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Bug #1542 (new)

Opened 15 years ago

Last modified 15 years ago

import gets stuck in "prepping" stage — at Initial Version

Reported by: jamoore Owned by: bwzloranger
Priority: blocker Cc: jrswedlow, jburel
Sprint: n.a.
Total Remaining Time: n.a.

Description

For about 15 minutes I've been in the "prepping" stage. Checked thread dump, no activity.

From log:

2009-10-11 20:30:45,233 324189     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Well:0:0 == omero.model.WellI@3865db85,omero.model.Well:0:0
2009-10-11 20:30:45,233 324189     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.WellSample:0:0:0 == omero.model.WellSampleI@438e9e9,omero.model.WellSample:0:0:0
2009-10-11 20:30:45,233 324189     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - Starting references....
2009-10-11 20:30:45,233 324189     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.Plate:0 == omero.model.ScreenI:1
2009-10-11 20:30:45,233 324189     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - Image:0 == Instrument:0
2009-10-11 20:30:45,233 324189     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - Image:0 == omero.model.FileAnnotation:0:0
2009-10-11 20:30:45,233 324189     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.FileAnnotation:0:0 == omero.model.OriginalFile:0
2009-10-11 20:30:45,233 324189     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - omero.model.WellSample:0:0:0 == Image:0
2009-10-11 20:30:45,249 324205     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - containerCache contains 13 entries.
2009-10-11 20:30:45,249 324205     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - referenceCache contains 5 entries.
2009-10-11 20:30:45,327 324283     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - Saving pixels id: 66
2009-10-11 20:31:26,483 365439     [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:32:26,483 425439     [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:33:26,499 485455     [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:34:26,499 545455     [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:35:26,514 605470     [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:36:20,749 659705     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - Creating root!
2009-10-11 20:36:20,764 659720     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - Creating root!
2009-10-11 20:36:21,061 660017     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - Creating root!
2009-10-11 20:36:26,514 665470     [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:36:31,733 670689     [2-thread-1] WARN       ome.formats.OMEROMetadataStoreClient  - Duplicate LSID Instrument:0 exists in omero.model.InstrumentI@5986f987,Instrument:0
2009-10-11 20:36:31,733 670689     [2-thread-1] WARN       ome.formats.OMEROMetadataStoreClient  - Duplicate LSID Instrument:0 exists in omero.model.InstrumentI@5986f987,Instrument:0
2009-10-11 20:36:31,749 670705     [2-thread-1] WARN       ome.formats.OMEROMetadataStoreClient  - Duplicat
...lots of these...
2009-10-11 20:36:34,124 673080     [2-thread-1] WARN       ome.formats.OMEROMetadataStoreClient  - Duplicate LSID Instrument:0 exists in omero.model.InstrumentI@5986f987,Instrument:0
2009-10-11 20:36:34,139 673095     [2-thread-1] WARN       ome.formats.OMEROMetadataStoreClient  - Duplicate LSID Instrument:0 exists in omero.model.InstrumentI@5986f987,Instrument:0
2009-10-11 20:36:55,217 694173     [2-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - Creating root!
2009-10-11 20:37:26,530 725486     [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:38:26,530 785486     [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:39:26,530 845486     [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:40:26,530 905486     [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:41:26,546 965502     [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:42:26,546 1025502    [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:43:26,546 1085502    [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:44:26,546 1145502    [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:45:26,546 1205502    [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping
2009-10-11 20:46:26,561 1265517    [4-thread-1] DEBUG      ome.formats.OMEROMetadataStoreClient  - KeepAlive ping

Change History (0)

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