknown Source)
1066                                at sun.reflect.GeneratedMethodAccessor951.invoke(Unknown Source)
1067                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
1068                                at java.lang.reflect.Method.invoke(Method.java:597)
1069                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
1070                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
1071                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
1072                                at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
1073                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1074                                at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
1075                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1076                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
1077                                at $Proxy81.close(Unknown Source)
1078                                at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:227)
1079                                at omero.api._RawFileStoreTie.close_async(_RawFileStoreTie.java:120)
1080                                at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142)
1081                                at omero.api._RawFileStoreDisp.__dispatch(_RawFileStoreDisp.java:327)
1082                                at IceInternal.Incoming.invoke(Incoming.java:159)
1083                                at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
1084                                at Ice.ConnectionI.message(ConnectionI.java:972)
1085                                at IceInternal.ThreadPool.run(ThreadPool.java:577)
1086                                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
1087                                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
1088                        "
1089    serverExceptionClass = "ome.conditions.InternalException"
1090    message = " Wrapped Exception: (org.springframework.transaction.TransactionSystemException):
1091               Could not roll back JDBC transaction; nested exception is java.sql.SQLException: connection handle already closed"
1092        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
1093        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
1094        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
1095        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
1096        at java.lang.Class.newInstance0(Class.java:355)
1097        at java.lang.Class.newInstance(Class.java:308)
1098        at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
1099        at IceInternal.BasicStream.throwException(BasicStream.java:1632)
1100        at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
1101        at omero.api._RawFileStoreDelM.close(_RawFileStoreDelM.java:408)
1102        at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:595)
1103        at omero.api.RawFileStorePrxHelper.close(RawFileStorePrxHelper.java:567)
1104        at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896)
1105        at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:917)
1106        at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893)
1107        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358)
1108        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172)
1109        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316)
1110        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
1111        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
1112        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
1113        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1114        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1115        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1116        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1117        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
1118        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1119        at java.lang.Thread.run(Thread.java:680)
11202011-08-05 09:58:54,857 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-24) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7fc6omero.api.RawPixelsStore" -t:tcp -h 10.12.2.54 -p 49320
1121omero.InternalException
1122    serverStackTrace = "ome.conditions.InternalException:  Wrapped Exception: (org.hibernate.HibernateException):
1123                        Flush during cascade is dangerous
1124                                at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1204)
1125                                at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:294)
1126                                at ome.logic.UpdateImpl.doAction(UpdateImpl.java:312)
1127                                at ome.logic.UpdateImpl.doAction(UpdateImpl.java:302)
1128                                at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:118)
1129                                at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:420)
1130                                at ome.security.basic.EventHandler.invoke(EventHandler.java:116)
1131                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1132                                at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182)
1133                                at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166)
1134                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1135                                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
1136                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1137                                at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
1138                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1139                                at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
1140                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1141                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
1142                                at $Proxy82.close(Unknown Source)
1143                                at sun.reflect.GeneratedMethodAccessor951.invoke(Unknown Source)
1144                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
1145                                at java.lang.reflect.Method.invoke(Method.java:597)
1146                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
1147                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
1148                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
1149                                at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
1150                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1151                                at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
1152                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1153                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
1154                                at $Proxy82.close(Unknown Source)
1155                                at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:227)
1156                                at omero.api._RawPixelsStoreTie.close_async(_RawPixelsStoreTie.java:330)
1157                                at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142)
1158                                at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1157)
1159                                at IceInternal.Incoming.invoke(Incoming.java:159)
1160                                at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
1161                                at Ice.ConnectionI.message(ConnectionI.java:972)
1162                                at IceInternal.ThreadPool.run(ThreadPool.java:577)
1163                                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
1164                                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
1165                        "
1166    serverExceptionClass = "ome.conditions.InternalException"
1167    message = " Wrapped Exception: (org.hibernate.HibernateException):
1168               Flush during cascade is dangerous"
1169        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
1170        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
1171        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
1172        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
1173        at java.lang.Class.newInstance0(Class.java:355)
1174        at java.lang.Class.newInstance(Class.java:308)
1175        at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
1176        at IceInternal.BasicStream.throwException(BasicStream.java:1632)
1177        at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
1178        at omero.api._RawPixelsStoreDelM.close(_RawPixelsStoreDelM.java:1901)
1179        at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2642)
1180        at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2614)
1181        at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896)
1182        at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:920)
1183        at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893)
1184        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358)
1185        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172)
1186        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316)
1187        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
1188        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
1189        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
1190        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1191        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1192        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1193        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1194        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
1195        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1196        at java.lang.Thread.run(Thread.java:680)
11972011-08-05 09:58:54,864 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-19) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7fc6omero.api.RawPixelsStore" -t:tcp -h 10.12.2.54 -p 49320
1198omero.InternalException
1199    serverStackTrace = "ome.conditions.InternalException:  Wrapped Exception: (org.hibernate.SessionException):
1200                        Session is closed!
1201                                at org.hibernate.impl.AbstractSessionImpl.errorIfClosed(AbstractSessionImpl.java:72)
1202                                at org.hibernate.impl.SessionImpl.getJDBCContext(SessionImpl.java:2002)
1203                                at org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:328)
1204                                at org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:51)
1205                                at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:1208)
1206                                at ome.logic.UpdateImpl.afterUpdate(UpdateImpl.java:294)
1207                                at ome.logic.UpdateImpl.doAction(UpdateImpl.java:312)
1208                                at ome.logic.UpdateImpl.doAction(UpdateImpl.java:302)
1209                                at ome.logic.UpdateImpl.saveAndReturnObject(UpdateImpl.java:118)
1210                                at ome.security.basic.BasicSecuritySystem.loadEventContext(BasicSecuritySystem.java:420)
1211                                at ome.security.basic.EventHandler.invoke(EventHandler.java:116)
1212                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1213                                at ome.tools.hibernate.SessionHandler.doStateful(SessionHandler.java:182)
1214                                at ome.tools.hibernate.SessionHandler.invoke(SessionHandler.java:166)
1215                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1216                                at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:108)
1217                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1218                                at ome.tools.hibernate.ProxyCleanupFilter$Interceptor.invoke(ProxyCleanupFilter.java:231)
1219                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1220                                at ome.services.util.ServiceHandler.invoke(ServiceHandler.java:116)
1221                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1222                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
1223                                at $Proxy82.close(Unknown Source)
1224                                at sun.reflect.GeneratedMethodAccessor951.invoke(Unknown Source)
1225                                at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
1226                                at java.lang.reflect.Method.invoke(Method.java:597)
1227                                at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
1228                                at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
1229                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
1230                                at ome.security.basic.BasicSecurityWiring.invoke(BasicSecurityWiring.java:83)
1231                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1232                                at ome.services.blitz.fire.AopContextInitializer.invoke(AopContextInitializer.java:43)
1233                                at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
1234                                at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
1235                                at $Proxy82.close(Unknown Source)
1236                                at ome.services.blitz.impl.AbstractAmdServant.close_async(AbstractAmdServant.java:227)
1237                                at omero.api._RawPixelsStoreTie.close_async(_RawPixelsStoreTie.java:330)
1238                                at omero.api._StatefulServiceInterfaceDisp.___close(_StatefulServiceInterfaceDisp.java:142)
1239                                at omero.api._RawPixelsStoreDisp.__dispatch(_RawPixelsStoreDisp.java:1157)
1240                                at IceInternal.Incoming.invoke(Incoming.java:159)
1241                                at Ice.ConnectionI.invokeAll(ConnectionI.java:2037)
1242                                at Ice.ConnectionI.message(ConnectionI.java:972)
1243                                at IceInternal.ThreadPool.run(ThreadPool.java:577)
1244                                at IceInternal.ThreadPool.access$100(ThreadPool.java:12)
1245                                at IceInternal.ThreadPool$EventHandlerThread.run(ThreadPool.java:971)
1246                        "
1247    serverExceptionClass = "ome.conditions.InternalException"
1248    message = " Wrapped Exception: (org.hibernate.SessionException):
