Bug: Insight 4.4.6 thumbs & 'not valid image'

[wmoore]

At least 3 reports seem to be the same problem:

• Jason: ​https://www.openmicroscopy.org/qa2/qa/feedback/6622/
• UNC: ​https://www.openmicroscopy.org/qa2/qa/feedback/6628/
• Forum: ​https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=4888

Seems that 4.4.5 Insight is OK, but 4.4.6 & 4.4.7 have black thumbnails and 'not a valid image' when trying to view the image. Jason (on nightshade) says this is ALL images but QA 6628 says 'many'.

Nothing obvious in the server logs (Josh looked at nightshade logs at QA 6622 and the UNC blitz logs are under squig/apache_repo/6632/.

Client logs (on forum) have:

2013-04-22 19:19:34,313 ERROR [a.agents.metadata.RenderingControlLoader] (entQueue-0) Data Retrieval Failure: java.lang.NullPointerException: No rendering engine.
at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.<init>(RenderingControlProxy.java:783)
at org.openmicroscopy.shoola.env.rnd.PixelsServicesFactory.makeNew(PixelsServicesFactory.java:656)

but the full logs were sent to Josh.

Forum user was Java 6 & 7 on Windows 7 64 bit. Jason was also on Windows 7. Don't know about UNC.

NB: UNC reported an error with RE in web - download image as jpeg or Batch_Image_Export, but don't know if this is related.

File "/usr/omero/lib/python/omero_api_RenderingEngine_ice.py", line 410, in load
return _M_omero.api.RenderingEngine._op_load.invoke(self, ((), _ctx))
InternalException: exception ::omero::InternalException
{
serverStackTrace = ome.conditions.InternalException: Wrapped Exception: (java.lang.ArrayIndexOutOfBoundsException):
null
serverExceptionClass = ome.conditions.InternalException
message = Wrapped Exception: (java.lang.ArrayIndexOutOfBoundsException):
null
}

[mtbcarroll]

I don't know if it's related, but with a local build of develop recently I was getting "not a valid image" from Insight when trying to view the images imported from zeiss-czi/raw.czi.

[wmoore]

More info added to forum: ​https://www.openmicroscopy.org/community/viewtopic.php?f=4&t=4888&start=10

[jamoore]

Moving into blocker sprint for evaluation/reproducing.

[cxallan]

Full stack trace from Jason when trying to open the image viewer:

2013-05-28 10:14:57,174 ERROR [a.agents.metadata.RenderingControlLoader] (entQueue-0) Data Retrieval Failure: java.lang.NullPointerException: No rendering engine.
    at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.<init>(RenderingControlProxy.java:855)
    at org.openmicroscopy.shoola.env.rnd.PixelsServicesFactory.makeNew(PixelsServicesFactory.java:725)
    at org.openmicroscopy.shoola.env.rnd.PixelsServicesFactory.createRenderingControl(PixelsServicesFactory.java:254)
    at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:627)
    at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97)
    at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
    at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
    at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
    at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
    at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
    at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
    at java.lang.Thread.run(Unknown Source)
Data Retrieval Failure: java.lang.NullPointerException: No rendering engine.
    at org.openmicroscopy.shoola.env.rnd.RenderingControlProxy.<init>(RenderingControlProxy.java:855)
    at org.openmicroscopy.shoola.env.rnd.PixelsServicesFactory.makeNew(PixelsServicesFactory.java:725)
    at org.openmicroscopy.shoola.env.rnd.PixelsServicesFactory.createRenderingControl(PixelsServicesFactory.java:254)
    at org.openmicroscopy.shoola.env.data.OmeroImageServiceImpl.loadRenderingControl(OmeroImageServiceImpl.java:627)
    at org.openmicroscopy.shoola.env.data.views.calls.RenderingControlLoader$1.doCall(RenderingControlLoader.java:97)
    at org.openmicroscopy.shoola.env.data.views.BatchCall.doStep(BatchCall.java:144)
    at org.openmicroscopy.shoola.util.concur.tasks.CompositeTask.doStep(CompositeTask.java:226)
    at org.openmicroscopy.shoola.env.data.views.CompositeBatchCall.doStep(CompositeBatchCall.java:126)
    at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.exec(ExecCommand.java:165)
    at org.openmicroscopy.shoola.util.concur.tasks.ExecCommand.run(ExecCommand.java:276)
    at org.openmicroscopy.shoola.util.concur.tasks.AsyncProcessor$Runner.run(AsyncProcessor.java:91)
    at java.lang.Thread.run(Unknown Source)

[jburel]

Discussion in Paris. Cc'ing Curtis, similar issue might exist in ImageJ (Java 7/Windows)

[wmoore]

Another issue with Windows, Java update 1.7 and Insight 4.4.6: #11244

[Melissa Linkert <melissa@…>]

(In [005f8f6284402083558aa636495dd87f563154d4/ome.git] on branch develop) Use the reflected network check on non-Linux platforms

If it has been determined that the reflected check (i.e. using Java 1.6+
code) can be used, then try that first on non-Linux systems. If it
returns false or cannot be run, then the original Java 1.5 is still
used.

This prevents the network from being detected as down on non-Linux
systems with Java 1.7.0-b27.

See #10824, #10838, and #11244.

[jburel]

This should be fixed by patch and ​https://github.com/openmicroscopy/openmicroscopy/pull/1321

Now that the minimum version for Java is 1.6. The network checker code can be modified. That will happen in 4.4.10 at the earliest.