Task #12529 (new)
Opened 10 years ago
Last modified 9 years ago
BUG: Bioformats Evotec FLEX File reader (IO exception) — at Initial Version
| Reported by: | bramalingam | Owned by: | mlinkert |
|---|---|---|---|
| Priority: | minor | Milestone: | Unscheduled |
| Component: | Bio-Formats | Version: | 5.0.3 |
| Keywords: | n.a. | Cc: | kevinchen858@…, mlinkert |
| Resources: | n.a. | Referenced By: | n.a. |
| References: | n.a. | Remaining Time: | n.a. |
| Sprint: | n.a. |
Description
Related to issue : http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-August/004660.html
QA : 9456
Stack trace of the error :
java.io.IOException
at loci.common.xml.XMLTools.parseXML(XMLTools.java:436)
at loci.common.xml.XMLTools.parseXML(XMLTools.java:414)
at loci.formats.in.FlexReader?.parseFlexFile(FlexReader?.java:818)
at loci.formats.in.FlexReader?.groupFiles(FlexReader?.java:1278)
at loci.formats.in.FlexReader?.initFlexFile(FlexReader?.java:507)
at loci.formats.in.FlexReader?.initFile(FlexReader?.java:340)
at loci.formats.FormatReader?.setId(FormatReader?.java:1317)
at loci.plugins.in.ImportProcess?.initializeFile(ImportProcess?.java:494)
at loci.plugins.in.ImportProcess?.execute(ImportProcess?.java:144)
at loci.plugins.in.Importer.showDialogs(Importer.java:141)
at loci.plugins.in.Importer.run(Importer.java:79)
at loci.plugins.LociImporter?.run(LociImporter?.java:81)
at ij.IJ.runUserPlugIn(IJ.java:201)
at ij.IJ.runPlugIn(IJ.java:165)
at ij.Executer.runCommand(Executer.java:131)
at ij.Executer.run(Executer.java:64)
at java.lang.Thread.run(Thread.java:695)
Caused by: org.xml.sax.SAXParseException: Content is not allowed in trailing section.
at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper?.createSAXParseException(ErrorHandlerWrapper?.java:195)
at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper?.fatalError(ErrorHandlerWrapper?.java:174)
at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:388)
at com.sun.org.apache.xerces.internal.impl.XMLScanner.reportFatalError(XMLScanner.java:1476)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$TrailingMiscDriver?.next(XMLDocumentScannerImpl.java:1457)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:647)
at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:513)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:815)
at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:744)
at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:128)
at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1208)
at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:543)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:395)
at javax.xml.parsers.SAXParser.parse(SAXParser.java:198)
at loci.common.xml.XMLTools.parseXML(XMLTools.java:428)
... 16 more