1249               Session is closed!"
1250        at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
1251        at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
1252        at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
1253        at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
1254        at java.lang.Class.newInstance0(Class.java:355)
1255        at java.lang.Class.newInstance(Class.java:308)
1256        at IceInternal.BasicStream$DynamicUserExceptionFactory.createAndThrow(BasicStream.java:2243)
1257        at IceInternal.BasicStream.throwException(BasicStream.java:1632)
1258        at IceInternal.Outgoing.throwUserException(Outgoing.java:442)
1259        at omero.api._RawPixelsStoreDelM.close(_RawPixelsStoreDelM.java:1901)
1260        at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2642)
1261        at omero.api.RawPixelsStorePrxHelper.close(RawPixelsStorePrxHelper.java:2614)
1262        at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896)
1263        at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:920)
1264        at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893)
1265        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358)
1266        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172)
1267        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316)
1268        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
1269        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
1270        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
1271        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1272        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1273        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1274        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1275        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
1276        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1277        at java.lang.Thread.run(Thread.java:680)
12782011-08-05 09:58:54,866 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-19) Exception closing "67fad290-015b-4f7f-9373-599201ad0a1e/a:c:2:36:16afe716:131990ea7b4:-7fc5omero.api.ThumbnailStore" -t:tcp -h 10.12.2.54 -p 49320
1279Ice.ObjectNotExistException
1280    id.name = "a:c:2:36:16afe716:131990ea7b4:-7fc5omero.api.ThumbnailStore"
1281    id.category = "67fad290-015b-4f7f-9373-599201ad0a1e"
1282    facet = ""
1283    operation = "close"
1284        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1285        at omero.api._ThumbnailStoreDelM.close(_ThumbnailStoreDelM.java:63)
1286        at omero.api.ThumbnailStorePrxHelper.close(ThumbnailStorePrxHelper.java:117)
1287        at omero.api.ThumbnailStorePrxHelper.close(ThumbnailStorePrxHelper.java:89)
1288        at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896)
1289        at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:923)
1290        at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893)
1291        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358)
1292        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172)
1293        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316)
1294        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
1295        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
1296        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
1297        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1298        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1299        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1300        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1301        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
1302        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1303        at java.lang.Thread.run(Thread.java:680)
13042011-08-05 09:58:54,868 WARN  [    ome.formats.OMEROMetadataStoreClient] ( Thread-19) Exception closing 67fad290-015b-4f7f-9373-599201ad0a1e/a1266e6b-244f-460a-9066-550ab8408c23omero.api.MetadataStore -t:tcp -h 10.12.2.54 -p 49320
1305Ice.ObjectNotExistException
1306    id.name = "a1266e6b-244f-460a-9066-550ab8408c23omero.api.MetadataStore"
1307    id.category = "67fad290-015b-4f7f-9373-599201ad0a1e"
1308    facet = ""
1309    operation = "close"
1310        at IceInternal.Outgoing.invoke(Outgoing.java:147)
1311        at omero.api._MetadataStoreDelM.close(_MetadataStoreDelM.java:386)
1312        at omero.api.MetadataStorePrxHelper.close(MetadataStorePrxHelper.java:598)
1313        at omero.api.MetadataStorePrxHelper.close(MetadataStorePrxHelper.java:570)
1314        at ome.formats.OMEROMetadataStoreClient.closeQuietly(OMEROMetadataStoreClient.java:896)
1315        at ome.formats.OMEROMetadataStoreClient.closeServices(OMEROMetadataStoreClient.java:926)
1316        at org.openmicroscopy.shoola.env.data.OMEROGateway.closeImport(OMEROGateway.java:7893)
1317        at org.openmicroscopy.shoola.env.data.OMEROGateway.importImage(OMEROGateway.java:6358)
1318        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importCandidates(OmeroImageServiceImpl.java:172)
1319        at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.importFile(OmeroImageServiceImpl.java:1316)
1320        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.importFile(ImagesImporter.java:85)
1321        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter.access$000(ImagesImporter.java:54)
1322        at org.openmicroscopy.shoola.env.data.views.calls.ImagesImporter$1.doCall(ImagesImporter.java:111)
1323        at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
1324        at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
1325        at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
1326        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
1327        at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:274)
1328        at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
1329        at java.lang.Thread.run(Thread.java:680)
13302011-08-05 09:58:54,980 INFO  [       ome.formats.importer.ImportConfig] ( Thread-24) OMERO Version: 4.3.2-DEV-b00b38af-b2629
13312011-08-05 09:58:54,981 INFO  [       ome.formats.importer.ImportConfig] ( Thread-24) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
13322011-08-05 09:58:55,026 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
13332011-08-05 09:58:55,026 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
13342011-08-05 09:58:55,169 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading header
13352011-08-05 09:58:55,169 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating core metadata
13362011-08-05 09:58:55,169 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading extended header
13372011-08-05 09:58:55,170 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating original metadata
13382011-08-05 09:58:55,170 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating OME metadata
13392011-08-05 09:58:55,227 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
13402011-08-05 09:58:55,227 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
13412011-08-05 09:58:55,234 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
13422011-08-05 09:58:55,406 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
13432011-08-05 09:58:55,429 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
13442011-08-05 09:58:55,432 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
13452011-08-05 09:58:55,432 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
13462011-08-05 09:58:55,432 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
13472011-08-05 09:58:55,432 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
13482011-08-05 09:58:55,432 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
13492011-08-05 09:58:55,432 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
13502011-08-05 09:58:55,433 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT7900368334191687276c521bbc1-cb2f-4452-aa6e-85e3ad9b1d34
13512011-08-05 09:58:55,434 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
13522011-08-05 09:58:55,444 INFO  [       ome.formats.importer.ImportConfig] ( Thread-24) OMERO Version: 4.3.2-DEV-b00b38af-b2629
13532011-08-05 09:58:55,444 INFO  [       ome.formats.importer.ImportConfig] ( Thread-24) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
13542011-08-05 09:58:55,680 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) OMERO Version: 4.3.2-DEV-b00b38af-b2629
13552011-08-05 09:58:55,681 INFO  [       ome.formats.importer.ImportConfig] ( Thread-19) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
13562011-08-05 09:58:55,690 INFO  [       ome.formats.importer.ImportConfig] ( Thread-24) OMERO Version: 4.3.2-DEV-b00b38af-b2629
13572011-08-05 09:58:55,690 INFO  [       ome.formats.importer.ImportConfig] ( Thread-24) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
13582011-08-05 09:58:55,836 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading header
13592011-08-05 09:58:55,836 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating core metadata
13602011-08-05 09:58:55,836 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading extended header
13612011-08-05 09:58:55,839 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating original metadata
13622011-08-05 09:58:55,854 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating OME metadata
13632011-08-05 09:58:55,909 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Reading IFDs
13642011-08-05 09:58:55,909 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-19) Populating metadata
13652011-08-05 09:58:55,923 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-19) Populating OME metadata
13662011-08-05 09:58:56,047 INFO  [              loci.formats.FormatHandler] ( Thread-24) Reading header
13672011-08-05 09:58:56,047 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating original metadata
13682011-08-05 09:58:56,048 INFO  [              loci.formats.FormatHandler] ( Thread-24) Populating OME metadata
13692011-08-05 09:58:56,077 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-19) Unknown Binning value '2x1' will be stored as "Other"
13702011-08-05 09:58:56,078 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) File format: Deltavision
13712011-08-05 09:58:56,078 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Base reader: loci.formats.in.DeltavisionReader
13722011-08-05 09:58:56,078 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Metadata only import? false
13732011-08-05 09:58:56,078 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Archiving enabled? false
13742011-08-05 09:58:56,079 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Container metadata only import? false
13752011-08-05 09:58:56,079 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-24) Reader is not of HCS domain, use metafile: true
13762011-08-05 09:58:56,079 DEBUG [              omero.util.TempFileManager] ( Thread-24) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT42638338586673596375353161d-e596-4176-80ac-66944e30065a
13772011-08-05 09:58:56,082 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-24) Unknown target class for LSID: Image:0
13782011-08-05 09:58:56,110 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-19) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
13792011-08-05 09:58:56,114 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) File format: Metamorph STK
13802011-08-05 09:58:56,114 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Base reader: loci.formats.in.MetamorphReader
13812011-08-05 09:58:56,114 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Metadata only import? false
13822011-08-05 09:58:56,114 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Archiving enabled? false
13832011-08-05 09:58:56,114 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Container metadata only import? false
13842011-08-05 09:58:56,114 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-19) Reader is not of HCS domain, use metafile: true
13852011-08-05 09:58:56,115 DEBUG [              omero.util.TempFileManager] ( Thread-19) Added file /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4115508825493299786e267bdf5-0fde-4d1c-8445-fd3dd244be51
13862011-08-05 09:58:56,119 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
13872011-08-05 09:58:56,119 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-19) Unknown target class for LSID: Image:0
13882011-08-05 10:05:44,197 DEBUG [              omero.util.TempFileManager] ( Thread-20) Removing tree: /Users/ola/omero/tmp/omero_ola/407@misio.dyn.lifesci.dundee.ac.uk
13892011-08-05 10:05:54,761 INFO  [opy.shoola.env.rnd.PixelsServicesFactory] (nitializer) Heap memory usage: max 129957888
