Warning: Can't synchronize with repository "(default)" (/home/git/ome.git does not appear to be a Git repository.). Look in the Trac log for more information.
Notice: In order to edit this ticket you need to be either: a Product Owner, The owner or the reporter of the ticket, or, in case of a Task not yet assigned, a team_member"

Task #3691 (closed)

Opened 13 years ago

Closed 13 years ago

Last modified 13 years ago

InCell 2000 data handling

Reported by: cxallan Owned by: cxallan
Priority: minor Milestone: OMERO-Beta4.3
Component: Import Version: n.a.
Keywords: n.a. Cc: jburel, jrswedlow, jamoore
Resources: n.a. Referenced By: n.a.
References: n.a. Remaining Time: 0.0d
Sprint: 2011-01-27 (4)

Description

General InCell? 2000 data handling needs to be improved.

Change History (11)

comment:1 Changed 13 years ago by cxallan

  • Owner set to cxallan
  • Status changed from new to assigned

Upstream ticket for InCell? 2000 import is ​bio-formats:#623 with commits ​bio-formats:r7417 and ​bio-formats:r7418 resolving issues with import itself.

comment:2 Changed 13 years ago by cxallan

(In [8751]) Updated version of populate_roi with better InCell? 2000 data support.

Additional features:

  • Threaded update of ROI objects (~10% overhead, near linear speed increase)
  • Basic handling of organelle data
  • Generally more robust sparse data support
Last edited 13 years ago by cxallan (previous) (diff)

comment:3 Changed 13 years ago by cxallan

(In [8753]) Ported to logging throughout and fixed threaded update_rois for all formats. (See #3691)

comment:4 Changed 13 years ago by jburel

  • Sprint changed from 2010-12-23 (22) to 2011-01-13 (23)

Moved from sprint 2010-12-23 (22)

comment:5 Changed 13 years ago by cxallan

  • Remaining Time set to 1.0

Remaining issues are:

  • Missing ROIs linkages from tables
  • General read through and testing to ensure that MIAS and Flex data handling are not broken

comment:6 Changed 13 years ago by jburel

  • Sprint changed from 2011-01-13 (23) to 2011-01-27 (24)

Moved from sprint 2011-01-13 (23)

comment:7 Changed 13 years ago by cxallan

  • Owner cxallan deleted
  • Status changed from assigned to new

comment:8 Changed 13 years ago by cxallan

  • Owner set to cxallan
  • Status changed from new to accepted

comment:9 Changed 13 years ago by Chris Allan <callan@…>

(In [b4d2f2db2ec1b4711686664311a1044f55d3ef52/ome.git]) Ensured that populate ROI will run to completion. (See #3691)

With InCell? 2000 datasets, populate ROI will now run to completion. A
couple other small bugs were also resolved:

  • Joining of a session from the command line
  • Various missing but useful debug statements

comment:10 Changed 13 years ago by cxallan

  • Remaining Time changed from 1.0 to 0
  • Resolution set to fixed
  • Status changed from accepted to closed

comment:11 Changed 13 years ago by Chris Allan <callan@…>

(In [b4d2f2db2ec1b4711686664311a1044f55d3ef52/ome.git]on branches master, develop, feature/5252-import-cancel, fix/4463, python-gateway) Ensured that populate ROI will run to completion. (See #3691)

With InCell? 2000 datasets, populate ROI will now run to completion. A
couple other small bugs were also resolved:

  • Joining of a session from the command line
  • Various missing but useful debug statements
Note: See TracTickets for help on using tickets. You may also have a look at Agilo extensions to the ticket.

1.3.13-PRO © 2008-2011 Agilo Software all rights reserved (this page was served in: 0.105592 sec.)

© 2000-2014 University of Dundee & Open Microscopy Environment. Creative Commons Attribution 3.0 Unported License
OME source code is available under the GNU General public license or through commercial license from Glencoe Software

We're Hiring!