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Task #6608 (closed)

Opened 13 years ago

Closed 13 years ago

Last modified 13 years ago

BUG: Import CellWorx Fail in Insight

Reported by:	ajpatterson	Owned by:	mlinkert
Priority:	major	Milestone:	OMERO-Beta4.3.2
Component:	Bio-Formats	Version:	n.a.
Keywords:	n.a.	Cc:	saloynton, jburel
Resources:	n.a.	Referenced By:	n.a.
References:	n.a.	Remaining Time:	0.0d
Sprint:	2011-09-01 (4)

Description

Importing CellWorx? by selecting Plate1 folder and adding to queue.

Asks for screen to use, makes the screen but does not put plate into screen and does not put the images into the plate. The imported images (found in orphaned images) also have channels of different sizes. Blue channel is full frame but red channel is only covering the top of the frame. See image.

References

Attachments (1)

CellWorx.png (1.4 MB) - added by ajpatterson 13 years ago.

Download all attachments as: .zip

Change History (13)

Changed 13 years ago by ajpatterson

Attachment CellWorx.png added

comment:1 Changed 13 years ago by saloynton

I have also seen the same problem with cellwox and incell plates.

comment:2 Changed 13 years ago by jburel

Remaining Time set to 0.25
Sprint set to 2011-09-01 (4)
Status changed from new to accepted

comment:3 Changed 13 years ago by jburel <j.burel@…>

(In [19fd9c770af91243ff255def71cd37c4bf852687/ome.git] on branch develop) Fix import and display problem for CellWorx? (see #6608)

comment:4 Changed 13 years ago by jburel

Cc saloynton jburel added
Component changed from Insight to Bio-Formats
Owner changed from jburel to mlinkert-x

Fix problem in insight but we still have an import issue:

A plate acquisition is created and correctly linked to the plate.
Well samples are NOT linked to the plate acquisition.

Passing ticket to melissa

comment:9 Changed 13 years ago by mlinkert

Remaining Time changed from 0.25 to 0.1

New JARs from the above commits are now in OMERO, so the latest Hudson builds should fix the problem.

Andrew or Jean-Marie, if you could double-check that the plate imports and displays correctly with the latest builds (and close the ticket if it does) that would be much appreciated.

comment:10 Changed 13 years ago by jburel

Plate acquisition/Well samples links are now correct.
We probably need to validate with other tools the red channel issue i.e. top-half of the image for all images.
Is that what we should expect?

comment:11 Changed 13 years ago by jburel

Remaining Time changed from 0.1 to 0
Resolution set to fixed
Status changed from accepted to closed

comment:12 Changed 13 years ago by jburel

Cf. Melissa's comment see #6618

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