13902011-08-05 10:05:54,767 INFO  [enmicroscopy.shoola.env.init.TaskBarInit] (nitializer) Loaded L&F: com.apple.laf.AquaLookAndFeel
13912011-08-05 10:05:58,348 INFO  [copy.shoola.env.data.DataServicesFactory] (nitializer) Server version: 4.3.2
1392Client version: Beta4.3.2-DEV
1393os_name: Mac OS X
1394os_arch: x86_64
1395java_version: 1.6.0_26
1396os_version: 10.6.8
1397
13982011-08-05 10:05:58,491 INFO  [y.shoola.env.data.login.LoginServiceImpl] (nitializer) Logged onto OMERO at: localhost
1399User Name: ola -- Password: ***
1400
14012011-08-05 10:06:28,011 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629
14022011-08-05 10:06:28,011 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
14032011-08-05 10:06:28,209 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs
14042011-08-05 10:06:28,211 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata
14052011-08-05 10:06:28,237 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata
14062011-08-05 10:06:29,437 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other"
14072011-08-05 10:06:29,450 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
14082011-08-05 10:06:29,458 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK
14092011-08-05 10:06:29,458 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader
14102011-08-05 10:06:29,458 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false
14112011-08-05 10:06:29,458 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false
14122011-08-05 10:06:29,458 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false
14132011-08-05 10:06:29,459 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true
14142011-08-05 10:06:29,484 DEBUG [              omero.util.TempFileManager] ( Thread-21) Chose global tmpdir:  /Users/ola
14152011-08-05 10:06:29,486 DEBUG [              omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT78574443755285953332ffdfbd8-2a1b-4212-87a0-13d1e24c1344
14162011-08-05 10:06:29,511 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0
14172011-08-05 10:06:31,410 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629
14182011-08-05 10:06:31,410 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
14192011-08-05 10:06:31,883 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs
14202011-08-05 10:06:31,884 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata
14212011-08-05 10:06:31,898 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata
14222011-08-05 10:06:31,907 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other"
14232011-08-05 10:06:31,907 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
14242011-08-05 10:06:31,913 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK
14252011-08-05 10:06:31,913 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader
14262011-08-05 10:06:31,913 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false
14272011-08-05 10:06:31,913 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false
14282011-08-05 10:06:31,913 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false
14292011-08-05 10:06:31,913 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true
14302011-08-05 10:06:31,914 DEBUG [              omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3894760049340472416c69e5947-dab0-4100-a26a-9ce3c5122d5c
14312011-08-05 10:06:31,917 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0
14322011-08-05 10:06:37,798 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629
14332011-08-05 10:06:37,798 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
14342011-08-05 10:06:37,977 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs
14352011-08-05 10:06:37,978 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata
14362011-08-05 10:06:37,989 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata
14372011-08-05 10:06:38,000 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other"
14382011-08-05 10:06:38,000 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
14392011-08-05 10:06:38,004 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK
14402011-08-05 10:06:38,004 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader
14412011-08-05 10:06:38,004 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false
14422011-08-05 10:06:38,004 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false
14432011-08-05 10:06:38,005 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false
14442011-08-05 10:06:38,005 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true
14452011-08-05 10:06:38,005 DEBUG [              omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT7977211776918209261d271f53f-3d17-487e-a723-2851d2ff94dc
14462011-08-05 10:06:38,010 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0
14472011-08-05 10:06:40,002 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629
14482011-08-05 10:06:40,003 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
14492011-08-05 10:06:40,222 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs
14502011-08-05 10:06:40,222 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata
14512011-08-05 10:06:40,242 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata
14522011-08-05 10:06:40,277 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other"
14532011-08-05 10:06:40,277 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
14542011-08-05 10:06:40,281 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK
14552011-08-05 10:06:40,281 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader
14562011-08-05 10:06:40,282 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false
14572011-08-05 10:06:40,282 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false
14582011-08-05 10:06:40,282 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false
14592011-08-05 10:06:40,282 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true
14602011-08-05 10:06:40,282 DEBUG [              omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT71255363870099992721f3d67f1-b736-445a-aefa-6092b2454641
14612011-08-05 10:06:40,283 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0
14622011-08-05 10:06:42,262 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629
14632011-08-05 10:06:42,262 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
14642011-08-05 10:06:42,438 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs
14652011-08-05 10:06:42,438 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata
14662011-08-05 10:06:42,455 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata
14672011-08-05 10:06:42,461 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other"
14682011-08-05 10:06:42,464 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
14692011-08-05 10:06:42,468 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK
14702011-08-05 10:06:42,468 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader
14712011-08-05 10:06:42,468 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false
14722011-08-05 10:06:42,468 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false
14732011-08-05 10:06:42,468 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false
14742011-08-05 10:06:42,468 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true
14752011-08-05 10:06:42,468 DEBUG [              omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2674149843153551160c30f7c07-4c5d-45d9-a2aa-9e7ced6a366d
14762011-08-05 10:06:42,470 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0
14772011-08-05 10:06:44,068 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629
14782011-08-05 10:06:44,068 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
14792011-08-05 10:06:44,205 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs
14802011-08-05 10:06:44,205 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata
14812011-08-05 10:06:44,214 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata
14822011-08-05 10:06:44,220 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other"
14832011-08-05 10:06:44,220 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
14842011-08-05 10:06:44,223 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK
14852011-08-05 10:06:44,223 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader
14862011-08-05 10:06:44,223 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false
14872011-08-05 10:06:44,223 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false
14882011-08-05 10:06:44,223 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false
14892011-08-05 10:06:44,223 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true
14902011-08-05 10:06:44,224 DEBUG [              omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT73691400941495315987b50ef4a-108e-4f76-951b-e0c5599497c3
14912011-08-05 10:06:44,225 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0
14922011-08-05 10:06:45,929 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629
14932011-08-05 10:06:45,930 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
14942011-08-05 10:06:46,066 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs
14952011-08-05 10:06:46,067 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata
14962011-08-05 10:06:46,077 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata
14972011-08-05 10:06:46,081 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other"
14982011-08-05 10:06:46,081 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
14992011-08-05 10:06:46,085 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK
15002011-08-05 10:06:46,085 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader
15012011-08-05 10:06:46,085 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false
15022011-08-05 10:06:46,085 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false
15032011-08-05 10:06:46,085 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false
15042011-08-05 10:06:46,085 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true
15052011-08-05 10:06:46,085 DEBUG [              omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT2060473520148280875c2b031a-5531-4746-ad1a-f11e07e3c368
15062011-08-05 10:06:46,087 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0
15072011-08-05 10:06:47,813 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629
15082011-08-05 10:06:47,813 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
15092011-08-05 10:06:47,980 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs
15102011-08-05 10:06:47,980 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata
15112011-08-05 10:06:47,989 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata
15122011-08-05 10:06:47,993 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other"
15132011-08-05 10:06:47,994 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
15142011-08-05 10:06:47,997 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK
15152011-08-05 10:06:47,997 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader
15162011-08-05 10:06:47,997 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false
15172011-08-05 10:06:47,997 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false
15182011-08-05 10:06:47,997 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false
15192011-08-05 10:06:47,997 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true
15202011-08-05 10:06:47,998 DEBUG [              omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT5121044750387534918157ebf96-7289-49c1-9ac6-41dc010fd742
15212011-08-05 10:06:47,999 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0
15222011-08-05 10:06:50,963 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629
15232011-08-05 10:06:50,963 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
15242011-08-05 10:06:51,144 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs
15252011-08-05 10:06:51,145 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata
15262011-08-05 10:06:51,155 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata
15272011-08-05 10:06:51,163 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other"
15282011-08-05 10:06:51,163 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
15292011-08-05 10:06:51,168 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK
15302011-08-05 10:06:51,168 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader
15312011-08-05 10:06:51,168 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false
15322011-08-05 10:06:51,168 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false
15332011-08-05 10:06:51,168 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false
15342011-08-05 10:06:51,168 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true
15352011-08-05 10:06:51,168 DEBUG [              omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT55929547664295390529a9322c7-4a0d-4441-a5fd-1dd67b9be8ba
15362011-08-05 10:06:51,170 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0
