Task #12529 (new)
Opened 10 years ago
Last modified 9 years ago
BUG: Bioformats Evotec FLEX File reader (IO exception) — at Version 2
Reported by: | bramalingam | Owned by: | mlinkert |
---|---|---|---|
Priority: | minor | Milestone: | 5.1.1 |
Component: | Bio-Formats | Version: | 5.0.3 |
Keywords: | n.a. | Cc: | kevinchen858@…, mlinkert |
Resources: | n.a. | Referenced By: | n.a. |
References: | n.a. | Remaining Time: | n.a. |
Sprint: | n.a. |
Description (last modified by jburel)
Related to issue : http://lists.openmicroscopy.org.uk/pipermail/ome-users/2014-August/004660.html
QA : 9456
Stack trace of the error :
java.io.IOException at loci.common.xml.XMLTools.parseXML(XMLTools.java:436) at loci.common.xml.XMLTools.parseXML(XMLTools.java:414) at loci.formats.in.FlexReader.parseFlexFile(FlexReader.java:818) at loci.formats.in.FlexReader.groupFiles(FlexReader.java:1278) at loci.formats.in.FlexReader.initFlexFile(FlexReader.java:507) at loci.formats.in.FlexReader.initFile(FlexReader.java:340) at loci.formats.FormatReader.setId(FormatReader.java:1317) at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:494) at loci.plugins.in.ImportProcess.execute(ImportProcess.java:144) at loci.plugins.in.Importer.showDialogs(Importer.java:141) at loci.plugins.in.Importer.run(Importer.java:79) at loci.plugins.LociImporter.run(LociImporter.java:81) at ij.IJ.runUserPlugIn(IJ.java:201) at ij.IJ.runPlugIn(IJ.java:165) at ij.Executer.runCommand(Executer.java:131) at ij.Executer.run(Executer.java:64) at java.lang.Thread.run(Thread.java:695) Caused by: org.xml.sax.SAXParseException: Content is not allowed in trailing section. at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.createSAXParseException(ErrorHandlerWrapper.java:195) at com.sun.org.apache.xerces.internal.util.ErrorHandlerWrapper.fatalError(ErrorHandlerWrapper.java:174) at com.sun.org.apache.xerces.internal.impl.XMLErrorReporter.reportError(XMLErrorReporter.java:388) at com.sun.org.apache.xerces.internal.impl.XMLScanner.reportFatalError(XMLScanner.java:1476) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl$TrailingMiscDriver.next(XMLDocumentScannerImpl.java:1457) at com.sun.org.apache.xerces.internal.impl.XMLDocumentScannerImpl.next(XMLDocumentScannerImpl.java:647) at com.sun.org.apache.xerces.internal.impl.XMLDocumentFragmentScannerImpl.scanDocument(XMLDocumentFragmentScannerImpl.java:513) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:815) at com.sun.org.apache.xerces.internal.parsers.XML11Configuration.parse(XML11Configuration.java:744) at com.sun.org.apache.xerces.internal.parsers.XMLParser.parse(XMLParser.java:128) at com.sun.org.apache.xerces.internal.parsers.AbstractSAXParser.parse(AbstractSAXParser.java:1208) at com.sun.org.apache.xerces.internal.jaxp.SAXParserImpl$JAXPSAXParser.parse(SAXParserImpl.java:543) at javax.xml.parsers.SAXParser.parse(SAXParser.java:395) at javax.xml.parsers.SAXParser.parse(SAXParser.java:198) at loci.common.xml.XMLTools.parseXML(XMLTools.java:428) ... 16 more
Change History (2)
comment:1 Changed 10 years ago by mlinkert
- Milestone changed from Unscheduled to 5.1.1
comment:2 Changed 9 years ago by jburel
- Description modified (diff)
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Moving to 5.1.1 for triage.