15372011-08-05 10:06:52,966 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629
15382011-08-05 10:06:52,966 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
15392011-08-05 10:06:53,165 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs
15402011-08-05 10:06:53,166 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata
15412011-08-05 10:06:53,188 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata
15422011-08-05 10:06:53,192 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other"
15432011-08-05 10:06:53,192 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
15442011-08-05 10:06:53,198 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK
15452011-08-05 10:06:53,198 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader
15462011-08-05 10:06:53,198 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false
15472011-08-05 10:06:53,198 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false
15482011-08-05 10:06:53,198 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false
15492011-08-05 10:06:53,199 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true
15502011-08-05 10:06:53,199 DEBUG [              omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT61988984325969446881c30454e-3ada-46cd-9553-8cae2ae34fae
15512011-08-05 10:06:53,200 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0
15522011-08-05 10:06:54,811 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629
15532011-08-05 10:06:54,811 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
15542011-08-05 10:06:54,933 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs
15552011-08-05 10:06:54,933 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata
15562011-08-05 10:06:54,951 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata
15572011-08-05 10:06:54,955 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other"
15582011-08-05 10:06:54,955 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
15592011-08-05 10:06:54,967 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK
15602011-08-05 10:06:54,967 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader
15612011-08-05 10:06:54,967 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false
15622011-08-05 10:06:54,967 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false
15632011-08-05 10:06:54,967 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false
15642011-08-05 10:06:54,967 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true
15652011-08-05 10:06:54,968 DEBUG [              omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3557980521405747738fc84ecdc-7601-4145-bef3-da8075def8ea
15662011-08-05 10:06:54,969 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0
15672011-08-05 10:06:57,128 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) OMERO Version: 4.3.2-DEV-b00b38af-b2629
15682011-08-05 10:06:57,128 INFO  [       ome.formats.importer.ImportConfig] ( Thread-21) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
15692011-08-05 10:06:57,301 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Reading IFDs
15702011-08-05 10:06:57,301 INFO  [       loci.formats.in.MinimalTiffReader] ( Thread-21) Populating metadata
15712011-08-05 10:06:57,310 INFO  [          loci.formats.in.BaseTiffReader] ( Thread-21) Populating OME metadata
15722011-08-05 10:06:57,314 WARN  [.model.enums.handlers.BinningEnumHandler] ( Thread-21) Unknown Binning value '2x1' will be stored as "Other"
15732011-08-05 10:06:57,314 WARN  [    ome.formats.enums.IQueryEnumProvider] ( Thread-21) Enumeration 'Other' does not exist in 'class omero.model.Binning' returning 'null'
15742011-08-05 10:06:57,317 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) File format: Metamorph STK
15752011-08-05 10:06:57,317 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Base reader: loci.formats.in.MetamorphReader
15762011-08-05 10:06:57,317 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Metadata only import? false
15772011-08-05 10:06:57,317 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Archiving enabled? false
15782011-08-05 10:06:57,317 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Container metadata only import? false
15792011-08-05 10:06:57,317 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-21) Reader is not of HCS domain, use metafile: true
15802011-08-05 10:06:57,317 DEBUG [              omero.util.TempFileManager] ( Thread-21) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT28166372033143313999c3c6d6b-d6de-4ee2-8dc1-0ed4cd044efc
15812011-08-05 10:06:57,318 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-21) Unknown target class for LSID: Image:0
15822011-08-05 10:06:59,867 INFO  [       ome.formats.importer.ImportConfig] ( Thread-28) OMERO Version: 4.3.2-DEV-b00b38af-b2629
15832011-08-05 10:06:59,870 INFO  [       ome.formats.importer.ImportConfig] ( Thread-28) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
15842011-08-05 10:06:59,963 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading header
15852011-08-05 10:06:59,963 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating core metadata
15862011-08-05 10:06:59,963 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading extended header
15872011-08-05 10:06:59,967 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating original metadata
15882011-08-05 10:07:00,074 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating OME metadata
15892011-08-05 10:07:00,329 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading header
15902011-08-05 10:07:00,329 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating original metadata
15912011-08-05 10:07:00,330 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating OME metadata
15922011-08-05 10:07:00,384 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) File format: Deltavision
15932011-08-05 10:07:00,385 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Base reader: loci.formats.in.DeltavisionReader
15942011-08-05 10:07:00,385 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Metadata only import? false
15952011-08-05 10:07:00,385 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Archiving enabled? false
15962011-08-05 10:07:00,385 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Container metadata only import? false
15972011-08-05 10:07:00,385 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Reader is not of HCS domain, use metafile: true
15982011-08-05 10:07:00,386 DEBUG [              omero.util.TempFileManager] ( Thread-28) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT894985039063429607e4cd18ca-2895-4916-a28a-89fb43f7a257
15992011-08-05 10:07:00,393 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-28) Unknown target class for LSID: Image:0
16002011-08-05 10:07:31,800 INFO  [       ome.formats.importer.ImportConfig] ( Thread-28) OMERO Version: 4.3.2-DEV-b00b38af-b2629
16012011-08-05 10:07:31,800 INFO  [       ome.formats.importer.ImportConfig] ( Thread-28) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
16022011-08-05 10:07:31,965 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading header
16032011-08-05 10:07:31,966 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating core metadata
16042011-08-05 10:07:31,966 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading extended header
16052011-08-05 10:07:31,971 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating original metadata
16062011-08-05 10:07:31,990 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating OME metadata
16072011-08-05 10:07:32,015 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading header
16082011-08-05 10:07:32,015 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating original metadata
16092011-08-05 10:07:32,016 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating OME metadata
16102011-08-05 10:07:32,052 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) File format: Deltavision
16112011-08-05 10:07:32,052 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Base reader: loci.formats.in.DeltavisionReader
16122011-08-05 10:07:32,052 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Metadata only import? false
16132011-08-05 10:07:32,052 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Archiving enabled? false
16142011-08-05 10:07:32,054 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Container metadata only import? false
16152011-08-05 10:07:32,054 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Reader is not of HCS domain, use metafile: true
16162011-08-05 10:07:32,060 DEBUG [              omero.util.TempFileManager] ( Thread-28) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT658073076957056842790ffe5d1-b39f-4ff2-af6b-99fe864a0183
16172011-08-05 10:07:32,076 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-28) Unknown target class for LSID: Image:0
16182011-08-05 10:08:39,105 INFO  [       ome.formats.importer.ImportConfig] ( Thread-28) OMERO Version: 4.3.2-DEV-b00b38af-b2629
16192011-08-05 10:08:39,105 INFO  [       ome.formats.importer.ImportConfig] ( Thread-28) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
16202011-08-05 10:08:39,210 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading header
16212011-08-05 10:08:39,210 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating core metadata
16222011-08-05 10:08:39,210 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading extended header
16232011-08-05 10:08:39,214 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating original metadata
16242011-08-05 10:08:39,225 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating OME metadata
16252011-08-05 10:08:39,241 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading header
16262011-08-05 10:08:39,242 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating original metadata
16272011-08-05 10:08:39,243 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating OME metadata
16282011-08-05 10:08:39,255 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) File format: Deltavision
16292011-08-05 10:08:39,255 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Base reader: loci.formats.in.DeltavisionReader
16302011-08-05 10:08:39,255 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Metadata only import? false
16312011-08-05 10:08:39,255 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Archiving enabled? false
16322011-08-05 10:08:39,255 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Container metadata only import? false
16332011-08-05 10:08:39,257 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Reader is not of HCS domain, use metafile: true
16342011-08-05 10:08:39,259 DEBUG [              omero.util.TempFileManager] ( Thread-28) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4126858833020085253d27af75-bf1a-4ffc-a1a3-825c0e0dc215
16352011-08-05 10:08:39,261 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-28) Unknown target class for LSID: Image:0
16362011-08-05 10:09:01,283 INFO  [       ome.formats.importer.ImportConfig] ( Thread-28) OMERO Version: 4.3.2-DEV-b00b38af-b2629
16372011-08-05 10:09:01,283 INFO  [       ome.formats.importer.ImportConfig] ( Thread-28) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
16382011-08-05 10:09:01,378 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading header
16392011-08-05 10:09:01,378 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating core metadata
16402011-08-05 10:09:01,378 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading extended header
16412011-08-05 10:09:01,379 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating original metadata
16422011-08-05 10:09:01,379 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating OME metadata
16432011-08-05 10:09:01,381 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading header
16442011-08-05 10:09:01,382 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating original metadata
16452011-08-05 10:09:01,382 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating OME metadata
16462011-08-05 10:09:01,383 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) File format: Deltavision
16472011-08-05 10:09:01,383 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Base reader: loci.formats.in.DeltavisionReader
16482011-08-05 10:09:01,383 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Metadata only import? false
16492011-08-05 10:09:01,383 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Archiving enabled? false
16502011-08-05 10:09:01,383 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Container metadata only import? false
16512011-08-05 10:09:01,384 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Reader is not of HCS domain, use metafile: true
16522011-08-05 10:09:01,384 DEBUG [              omero.util.TempFileManager] ( Thread-28) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT8389876253603457122bcec7328-e9ca-4c01-a9f3-e05df5156f34
16532011-08-05 10:09:01,385 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-28) Unknown target class for LSID: Image:0
16542011-08-05 10:09:02,943 INFO  [       ome.formats.importer.ImportConfig] ( Thread-28) OMERO Version: 4.3.2-DEV-b00b38af-b2629
16552011-08-05 10:09:02,943 INFO  [       ome.formats.importer.ImportConfig] ( Thread-28) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
16562011-08-05 10:09:03,026 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading header
16572011-08-05 10:09:03,026 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating core metadata
16582011-08-05 10:09:03,026 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading extended header
16592011-08-05 10:09:03,031 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating original metadata
16602011-08-05 10:09:03,042 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating OME metadata
16612011-08-05 10:09:03,067 INFO  [              loci.formats.FormatHandler] ( Thread-28) Reading header
16622011-08-05 10:09:03,067 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating original metadata
16632011-08-05 10:09:03,068 INFO  [              loci.formats.FormatHandler] ( Thread-28) Populating OME metadata
16642011-08-05 10:09:03,082 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) File format: Deltavision
16652011-08-05 10:09:03,082 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Base reader: loci.formats.in.DeltavisionReader
16662011-08-05 10:09:03,082 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Metadata only import? false
16672011-08-05 10:09:03,082 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Archiving enabled? false
16682011-08-05 10:09:03,082 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Container metadata only import? false
16692011-08-05 10:09:03,082 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-28) Reader is not of HCS domain, use metafile: true
16702011-08-05 10:09:03,083 DEBUG [              omero.util.TempFileManager] ( Thread-28) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT5225518926891074854315a834e-95c0-4e64-bc8c-5ecb74bbd4a1
16712011-08-05 10:09:03,085 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-28) Unknown target class for LSID: Image:0
16722011-08-05 10:09:31,507 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
16732011-08-05 10:09:31,507 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
16742011-08-05 10:09:31,516 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-29) Depth: 4 Metadata Level: MINIMUM
16752011-08-05 10:09:31,566 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
16762011-08-05 10:09:31,566 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
16772011-08-05 10:09:31,566 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
16782011-08-05 10:09:31,567 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
16792011-08-05 10:09:31,567 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
16802011-08-05 10:09:31,598 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
16812011-08-05 10:09:31,598 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
16822011-08-05 10:09:31,598 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
16832011-08-05 10:09:31,600 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
16842011-08-05 10:09:31,601 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
16852011-08-05 10:09:31,638 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
16862011-08-05 10:09:31,638 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
16872011-08-05 10:09:31,638 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
16882011-08-05 10:09:31,641 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
16892011-08-05 10:09:31,642 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
16902011-08-05 10:09:31,679 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
16912011-08-05 10:09:31,679 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
16922011-08-05 10:09:31,679 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
16932011-08-05 10:09:31,681 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
16942011-08-05 10:09:31,682 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
16952011-08-05 10:09:31,715 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
16962011-08-05 10:09:31,715 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
16972011-08-05 10:09:31,715 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
16982011-08-05 10:09:31,718 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
16992011-08-05 10:09:31,721 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17002011-08-05 10:09:31,752 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17012011-08-05 10:09:31,752 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17022011-08-05 10:09:31,752 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17032011-08-05 10:09:31,753 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17042011-08-05 10:09:31,755 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17052011-08-05 10:09:31,789 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17062011-08-05 10:09:31,789 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17072011-08-05 10:09:31,789 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17082011-08-05 10:09:31,791 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17092011-08-05 10:09:31,791 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17102011-08-05 10:09:31,820 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17112011-08-05 10:09:31,820 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17122011-08-05 10:09:31,820 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17132011-08-05 10:09:31,821 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17142011-08-05 10:09:31,822 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17152011-08-05 10:09:31,856 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17162011-08-05 10:09:31,856 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17172011-08-05 10:09:31,856 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17182011-08-05 10:09:31,859 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17192011-08-05 10:09:31,860 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17202011-08-05 10:09:31,885 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17212011-08-05 10:09:31,885 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17222011-08-05 10:09:31,885 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17232011-08-05 10:09:31,887 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17242011-08-05 10:09:31,889 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17252011-08-05 10:09:31,922 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17262011-08-05 10:09:31,922 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17272011-08-05 10:09:31,922 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17282011-08-05 10:09:31,923 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17292011-08-05 10:09:31,924 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17302011-08-05 10:09:32,041 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17312011-08-05 10:09:32,041 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17322011-08-05 10:09:32,041 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17332011-08-05 10:09:32,042 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17342011-08-05 10:09:32,042 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17352011-08-05 10:09:32,075 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17362011-08-05 10:09:32,075 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17372011-08-05 10:09:32,075 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17382011-08-05 10:09:32,075 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17392011-08-05 10:09:32,075 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17402011-08-05 10:09:32,136 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17412011-08-05 10:09:32,136 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17422011-08-05 10:09:32,136 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17432011-08-05 10:09:32,138 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17442011-08-05 10:09:32,142 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17452011-08-05 10:09:32,171 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17462011-08-05 10:09:32,171 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17472011-08-05 10:09:32,172 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17482011-08-05 10:09:32,172 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17492011-08-05 10:09:32,172 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17502011-08-05 10:09:32,202 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17512011-08-05 10:09:32,202 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17522011-08-05 10:09:32,202 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17532011-08-05 10:09:32,202 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17542011-08-05 10:09:32,202 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17552011-08-05 10:09:32,254 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17562011-08-05 10:09:32,254 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17572011-08-05 10:09:32,254 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17582011-08-05 10:09:32,255 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17592011-08-05 10:09:32,255 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17602011-08-05 10:09:32,290 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17612011-08-05 10:09:32,290 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17622011-08-05 10:09:32,290 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17632011-08-05 10:09:32,292 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17642011-08-05 10:09:32,293 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17652011-08-05 10:09:32,326 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17662011-08-05 10:09:32,326 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17672011-08-05 10:09:32,326 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17682011-08-05 10:09:32,327 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17692011-08-05 10:09:32,328 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17702011-08-05 10:09:32,359 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17712011-08-05 10:09:32,359 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17722011-08-05 10:09:32,359 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17732011-08-05 10:09:32,360 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17742011-08-05 10:09:32,361 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17752011-08-05 10:09:32,401 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17762011-08-05 10:09:32,401 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17772011-08-05 10:09:32,401 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17782011-08-05 10:09:32,403 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17792011-08-05 10:09:32,404 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17802011-08-05 10:09:32,434 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17812011-08-05 10:09:32,434 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17822011-08-05 10:09:32,434 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17832011-08-05 10:09:32,436 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17842011-08-05 10:09:32,436 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17852011-08-05 10:09:32,476 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17862011-08-05 10:09:32,476 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17872011-08-05 10:09:32,476 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17882011-08-05 10:09:32,478 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17892011-08-05 10:09:32,478 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17902011-08-05 10:09:32,517 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
17912011-08-05 10:09:32,517 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
17922011-08-05 10:09:32,517 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
17932011-08-05 10:09:32,518 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
17942011-08-05 10:09:32,518 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
17952011-08-05 10:09:32,522 INFO  [   ome.formats.importer.ImportCandidates] ( Thread-29) 28 file(s) parsed into 25 group(s) with 27 call(s) to setId in 993ms. (1006ms total) [2 unknowns]
17962011-08-05 10:09:32,696 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
17972011-08-05 10:09:32,697 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
17982011-08-05 10:09:32,963 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Adobe Photoshop
17992011-08-05 10:09:32,963 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.PSDReader
18002011-08-05 10:09:32,963 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
18012011-08-05 10:09:32,963 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
18022011-08-05 10:09:32,963 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
18032011-08-05 10:09:32,963 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
18042011-08-05 10:09:32,964 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT646101568007774965e4ec48d4-79a4-456a-859c-8622d0b7147c
18052011-08-05 10:09:32,965 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
18062011-08-05 10:09:34,408 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
18072011-08-05 10:09:34,408 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
18082011-08-05 10:09:34,527 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
18092011-08-05 10:09:34,527 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
18102011-08-05 10:09:34,528 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
18112011-08-05 10:09:34,529 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
18122011-08-05 10:09:34,542 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
18132011-08-05 10:09:34,551 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
18142011-08-05 10:09:34,552 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
18152011-08-05 10:09:34,552 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
18162011-08-05 10:09:34,563 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
18172011-08-05 10:09:34,563 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
18182011-08-05 10:09:34,563 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
18192011-08-05 10:09:34,563 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
18202011-08-05 10:09:34,563 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
18212011-08-05 10:09:34,563 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
18222011-08-05 10:09:34,563 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT844897328266208873ebc2c7ed-4f49-413e-a502-15fea2670fea
18232011-08-05 10:09:34,581 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
18242011-08-05 10:09:56,311 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
18252011-08-05 10:09:56,311 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
18262011-08-05 10:09:56,403 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
18272011-08-05 10:09:56,403 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
18282011-08-05 10:09:56,403 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
18292011-08-05 10:09:56,405 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
18302011-08-05 10:09:56,442 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
18312011-08-05 10:09:56,457 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
18322011-08-05 10:09:56,459 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
18332011-08-05 10:09:56,459 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
18342011-08-05 10:09:56,470 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
18352011-08-05 10:09:56,470 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
18362011-08-05 10:09:56,470 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
18372011-08-05 10:09:56,470 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
18382011-08-05 10:09:56,470 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
18392011-08-05 10:09:56,471 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
18402011-08-05 10:09:56,472 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT1442751726710649029eed597f2-4d93-452e-ab23-fb12e9111cd6
18412011-08-05 10:09:56,486 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
18422011-08-05 10:10:20,302 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
18432011-08-05 10:10:20,302 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
18442011-08-05 10:10:20,401 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
18452011-08-05 10:10:20,402 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
18462011-08-05 10:10:20,402 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
18472011-08-05 10:10:20,402 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
18482011-08-05 10:10:20,407 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
18492011-08-05 10:10:20,417 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
18502011-08-05 10:10:20,417 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
18512011-08-05 10:10:20,418 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
18522011-08-05 10:10:20,426 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
18532011-08-05 10:10:20,426 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
18542011-08-05 10:10:20,426 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
18552011-08-05 10:10:20,426 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
18562011-08-05 10:10:20,426 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
18572011-08-05 10:10:20,426 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
18582011-08-05 10:10:20,426 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4692114406666242085555b1c90-f97c-47dc-b0a4-e59406bdfdc9
18592011-08-05 10:10:20,428 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
18602011-08-05 10:10:39,084 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
18612011-08-05 10:10:39,084 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
18622011-08-05 10:10:39,194 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
18632011-08-05 10:10:39,194 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
18642011-08-05 10:10:39,194 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
18652011-08-05 10:10:39,195 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
18662011-08-05 10:10:39,295 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
18672011-08-05 10:10:39,312 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
18682011-08-05 10:10:39,312 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
18692011-08-05 10:10:39,313 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
18702011-08-05 10:10:39,326 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
18712011-08-05 10:10:39,326 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
18722011-08-05 10:10:39,326 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
18732011-08-05 10:10:39,326 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
18742011-08-05 10:10:39,326 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
18752011-08-05 10:10:39,326 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
18762011-08-05 10:10:39,327 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT7400440240651230812df206a00-6b05-4615-a8d3-bfe491088d71
18772011-08-05 10:10:39,328 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
18782011-08-05 10:11:25,129 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
18792011-08-05 10:11:25,129 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
18802011-08-05 10:11:25,221 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
18812011-08-05 10:11:25,221 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
18822011-08-05 10:11:25,221 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
18832011-08-05 10:11:25,222 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
18842011-08-05 10:11:25,229 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
18852011-08-05 10:11:25,240 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
18862011-08-05 10:11:25,240 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
18872011-08-05 10:11:25,241 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
18882011-08-05 10:11:25,252 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
18892011-08-05 10:11:25,252 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
18902011-08-05 10:11:25,252 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
18912011-08-05 10:11:25,252 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
18922011-08-05 10:11:25,252 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
18932011-08-05 10:11:25,252 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
18942011-08-05 10:11:25,253 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4087859716559766795202afed7-9e52-4c35-b9d8-fae847678429
18952011-08-05 10:11:25,254 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
18962011-08-05 10:12:19,005 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
18972011-08-05 10:12:19,005 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
18982011-08-05 10:12:19,086 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
18992011-08-05 10:12:19,087 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
19002011-08-05 10:12:19,087 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
19012011-08-05 10:12:19,087 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
19022011-08-05 10:12:19,092 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
19032011-08-05 10:12:19,099 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
19042011-08-05 10:12:19,100 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
19052011-08-05 10:12:19,100 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
19062011-08-05 10:12:19,107 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
19072011-08-05 10:12:19,107 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
19082011-08-05 10:12:19,107 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
19092011-08-05 10:12:19,107 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
19102011-08-05 10:12:19,107 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
19112011-08-05 10:12:19,108 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
19122011-08-05 10:12:19,109 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4450065236542678048ac14eb43-384d-4fe7-bd17-2277ad02115f
19132011-08-05 10:12:19,110 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
19142011-08-05 10:12:38,342 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
19152011-08-05 10:12:38,343 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
19162011-08-05 10:12:38,458 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
19172011-08-05 10:12:38,458 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
19182011-08-05 10:12:38,458 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
19192011-08-05 10:12:38,459 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
19202011-08-05 10:12:38,465 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
19212011-08-05 10:12:38,473 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
19222011-08-05 10:12:38,474 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
19232011-08-05 10:12:38,474 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
19242011-08-05 10:12:38,484 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
19252011-08-05 10:12:38,484 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
19262011-08-05 10:12:38,484 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
19272011-08-05 10:12:38,484 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
19282011-08-05 10:12:38,484 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
19292011-08-05 10:12:38,484 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
19302011-08-05 10:12:38,485 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT5951804743331599058146d4a5-061e-44e8-987b-85dd85a44ecb
19312011-08-05 10:12:38,486 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
19322011-08-05 10:13:04,974 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
19332011-08-05 10:13:04,975 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
19342011-08-05 10:13:05,078 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
19352011-08-05 10:13:05,078 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
19362011-08-05 10:13:05,079 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
19372011-08-05 10:13:05,079 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
19382011-08-05 10:13:05,083 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
19392011-08-05 10:13:05,089 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
19402011-08-05 10:13:05,090 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
19412011-08-05 10:13:05,090 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
19422011-08-05 10:13:05,096 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
19432011-08-05 10:13:05,096 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
19442011-08-05 10:13:05,096 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
19452011-08-05 10:13:05,096 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
19462011-08-05 10:13:05,096 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
19472011-08-05 10:13:05,096 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
19482011-08-05 10:13:05,097 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT70179254076823550847ffa847-140c-4342-bbf2-c3840e224707
19492011-08-05 10:13:05,098 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
19502011-08-05 10:13:20,234 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
19512011-08-05 10:13:20,234 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
19522011-08-05 10:13:20,353 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
19532011-08-05 10:13:20,353 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
19542011-08-05 10:13:20,353 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
19552011-08-05 10:13:20,354 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
19562011-08-05 10:13:20,365 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
19572011-08-05 10:13:20,376 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
19582011-08-05 10:13:20,377 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
19592011-08-05 10:13:20,377 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
19602011-08-05 10:13:20,391 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
19612011-08-05 10:13:20,391 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
19622011-08-05 10:13:20,391 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
19632011-08-05 10:13:20,391 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
19642011-08-05 10:13:20,391 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
19652011-08-05 10:13:20,392 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
19662011-08-05 10:13:20,392 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT321005785385508327685a4a9fc-aecc-489a-858d-cc00d4cf011e
19672011-08-05 10:13:20,394 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
19682011-08-05 10:13:52,333 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
19692011-08-05 10:13:52,333 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
19702011-08-05 10:13:52,408 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
19712011-08-05 10:13:52,408 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
19722011-08-05 10:13:52,408 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
19732011-08-05 10:13:52,409 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
19742011-08-05 10:13:52,414 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
19752011-08-05 10:13:52,422 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
19762011-08-05 10:13:52,423 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
19772011-08-05 10:13:52,423 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
19782011-08-05 10:13:52,429 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
19792011-08-05 10:13:52,429 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
19802011-08-05 10:13:52,429 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
19812011-08-05 10:13:52,429 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
19822011-08-05 10:13:52,429 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
19832011-08-05 10:13:52,429 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
19842011-08-05 10:13:52,429 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4567789669141052863c97f0ef7-d0a0-48de-90cf-7d68ca0709cb
19852011-08-05 10:13:52,431 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
19862011-08-05 10:14:15,346 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
19872011-08-05 10:14:15,346 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
19882011-08-05 10:14:15,439 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
19892011-08-05 10:14:15,439 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
19902011-08-05 10:14:15,439 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
19912011-08-05 10:14:15,440 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
19922011-08-05 10:14:15,452 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
19932011-08-05 10:14:15,464 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
19942011-08-05 10:14:15,464 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
19952011-08-05 10:14:15,465 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
19962011-08-05 10:14:15,475 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
19972011-08-05 10:14:15,475 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
19982011-08-05 10:14:15,475 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
19992011-08-05 10:14:15,475 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
20002011-08-05 10:14:15,475 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
20012011-08-05 10:14:15,476 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
20022011-08-05 10:14:15,477 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT444214155937802648761892fef-1ce2-41d5-b258-009e740394f3
20032011-08-05 10:14:15,480 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
20042011-08-05 10:14:54,254 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
20052011-08-05 10:14:54,254 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
20062011-08-05 10:14:54,358 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
20072011-08-05 10:14:54,358 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
20082011-08-05 10:14:54,358 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
20092011-08-05 10:14:54,359 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
20102011-08-05 10:14:54,365 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
20112011-08-05 10:14:54,377 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
20122011-08-05 10:14:54,377 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
20132011-08-05 10:14:54,378 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
20142011-08-05 10:14:54,385 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
20152011-08-05 10:14:54,385 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
20162011-08-05 10:14:54,385 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
20172011-08-05 10:14:54,385 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
20182011-08-05 10:14:54,385 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
20192011-08-05 10:14:54,385 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
20202011-08-05 10:14:54,386 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT45567081297254040836cd2bd26-927c-4445-b7e4-c36ab321c7f4
20212011-08-05 10:14:54,387 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
20222011-08-05 10:15:21,968 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
20232011-08-05 10:15:21,968 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
20242011-08-05 10:15:22,073 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
20252011-08-05 10:15:22,073 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
20262011-08-05 10:15:22,073 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
20272011-08-05 10:15:22,074 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
20282011-08-05 10:15:22,084 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
20292011-08-05 10:15:22,090 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
20302011-08-05 10:15:22,091 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
20312011-08-05 10:15:22,091 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
20322011-08-05 10:15:22,097 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
20332011-08-05 10:15:22,097 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
20342011-08-05 10:15:22,097 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
20352011-08-05 10:15:22,097 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
20362011-08-05 10:15:22,098 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
20372011-08-05 10:15:22,098 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
20382011-08-05 10:15:22,112 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4238217630882808211bba8fae7-de75-4757-9d31-789da1c52fdb
20392011-08-05 10:15:22,113 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
20402011-08-05 10:15:49,010 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
20412011-08-05 10:15:49,010 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
20422011-08-05 10:15:49,105 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
20432011-08-05 10:15:49,105 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
20442011-08-05 10:15:49,106 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
20452011-08-05 10:15:49,106 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
20462011-08-05 10:15:49,110 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
20472011-08-05 10:15:49,119 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
20482011-08-05 10:15:49,120 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
20492011-08-05 10:15:49,120 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
20502011-08-05 10:15:49,124 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
20512011-08-05 10:15:49,124 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
20522011-08-05 10:15:49,124 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
20532011-08-05 10:15:49,124 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
20542011-08-05 10:15:49,124 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
20552011-08-05 10:15:49,124 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
20562011-08-05 10:15:49,125 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT380383006679195800528392fb8-745d-4528-b0f6-6ddfefee8a2e
20572011-08-05 10:15:49,126 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
20582011-08-05 10:16:07,263 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
20592011-08-05 10:16:07,274 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
20602011-08-05 10:16:07,364 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
20612011-08-05 10:16:07,364 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
20622011-08-05 10:16:07,364 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
20632011-08-05 10:16:07,365 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
20642011-08-05 10:16:07,383 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
20652011-08-05 10:16:07,389 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
20662011-08-05 10:16:07,390 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
20672011-08-05 10:16:07,390 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
20682011-08-05 10:16:07,396 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
20692011-08-05 10:16:07,396 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
20702011-08-05 10:16:07,396 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
20712011-08-05 10:16:07,396 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
20722011-08-05 10:16:07,396 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
20732011-08-05 10:16:07,396 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
20742011-08-05 10:16:07,397 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT8285505721291527108a564b082-e87b-46cb-8247-427f5c339de1
20752011-08-05 10:16:07,398 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
20762011-08-05 10:16:49,415 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
20772011-08-05 10:16:49,430 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
20782011-08-05 10:16:49,545 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
20792011-08-05 10:16:49,545 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
20802011-08-05 10:16:49,545 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
20812011-08-05 10:16:49,545 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
20822011-08-05 10:16:49,545 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
20832011-08-05 10:16:49,546 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
20842011-08-05 10:16:49,547 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
20852011-08-05 10:16:49,547 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
20862011-08-05 10:16:49,548 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
20872011-08-05 10:16:49,548 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
20882011-08-05 10:16:49,548 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
20892011-08-05 10:16:49,548 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
20902011-08-05 10:16:49,548 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
20912011-08-05 10:16:49,549 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
20922011-08-05 10:16:49,585 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT921419287979091835793497023-2bd9-4c3d-b48f-d8fad24dc78c
20932011-08-05 10:16:49,587 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
20942011-08-05 10:16:51,167 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
20952011-08-05 10:16:51,167 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
20962011-08-05 10:16:51,346 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
20972011-08-05 10:16:51,346 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
20982011-08-05 10:16:51,346 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
20992011-08-05 10:16:51,346 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
21002011-08-05 10:16:51,347 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
21012011-08-05 10:16:51,350 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
21022011-08-05 10:16:51,351 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
21032011-08-05 10:16:51,351 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
21042011-08-05 10:16:51,353 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
21052011-08-05 10:16:51,353 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
21062011-08-05 10:16:51,353 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
21072011-08-05 10:16:51,353 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
21082011-08-05 10:16:51,353 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
21092011-08-05 10:16:51,353 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
21102011-08-05 10:16:51,353 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT90573527677767360125789bcbf-4d60-4a0b-97a2-11ded6baace0
21112011-08-05 10:16:51,355 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
21122011-08-05 10:16:56,842 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
21132011-08-05 10:16:56,861 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
21142011-08-05 10:16:56,957 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
21152011-08-05 10:16:56,957 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
21162011-08-05 10:16:56,957 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
21172011-08-05 10:16:56,959 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
21182011-08-05 10:16:56,973 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
21192011-08-05 10:16:56,981 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
21202011-08-05 10:16:56,982 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
21212011-08-05 10:16:56,982 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
21222011-08-05 10:16:56,990 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
21232011-08-05 10:16:56,990 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
21242011-08-05 10:16:56,990 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
21252011-08-05 10:16:56,990 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
21262011-08-05 10:16:56,990 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
21272011-08-05 10:16:56,990 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
21282011-08-05 10:16:57,002 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT624616897387343447678bfb53a-b7ac-4e7e-8231-a17d9ec6154d
21292011-08-05 10:16:57,004 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
21302011-08-05 10:17:33,589 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
21312011-08-05 10:17:33,602 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
21322011-08-05 10:17:33,708 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
21332011-08-05 10:17:33,708 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
21342011-08-05 10:17:33,708 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
21352011-08-05 10:17:33,708 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
21362011-08-05 10:17:33,709 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
21372011-08-05 10:17:33,710 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
21382011-08-05 10:17:33,711 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
21392011-08-05 10:17:33,711 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
21402011-08-05 10:17:33,712 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
21412011-08-05 10:17:33,712 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
21422011-08-05 10:17:33,712 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
21432011-08-05 10:17:33,712 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
21442011-08-05 10:17:33,712 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
21452011-08-05 10:17:33,712 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
21462011-08-05 10:17:33,728 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT4316763485865791062e231a32c-dcef-429a-b44a-beaeb740131f
21472011-08-05 10:17:33,729 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
21482011-08-05 10:17:35,830 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
21492011-08-05 10:17:35,830 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
21502011-08-05 10:17:35,924 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
21512011-08-05 10:17:35,924 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
21522011-08-05 10:17:35,924 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
21532011-08-05 10:17:35,925 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
21542011-08-05 10:17:35,931 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
21552011-08-05 10:17:35,937 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
21562011-08-05 10:17:35,938 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
21572011-08-05 10:17:35,938 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
21582011-08-05 10:17:35,944 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
21592011-08-05 10:17:35,944 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
21602011-08-05 10:17:35,944 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
21612011-08-05 10:17:35,944 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
21622011-08-05 10:17:35,944 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
21632011-08-05 10:17:35,945 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
21642011-08-05 10:17:35,949 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT9219098741386001056d7f1c830-c6ab-4d0a-aad5-31dc91efe37c
21652011-08-05 10:17:35,951 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
21662011-08-05 10:18:18,629 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
21672011-08-05 10:18:18,649 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
21682011-08-05 10:18:18,740 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
21692011-08-05 10:18:18,740 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
21702011-08-05 10:18:18,740 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
21712011-08-05 10:18:18,741 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
21722011-08-05 10:18:18,751 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
21732011-08-05 10:18:18,755 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
21742011-08-05 10:18:18,756 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
21752011-08-05 10:18:18,756 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
21762011-08-05 10:18:18,760 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
21772011-08-05 10:18:18,760 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
21782011-08-05 10:18:18,760 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
21792011-08-05 10:18:18,760 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
21802011-08-05 10:18:18,760 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
21812011-08-05 10:18:18,760 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
21822011-08-05 10:18:18,760 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT818742202467430270983a0462d-f013-435d-ba53-81fa0f381070
21832011-08-05 10:18:18,761 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
21842011-08-05 10:18:34,121 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
21852011-08-05 10:18:34,145 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
21862011-08-05 10:18:34,295 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
21872011-08-05 10:18:34,295 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
21882011-08-05 10:18:34,296 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
21892011-08-05 10:18:34,296 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
21902011-08-05 10:18:34,302 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
21912011-08-05 10:18:34,308 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
21922011-08-05 10:18:34,308 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
21932011-08-05 10:18:34,309 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
21942011-08-05 10:18:34,324 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
21952011-08-05 10:18:34,324 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
21962011-08-05 10:18:34,324 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
21972011-08-05 10:18:34,324 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
21982011-08-05 10:18:34,324 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
21992011-08-05 10:18:34,324 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
22002011-08-05 10:18:34,324 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT8559365787372642966ab5a122d-eb0a-46e2-b725-1024dc224f76
22012011-08-05 10:18:34,326 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
22022011-08-05 10:19:09,193 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
22032011-08-05 10:19:09,194 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
22042011-08-05 10:19:09,443 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
22052011-08-05 10:19:09,443 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
22062011-08-05 10:19:09,443 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
22072011-08-05 10:19:09,445 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
22082011-08-05 10:19:09,455 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
22092011-08-05 10:19:09,461 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
22102011-08-05 10:19:09,462 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
22112011-08-05 10:19:09,463 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
22122011-08-05 10:19:09,476 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
22132011-08-05 10:19:09,476 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
22142011-08-05 10:19:09,476 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
22152011-08-05 10:19:09,476 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
22162011-08-05 10:19:09,476 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
22172011-08-05 10:19:09,476 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
22182011-08-05 10:19:09,484 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT26474195767429651975bf1e4d9-a50c-4dc5-a5fe-24ea3d48e19d
22192011-08-05 10:19:09,486 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0
22202011-08-05 10:20:08,891 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) OMERO Version: 4.3.2-DEV-b00b38af-b2629
22212011-08-05 10:20:08,892 INFO  [       ome.formats.importer.ImportConfig] ( Thread-29) Bioformats version: 4.3.2-DEV revision: d1242b7 date: 19 July 2011
22222011-08-05 10:20:09,027 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
22232011-08-05 10:20:09,027 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating core metadata
22242011-08-05 10:20:09,028 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading extended header
22252011-08-05 10:20:09,028 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
22262011-08-05 10:20:09,043 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
22272011-08-05 10:20:09,045 INFO  [              loci.formats.FormatHandler] ( Thread-29) Reading header
22282011-08-05 10:20:09,046 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating original metadata
22292011-08-05 10:20:09,046 INFO  [              loci.formats.FormatHandler] ( Thread-29) Populating OME metadata
22302011-08-05 10:20:09,047 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) File format: Deltavision
22312011-08-05 10:20:09,047 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Base reader: loci.formats.in.DeltavisionReader
22322011-08-05 10:20:09,047 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Metadata only import? false
22332011-08-05 10:20:09,047 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Archiving enabled? false
22342011-08-05 10:20:09,047 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Container metadata only import? false
22352011-08-05 10:20:09,047 INFO  [      ome.formats.importer.ImportLibrary] ( Thread-29) Reader is not of HCS domain, use metafile: true
22362011-08-05 10:20:09,067 DEBUG [              omero.util.TempFileManager] ( Thread-29) Added file /Users/ola/omero/tmp/omero_ola/447@misio.dyn.lifesci.dundee.ac.uk/ORIGINAL_METADATA_TXT3407632872605848461e7331cfe-5e12-4e7a-9da7-9692f6d578d2
22372011-08-05 10:20:09,069 WARN  [    ome.formats.model.ReferenceProcessor] ( Thread-29) Unknown target class for LSID: Image:0

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OME source code is available under the GNU General public license or through commercial license from Glencoe Software

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